Frontiers in Ecology and Evolution | Phylogenetics, Phylogenomics, and Systematics

Original Research

Accepted on 10 Feb 2026

Comparative genome analysis using whole genome sequences suggests ongoing speciation between Priestia aryabhattai and Priestia megaterium

in Phylogenetics, Phylogenomics, and Systematics

Sam Spence
Akira Uchida
Ngu War Aung
Justine G.A. Dacanay
Serene Boon-Yuean Lim
Daniela I. Drautz-Moses
Stephan C. Schuster
Hie Lim Kim

Frontiers in Ecology and Evolution

Data Report

Published on 30 Jan 2026

Complete chloroplast genome assembly of Rubroshorea leprosula wood from Indonesia for phylogenetic and conservation studies

in Phylogenetics, Phylogenomics, and Systematics

Ainun Fadilah
Agus Hikmat
Lina Karlinasari
Fifi Gus Dwiyanti
Rahadian Pratama
Faizal Maulana
Irsyad Kamal
Dhika Syaputra
Iskandar Zulkarnaen Siregar

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2026.1751419

1,503 views

Brief Research Report

Published on 13 Jan 2026

Evolution of cytochrome P450 gene superfamily in different cellular organisms

in Phylogenetics, Phylogenomics, and Systematics

Yuxia Shi
Shu Zong
Hejian Zhang
Shuo Liu
Junru Yang
Lina Lu
Xiaonan Liu
Jian Cheng
Huifeng Jiang

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2025.1713618

1,103 views

Original Research

Published on 20 Aug 2025

Rapid radiations underlie most of the known diversity of life

in Phylogenetics, Phylogenomics, and Systematics

John J. Wiens
Daniel S. Moen

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2025.1596591

8,093 views
1 citation

Original Research

Published on 28 Apr 2025

Comparative analysis of five mitochondrial genomes of the subfamily Galerucinae (Coleoptera: Chrysomelidae) and evolution of control regions inferred from phylogeny

in Phylogenetics, Phylogenomics, and Systematics

Shiwen Xu
Pu Miao
Qiaoqiao Liu
Fan Song
Hailin Yang
Zhenyuan Xia
Weidong Huang

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2025.1495703

2,714 views
2 citations

Original Research

Published on 23 Apr 2025

Genome-based classification and phylogenetic revision of the family Colwelliaceae with proposals for new genera and species

in Phylogenetics, Phylogenomics, and Systematics

Min Seo Lee
Sung-Hyun Yang
Yun Jae Kim
Yeong-Jun Park
Mi-Jeong Park
Kae Kyoung Kwon

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2025.1532186

4,357 views
7 citations

Original Research

Published on 31 Mar 2025

The fall and rise of Diopatra in Southern Brazilian sandy beaches

in Phylogenetics, Phylogenomics, and Systematics

Paulo Cesar Paiva
Antonia Cecilia Zacagnini Amaral
Victor Correa Seixas
Mônica Angélica Varella Petti
Tatiana Menchini Steiner

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2025.1547300

5,018 views

Data Report

Published on 18 Feb 2025

Complete mitochondrial genomes of the Eastern lowland olingo (Bassaricyon alleni), ringtail (Bassariscus astutus), white-nosed coati (Nasua narica), and crab-eating raccoon (Procyon cancrivorus) elucidate the phylogeny of the Procyonidae

in Phylogenetics, Phylogenomics, and Systematics

Heather R. Willis
Medhini S. Sosale
Cody W. Edwards
Henrique V. Figueiró
Anna Zhuk
Klaus-Peter Koepfli

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2025.1518714

2,735 views

Original Research

Published on 29 Aug 2024

The complete mitochondrial genomes of three Evacanthini species, Evacanthus bivittatus, Carinata ganga, and Carinata recurvata, and phylogenomic analysis of the Evacanthini

in Phylogenetics, Phylogenomics, and Systematics

Sai Jiang
Ran Li
Lina Jiang
Wei Wang
Yongcheng Liu
Yuewei Yang
Zizhong Li

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2024.1410546

1,709 views
2 citations

Original Research

Published on 17 Jul 2024

The taxonomic composition and chronology of a museum collection of Coleoptera revealed through large-scale digitisation

in Phylogenetics, Phylogenomics, and Systematics

Beulah H. Garner
Thomas J. Creedy
Elizabeth L. Allan
Robyn Crowther
Elizabeth Devenish
Phaedra Kokkini
Laurence Livermore
Krisztina Lohonya
Nicola Lowndes
Peter Wing

