volumes

Volume 3 - 2023

Original Research

Published on 09 Mar 2023

Deep convolutional neural networks using an active learning strategy for cervical cancer screening and diagnosis

Xueguang Li
Mingyue Du
Shanru Zuo
Mingqing Zhou
Qiyao Peng
Ziyao Chen
Junhua Zhou
Quanyuan He

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1101667

4,824 views
12 citations

Original Research

Published on 08 Mar 2023

Immersive and interactive visualization of 3D spatio-temporal data using a space time hypercube: Application to cell division and morphogenesis analysis

Gwendal Fouché
Ferran Argelaguet
Emmanuel Faure
Charles Kervrann

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.998991

6,198 views
9 citations

Review

Published on 03 Mar 2023

Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters

Fotis A. Baltoumas
Evangelos Karatzas
David Paez-Espino
Nefeli K. Venetsianou
Eleni Aplakidou
Anastasis Oulas
Robert D. Finn
Sergey Ovchinnikov
Evangelos Pafilis
Nikos C. Kyrpides

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1157956

11,233 views
14 citations

Mini Review

Published on 28 Feb 2023

Before and after AlphaFold2: An overview of protein structure prediction

Letícia M. F. Bertoline
Angélica N. Lima
Jose E. Krieger
Samantha K. Teixeira

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1120370

90,093 views
236 citations

Review

Published on 24 Feb 2023

Enhancer/gene relationships: Need for more reliable genome-wide reference sets

Tristan Hoellinger
Camille Mestre
Hugues Aschard
Wilfried Le Goff
Sylvain Foissac
Thomas Faraut
Sarah Djebali

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1092853

5,878 views
7 citations

Opinion

Published on 23 Feb 2023

Perspective on the challenges and opportunities of accelerating drug discovery with artificial intelligence

John P. Santa Maria
Yuan Wang
Luiz Miguel Camargo

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1121591

10,470 views
21 citations

Original Research

Published on 21 Feb 2023

Protein domains provide a new layer of information for classifying human variations in rare diseases

Mélanie Corcuff
Marc Garibal
Jean-Pierre Desvignes
Céline Guien
Coralie Grattepanche
Gwenaëlle Collod-Béroud
Estelle Ménoret
David Salgado
Christophe Béroud

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1127341

3,913 views
3 citations

Original Research

Published on 17 Feb 2023

Virulence network of interacting domains of influenza a and mouse proteins

Teng Ann Ng
Shamima Rashid
Chee Keong Kwoh

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1123993

2,974 views
2 citations

Data Report

Published on 16 Feb 2023

Propedia v2.3: A novel representation approach for the peptide-protein interaction database using graph-based structural signatures

Pedro Martins
Diego Mariano
Frederico Chaves Carvalho
Luana Luiza Bastos
Lucas Moraes
Vivian Paixão
Raquel Cardoso de Melo-Minardi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1103103

7,154 views
25 citations

Original Research

Published on 15 Feb 2023

Bayesian logical neural networks for human-centered applications in medicine

Juan G. Diaz Ochoa
Lukas Maier
Orsolya Csiszar

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1082941

3,554 views
4 citations

Original Research

Published on 14 Feb 2023

CASBERT: BERT-based retrieval for compositely annotated biosimulation model entities

Yuda Munarko
Anand Rampadarath
David P. Nickerson

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1107467

2,968 views
4 citations

Perspective

Published on 09 Feb 2023

Multi-omics of extracellular vesicles: An integrative representation of functional mediators and perspectives on lung disease study

Yuexing Liu
Yixue Li
Tao Zeng

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1117271

4,160 views
13 citations

Original Research

Published on 08 Feb 2023

Adding context to the pneumococcal core genes using bioinformatic analysis of the intergenic pangenome of Streptococcus pneumoniae

