Frontiers in Bioinformatics

Editorial

Published on 09 Aug 2024

Editorial: Big data and artificial intelligence for genomics and therapeutics – Proceedings of the 19th Annual Meeting of the MidSouth Computational Biology and Bioinformatics Society (MCBIOS)

in Integrative Bioinformatics

Huixiao Hong
Inimary Toby-Ogundeji
Robert J. Doerksen
Zhaohui Steve Qin

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1470107

734 views

Editorial

Published on 09 Aug 2024

Editorial: Machine learning approaches to antimicrobials: discovery and resistance

in Drug Discovery in Bioinformatics

Shira L. Broschat
Shirley W. I. Siu
Cesar de la Fuente-Nunez

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1458237

1,317 views

Original Research

Published on 26 Jul 2024

Predictive identification and design of potent inhibitors targeting resistance-inducing candidate genes from E. coli whole-genome sequences

in Integrative Bioinformatics

Abdullahi Tunde Aborode
Neeraj Kumar
Christopher Busayo Olowosoke
Tope Abraham Ibisanmi
Islamiyyah Ayoade
Haruna Isiyaku Umar
Abdullahi Temitope Jamiu
Basit Bolarinwa
Zainab Olapade
Abidemi Ruth Idowu

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1411935

2,358 views

Original Research

Published on 25 Jul 2024

A hybrid approach for predicting transcription factors

in Protein Bioinformatics

Sumeet Patiyal
Palak Tiwari
Mohit Ghai
Aman Dhapola
Anjali Dhall
Gajendra P. S. Raghava

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1425419

1,304 views

Original Research

Published on 15 Jul 2024

CAEM-GBDT: a cancer subtype identifying method using multi-omics data and convolutional autoencoder network

in Integrative Bioinformatics

Jiquan Shen
Xuanhui Guo
Hanwen Bai
Junwei Luo

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1403826

884 views

Original Research

Published on 10 Jul 2024

AUTO-TUNE: selecting the distance threshold for inferring HIV transmission clusters

in Evolutionary Bioinformatics

Steven Weaver
Vanessa M. Dávila Conn
Daniel Ji
Hannah Verdonk
Santiago Ávila-Ríos
Andrew J. Leigh Brown
Joel O. Wertheim
Sergei L. Kosakovsky Pond

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1400003

1,329 views

Mini Review

Published on 08 Jul 2024

A systematic overview of single-cell transcriptomics databases, their use cases, and limitations

in Single Cell Bioinformatics

Mahnoor N. Gondal
Saad Ur Rehman Shah
Arul M. Chinnaiyan
Marcin Cieslik

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1417428

4,940 views

Original Research

Published on 08 Jul 2024

Network analysis of driver genes in human cancers

in Network Bioinformatics

Shruti S. Patil
Steven A. Roberts
Assefaw H. Gebremedhin

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1365200

1,549 views

Review

Published on 03 Jul 2024

DNA structural features and variability of complete MHC locus sequences

in Genomic Analysis

Trudy M. Wassenaar
Terry Harville
Jonathan Chastain
Visanu Wanchai
David W. Ussery

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1392613

1,528 views

Original Research

Published on 01 Jul 2024

Maximum-scoring path sets on pangenome graphs of constant treewidth

in Genomic Analysis

Broňa Brejová
Travis Gagie
Eva Herencsárová
Tomáš Vinař

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1391086

796 views

Original Research

Published on 24 Jun 2024

The evolution of mammalian Rem2: unraveling the impact of purifying selection and coevolution on protein function, and implications for human disorders

in Evolutionary Bioinformatics

Alexander G. Lucaci
William E. Brew
Jason Lamanna
Avery Selberg
Vincenzo Carnevale
Anna R. Moore
Sergei L. Kosakovsky Pond

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1381540

1,232 views

Perspective

Published on 20 Jun 2024

Bioinformatics proficiency among African students

in Protein Bioinformatics

Ashraf Akintayo Akintola
Abdullahi Tunde Aborode
Muhammed Taofiq Hamza
Augustine Amakiri
Benjamin Moore
Suliat Abdulai
Oluyinka Ajibola Iyiola
Lateef Adegboyega Sulaimon
Effiong Effiong
Adedeji Ogunyemi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1328714

2,143 views

Original Research

Published on 19 Jun 2024

A comprehensive multi-omics analysis reveals unique signatures to predict Alzheimer’s disease

in Integrative Bioinformatics

Michael Vacher
Rodrigo Canovas
Simon M. Laws
James D. Doecke

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1390607

2,114 views
2 citations

Original Research

Published on 24 May 2024

Human cytokine and coronavirus nucleocapsid protein interactivity using large-scale virtual screens

in Protein Bioinformatics

Phillip J. Tomezsko
Colby T. Ford
Avery E. Meyer
Adam M. Michaleas
Rafael Jaimes

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1397968

2,018 views
7 citations

Original Research

Published on 24 May 2024

Effects of highly active antiretroviral therapy initiation on epigenomic DNA methylation in persons living with HIV

in Genomic Analysis

Joshua Zhang
Mary E. Sehl
Roger Shih
Elizabeth Crabb Breen
Fengxue Li
Ake T. Lu
Jay H. Bream
Priya Duggal
Jeremy Martinson
Steven M. Wolinsky

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1357889

2,095 views

Original Research

Published on 24 May 2024

Decreased but persistent epigenetic age acceleration is associated with changes in T-cell subsets after initiation of highly active antiretroviral therapy in persons living with HIV

in Genomic Analysis

Mary E. Sehl
Elizabeth Crabb Breen
Roger Shih
Fengxue Li
Joshua Zhang
Peter Langfelder
Steve Horvath
Jay H. Bream
Priya Duggal
Jeremy Martinson

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1356509

2,045 views
1 citation

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Articles

Editorial: Big data and artificial intelligence for genomics and therapeutics – Proceedings of the 19th Annual Meeting of the MidSouth Computational Biology and Bioinformatics Society (MCBIOS)

Editorial: Machine learning approaches to antimicrobials: discovery and resistance

Predictive identification and design of potent inhibitors targeting resistance-inducing candidate genes from E. coli whole-genome sequences

A hybrid approach for predicting transcription factors

CAEM-GBDT: a cancer subtype identifying method using multi-omics data and convolutional autoencoder network

AUTO-TUNE: selecting the distance threshold for inferring HIV transmission clusters

A systematic overview of single-cell transcriptomics databases, their use cases, and limitations

Network analysis of driver genes in human cancers

DNA structural features and variability of complete MHC locus sequences

Maximum-scoring path sets on pangenome graphs of constant treewidth

The evolution of mammalian Rem2: unraveling the impact of purifying selection and coevolution on protein function, and implications for human disorders

Bioinformatics proficiency among African students

A comprehensive multi-omics analysis reveals unique signatures to predict Alzheimer’s disease

Human cytokine and coronavirus nucleocapsid protein interactivity using large-scale virtual screens

Effects of highly active antiretroviral therapy initiation on epigenomic DNA methylation in persons living with HIV

Decreased but persistent epigenetic age acceleration is associated with changes in T-cell subsets after initiation of highly active antiretroviral therapy in persons living with HIV