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2024.1305931

11,785 views
3 citations

Original Research

Published on 08 Jul 2024

Challenges of molecular barcode-based identification of earthworm specimens for biodiversity assessment

in Phylogenetics, Phylogenomics, and Systematics

Andréa Barraux
Shanèze Noël
Virginie Roy
Lise Dupont

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2024.1358984

4,101 views
3 citations

Original Research

Published on 01 May 2024

The geographic and phylogenetic structure of public DNA barcode databases: an assessment using Chrysomelidae (leaf beetles)

in Phylogenetics, Phylogenomics, and Systematics

Ellie Lo
Rui-E Nie
Alfried P. Vogler

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2024.1305898

4,842 views
5 citations

Correction

Published on 26 Mar 2024

Corrigendum: The Taxonomic Revolution of New World dung beetles (Coleoptera: Scarabaeidae: Scarabaeinae)

in Phylogenetics, Phylogenomics, and Systematics

Mario Cupello
Fernando A. B. Silva
Fernando Z. Vaz-De-Mello

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2024.1369318

2,853 views

Original Research

Published on 12 Mar 2024

Five new species of Terebellides (Annelida, Polychaeta, Trichobranchidae) from Papua New Guinea (Bismarck and Solomon seas)

in Phylogenetics, Phylogenomics, and Systematics

Nicolas Lavesque
João M. M. Nogueira
Guillemine Daffe
Pat Hutchings

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2024.1349362

2,998 views
3 citations

Original Research

Published on 22 Feb 2024

Exploring genetic variation and phylogenetic patterns of Tropilaelaps mercedesae (Mesostigmata: Laelapidae) populations in Asia

in Phylogenetics, Phylogenomics, and Systematics

Saeed Mohamadzade Namin
Omid Joharchi
Sunil Aryal
Ratna Thapa
Sun-Ho Kwon
Boymakhmat A. Kakhramanov
Chuleui Jung

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2024.1275995

5,157 views
15 citations

Original Research

Published on 16 Feb 2024

Delimiting the polymorphic congeners of the genus Oerstedia Quatrefages, 1864 (Nemertea, Hoplonemertea), and descriptions of three new species from the Northwest Pacific

in Phylogenetics, Phylogenomics, and Systematics

Jamael C. Abato
Alexei V. Chernyshev
Natsumi Hookabe
Aoi Tsuyuki
Gauri Kaushik
Hiroshi Kajihara

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2024.1356316

3,915 views
4 citations

Original Research

Published on 12 Feb 2024

Out of the ocean: the timescale of molluscan evolution based on phylogenomics revealed the ages of mollusks’ evolutionary transitions into the novel environment

in Phylogenetics, Phylogenomics, and Systematics

Xiaolu Han
Shaolei Sun
Yiting Wang
Mengyuan Liu
Bonian Shui
Zhiqiang Han

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2024.1327007

11,014 views
8 citations

Original Research

Published on 30 Jan 2024

Incomplete lineage sorting and long-branch attraction confound phylogenomic inference of Pancrustacea

in Phylogenetics, Phylogenomics, and Systematics

Hiu Yan Yu
Ka Hou Chu
Ling Ming Tsang
Ka Yan Ma

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2024.1243221

8,518 views
13 citations

Data Report

Published on 22 Jan 2024

The complete mitogenome of the Cape fox, Vulpes chama (Canidae: Mammalia)

in Phylogenetics, Phylogenomics, and Systematics

Autumn Gray
Anna S. Zhuk
Jan F. Kamler
Cody W. Edwards
Henrique V. Figueiró
Klaus-Peter Koepfli