Flemming Damgaard Nielsen
Jakob Møller-Jensen
Mikkel Girke Jørgensen

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1074212

3,163 views
2 citations

Opinion

Published on 08 Feb 2023

Visualising disease trajectories from population-wide data

Jessica Xin Hjaltelin
Hannah Currant
Isabella Friis Jørgensen
Søren Brunak

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1112113

6,981 views
6 citations

Data Report

Published on 07 Feb 2023

PanViTa: Pan Virulence and resisTance analysis

Diego Lucas Neres Rodrigues
Juan Carlos Ariute
Francielly Morais Rodrigues da Costa
Ana Maria Benko-Iseppon
Debmalya Barh
Vasco Azevedo
Flávia Aburjaile

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1070406

5,026 views
22 citations

Methods

Published on 03 Feb 2023

A computer vision framework for quantification of feather growth patterns

Tyler N. Thompson
Anna Vickrey
Michael D. Shapiro
Edward Hsu

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1073918

2,310 views
2 citations

Original Research

Published on 16 Jan 2023

A refined pH-dependent coarse-grained model for peptide structure prediction in aqueous solution

Pierre Tufféry
Philippe Derreumaux

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1113928

4,237 views
13 citations

Original Research

Published on 13 Jan 2023

Comprehensive genome-scale metabolic model of the human pathogen Cryptococcus neoformans: A platform for understanding pathogen metabolism and identifying new drug targets

Enes Fahri Tezcan
Yigit Demirtas
Zeynep Petek Cakar
Kutlu O. Ulgen

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1121409

4,769 views
9 citations

Volume 2 - 2022

Original Research

Published on 08 Feb 2023

An assessment of bioinformatics tools for the detection of human endogenous retroviral insertions in short-read genome sequencing data

Harry Bowles
Renata Kabiljo
Ahmad Al Khleifat
Ashley Jones
John P. Quinn
Richard J. B. Dobson
Chad M. Swanson
Ammar Al-Chalabi
Alfredo Iacoangeli

Frontiers in Bioinformatics

doi 10.3389/fbinf.2022.1062328

7,454 views
6 citations

Original Research

Published on 13 Jan 2023

Interactive extraction of diverse vocal units from a planar embedding without the need for prior sound segmentation

Corinna Lorenz
Xinyu Hao
Tomas Tomka
Linus Rüttimann
Richard H.R. Hahnloser

Frontiers in Bioinformatics

doi 10.3389/fbinf.2022.966066

3,755 views
4 citations

Review

Published on 11 Jan 2023

CRISPR genome editing using computational approaches: A survey

Roghayyeh Alipanahi
Leila Safari
Alireza Khanteymoori

Frontiers in Bioinformatics

doi 10.3389/fbinf.2022.1001131

11,474 views
18 citations

Original Research

Published on 06 Jan 2023

The META tool optimizes metagenomic analyses across sequencing platforms and classifiers

Robert A. Player
Angeline M. Aguinaldo
Brian B. Merritt
Lisa N. Maszkiewicz
Oluwaferanmi E. Adeyemo
Ellen R. Forsyth
Kathleen J. Verratti
Brant W. Chee
Sarah L. Grady
Christopher E. Bradburne

Frontiers in Bioinformatics

doi 10.3389/fbinf.2022.969247

5,393 views

Original Research

Published on 22 Dec 2022

Inference of dynamic interaction networks: A comparison between Lotka-Volterra and multivariate autoregressive models

Daniel V. Olivença
Jacob D. Davis
Eberhard O. Voit

Frontiers in Bioinformatics

doi 10.3389/fbinf.2022.1021838

3,999 views
9 citations

Systematic Review

Published on 22 Dec 2022

Algorithms to anonymize structured medical and healthcare data: A systematic review

Ali Sepas
Ali Haider Bangash
Omar Alraoui
Khaled El Emam
Alaa El-Hussuna

Frontiers in Bioinformatics

doi 10.3389/fbinf.2022.984807

11,841 views
14 citations