Frontiers in Bioinformatics

Original Research

Published on 14 Jan 2025

hsa-miR-548d-3p: a potential microRNA to target nucleocapsid and/or capsid genes in multiple members of the Flaviviridae family

in RNA Bioinformatics

H. W. Cayatineto
S. T. Hakim

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1487292

2,232 views

Brief Research Report

Published on 09 Jan 2025

Detection of reproducible liver cancer specific ligand-receptor signaling in blood

in Integrative Bioinformatics

Aram Safrastyan
Damian Wollny

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1332782

2,259 views

Editorial

Published on 07 Jan 2025

Editorial: Multi-omics approaches in the study of human disease mechanisms

in Integrative Bioinformatics

Dapeng Wang
Giuseppe Agapito

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1546680

3,167 views
3 citations

Original Research

Published on 06 Jan 2025

In silico identification of chilli genome encoded MicroRNAs targeting the 16S rRNA and secA genes of “Candidatus phytoplasma trifolii”

in RNA Bioinformatics

Vineeta Pandey
Aarshi Srivastava
Ramwant Gupta
Haitham E. M. Zaki
Muhammad Shafiq Shahid
Rajarshi K. Gaur

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1493712

2,585 views
1 citation

Technology and Code

Published on 20 Dec 2024

PRONAME: a user-friendly pipeline to process long-read nanopore metabarcoding data by generating high-quality consensus sequences

in Integrative Bioinformatics

Benjamin Dubois
Mathieu Delitte
Salomé Lengrand
Claude Bragard
Anne Legrève
Frédéric Debode

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1483255

8,753 views
10 citations

Opinion

Published on 16 Dec 2024

Unlocking the future of complex human diseases prediction: multi-omics risk score breakthrough

in Genomic Analysis

Benson R. Kidenya
Gerald Mboowa

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1510352

4,159 views
9 citations

Brief Research Report

Published on 16 Dec 2024

Completing a molecular timetree of primates

in Evolutionary Bioinformatics

Jack M. Craig
S. Blair Hedges
Sudhir Kumar

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1495417

8,709 views
4 citations

Original Research

Published on 06 Dec 2024

Time-calibrated phylogeny of neotropical freshwater fishes

in Evolutionary Bioinformatics

Victor A. Tagliacollo
Milton Tan
Roberto E. Reis
Ronielson Gaia
Virgilio Carrijo
Marcelo Ranuzi
Jack M. Craig
James S. Albert

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1433995

9,549 views
6 citations

Technology and Code

Published on 15 Nov 2024

Benchmarking of Hi-C tools for scaffolding plant genomes obtained from PacBio HiFi and ONT reads

in Genomic Analysis

Lia Obinu
Urmi Trivedi
Andrea Porceddu

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1462923

6,078 views
5 citations

Original Research

Published on 13 Nov 2024

Climatic factors, but not geographic distance, promote genetic structure and differentiation of Cleistogenes squarrosa (Trin.) Keng populations

in Genomic Analysis

Ruyan Song
Xueli Zhang
Zhuo Zhang
Chan Zhou

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1454689

2,230 views
1 citation

Technology and Code

Published on 21 Oct 2024

Quantification of muscle fiber malformations using edge detection to investigate chronic muscle pressure ulcers

in Computational BioImaging

Charlene Z. L. Ong
N. Jannah M. Nasir
Roy E. Welsch
Lisa Tucker-Kellogg
Jagath C. Rajapakse

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1450146

2,207 views

Original Research

Published on 18 Oct 2024

Identification of novel drug targets for Helicobacter pylori: structure-based virtual screening of potential inhibitors against DAH7PS protein involved in the shikimate pathway

in Drug Discovery in Bioinformatics

Narjes Noori Goodarzi
Mahshid Khazani Asforooshani
Behzad Shahbazi
Nayereh Rezaie Rahimi
Farzad Badmasti

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1482338

4,632 views
7 citations

Original Research

Published on 18 Oct 2024

DCMA: faster protein backbone dihedral angle prediction using a dilated convolutional attention-based neural network

in Protein Bioinformatics

Buzhong Zhang
Meili Zheng
Yuzhou Zhang
Lijun Quan

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1477909

2,099 views

Brief Research Report

Published on 18 Oct 2024

Computational identification and characterization of chitinase 1 and chitinase 2 from neotropical isolates of Beauveria bassiana

in Genomic Analysis

Juan Segura-Vega
Allan González-Herrera
Ramón Molina-Bravo
Stefany Solano-González

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1434442

2,742 views
3 citations

Editorial

Published on 08 Oct 2024

Editorial: Women in bioinformatics

in Single Cell Bioinformatics

Irma Martínez-Flores
Constanza Cárdenas Carvajal
Viviana Monje-Galvan

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1499514

1,981 views

Methods

Published on 07 Oct 2024

In silico PCR analysis: a comprehensive bioinformatics tool for enhancing nucleic acid amplification assays

in Genomic Analysis

Ruslan Kalendar
Alexandr Shevtsov
Zhenis Otarbay
Aisulu Ismailova

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1464197

18,912 views
15 citations

Original Research

Published on 04 Oct 2024

Discovery of plasma biomarkers related to blood-brain barrier dysregulation in Alzheimer’s disease

in Integrative Bioinformatics

Yuet Ruh Dan
Keng-Hwee Chiam

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1463001

5,669 views
2 citations

Brief Research Report

Published on 02 Oct 2024

A time-calibrated phylogeny of the diversification of Holoadeninae frogs

in Evolutionary Bioinformatics

Júlio C. M. Chaves
Fábio Hepp
Carlos G. Schrago
Beatriz Mello

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1441373

3,092 views

Technology and Code

Published on 27 Sep 2024

SciJava Ops: an improved algorithms framework for Fiji and beyond

in Computational BioImaging

Gabriel J. Selzer
Curtis T. Rueden
Mark C. Hiner
Edward L. Evans
David Kolb
Marcel Wiedenmann
Christian Birkhold
Tim-Oliver Buchholz
Stefan Helfrich
Brian Northan

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1435733

4,121 views

Original Research

Published on 26 Sep 2024

Pangenome comparison via ED strings

in Genomic Analysis

Esteban Gabory
Moses Njagi Mwaniki
Nadia Pisanti
Solon P. Pissis
Jakub Radoszewski
Michelle Sweering
Wiktor Zuba

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1397036

2,865 views
3 citations

Methods

Published on 23 Sep 2024

QSPRmodeler - An open source application for molecular predictive analytics

in Drug Discovery in Bioinformatics

Rafał A. Bachorz
Damian Nowak
Marcin Ratajewski

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1441024

2,854 views
1 citation

Original Research

Published on 12 Sep 2024

The quantum hypercube as a k-mer graph

in Genomic Analysis

Gustavo Becerra-Gavino
Liliana Ibeth Barbosa-Santillan

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1401223

2,364 views

Review

Published on 10 Sep 2024

A review of model evaluation metrics for machine learning in genetics and genomics

in Genomic Analysis

Catriona Miller
Theo Portlock
Denis M. Nyaga
Justin M. O’Sullivan

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1457619

18,855 views
72 citations

Original Research

Published on 10 Sep 2024

Visual analysis of multi-omics data

in Data Visualization

Austin Swart
Ron Caspi
Suzanne Paley
Peter D. Karp

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1395981

3,930 views
2 citations

611 articles

articles

hsa-miR-548d-3p: a potential microRNA to target nucleocapsid and/or capsid genes in multiple members of the Flaviviridae family

Detection of reproducible liver cancer specific ligand-receptor signaling in blood

Editorial: Multi-omics approaches in the study of human disease mechanisms

In silico identification of chilli genome encoded MicroRNAs targeting the 16S rRNA and secA genes of “Candidatus phytoplasma trifolii”

PRONAME: a user-friendly pipeline to process long-read nanopore metabarcoding data by generating high-quality consensus sequences

Unlocking the future of complex human diseases prediction: multi-omics risk score breakthrough

Completing a molecular timetree of primates

Time-calibrated phylogeny of neotropical freshwater fishes

Benchmarking of Hi-C tools for scaffolding plant genomes obtained from PacBio HiFi and ONT reads

Climatic factors, but not geographic distance, promote genetic structure and differentiation of Cleistogenes squarrosa (Trin.) Keng populations

Quantification of muscle fiber malformations using edge detection to investigate chronic muscle pressure ulcers

Identification of novel drug targets for Helicobacter pylori: structure-based virtual screening of potential inhibitors against DAH7PS protein involved in the shikimate pathway

DCMA: faster protein backbone dihedral angle prediction using a dilated convolutional attention-based neural network

Computational identification and characterization of chitinase 1 and chitinase 2 from neotropical isolates of Beauveria bassiana

Editorial: Women in bioinformatics

In silico PCR analysis: a comprehensive bioinformatics tool for enhancing nucleic acid amplification assays

Discovery of plasma biomarkers related to blood-brain barrier dysregulation in Alzheimer’s disease

A time-calibrated phylogeny of the diversification of Holoadeninae frogs

SciJava Ops: an improved algorithms framework for Fiji and beyond

Pangenome comparison via ED strings

QSPRmodeler - An open source application for molecular predictive analytics

The quantum hypercube as a k-mer graph

A review of model evaluation metrics for machine learning in genetics and genomics

Visual analysis of multi-omics data