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2024.1291268

4,596 views
1 citation

Original Research

Published on 09 Jan 2024

Revealing genetic diversity, population structure, and selection signatures of the Pacific oyster in Dalian by whole-genome resequencing

in Phylogenetics, Phylogenomics, and Systematics

Junxia Mao
Ying Tian
Qian Liu
Danyang Li
Xinfan Ge
Xubo Wang
Zhenlin Hao

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2023.1337980

3,532 views
11 citations

Original Research

Published on 08 Jan 2024

Early burst of parallel evolution describes the diversification of gecko toe pads

in Phylogenetics, Phylogenomics, and Systematics

Jenny McCann
Travis J. Hagey

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2023.1334870

4,911 views
2 citations

Editorial

Published on 17 Nov 2023

Editorial: Neotropical dung beetle diversity: ecological, historical, and anthropogenic perspectives

in Phylogenetics, Phylogenomics, and Systematics

Mario E. Favila
Jorge Ari Noriega
Pedro Giovâni da Silva
Vanesca Korasaki

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2023.1294471

2,120 views
4 citations

Original Research

Published on 27 Oct 2023

Long amplicons as a tool to identify variable regions of ribosomal RNA for improved taxonomic resolution and diagnostic assay design in microeukaryotes: using ascetosporea as a case study

in Phylogenetics, Phylogenomics, and Systematics

Chantelle Hooper
Georgia M. Ward
Rachel Foster
Ilze Skujina
Joseph E. Ironside
Cédric Berney
David Bass

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2023.1266151

3,250 views
4 citations

Original Research

Published on 25 Oct 2023

Skin transcriptomic correlates of cave-dwelling Sinocyclocheilus cavefish

in Phylogenetics, Phylogenomics, and Systematics

Xiayue Luo
Bing Chen
Tingru Mao
Yewei Liu
Jian Yang
Madhava Meegaskumbura

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2023.1264214

3,751 views
4 citations

180 articles

articles

Comparative genome analysis using whole genome sequences suggests ongoing speciation between Priestia aryabhattai and Priestia megaterium

Complete chloroplast genome assembly of Rubroshorea leprosula wood from Indonesia for phylogenetic and conservation studies

Evolution of cytochrome P450 gene superfamily in different cellular organisms

Rapid radiations underlie most of the known diversity of life

Comparative analysis of five mitochondrial genomes of the subfamily Galerucinae (Coleoptera: Chrysomelidae) and evolution of control regions inferred from phylogeny

Genome-based classification and phylogenetic revision of the family Colwelliaceae with proposals for new genera and species

The fall and rise of Diopatra in Southern Brazilian sandy beaches

Complete mitochondrial genomes of the Eastern lowland olingo (Bassaricyon alleni), ringtail (Bassariscus astutus), white-nosed coati (Nasua narica), and crab-eating raccoon (Procyon cancrivorus) elucidate the phylogeny of the Procyonidae

The complete mitochondrial genomes of three Evacanthini species, Evacanthus bivittatus, Carinata ganga, and Carinata recurvata, and phylogenomic analysis of the Evacanthini

The taxonomic composition and chronology of a museum collection of Coleoptera revealed through large-scale digitisation

Challenges of molecular barcode-based identification of earthworm specimens for biodiversity assessment

The geographic and phylogenetic structure of public DNA barcode databases: an assessment using Chrysomelidae (leaf beetles)

Corrigendum: The Taxonomic Revolution of New World dung beetles (Coleoptera: Scarabaeidae: Scarabaeinae)

Five new species of Terebellides (Annelida, Polychaeta, Trichobranchidae) from Papua New Guinea (Bismarck and Solomon seas)

Exploring genetic variation and phylogenetic patterns of Tropilaelaps mercedesae (Mesostigmata: Laelapidae) populations in Asia

Delimiting the polymorphic congeners of the genus Oerstedia Quatrefages, 1864 (Nemertea, Hoplonemertea), and descriptions of three new species from the Northwest Pacific

Out of the ocean: the timescale of molluscan evolution based on phylogenomics revealed the ages of mollusks’ evolutionary transitions into the novel environment

Incomplete lineage sorting and long-branch attraction confound phylogenomic inference of Pancrustacea

The complete mitogenome of the Cape fox, Vulpes chama (Canidae: Mammalia)

Revealing genetic diversity, population structure, and selection signatures of the Pacific oyster in Dalian by whole-genome resequencing

Early burst of parallel evolution describes the diversification of gecko toe pads

Editorial: Neotropical dung beetle diversity: ecological, historical, and anthropogenic perspectives

Long amplicons as a tool to identify variable regions of ribosomal RNA for improved taxonomic resolution and diagnostic assay design in microeukaryotes: using ascetosporea as a case study

Skin transcriptomic correlates of cave-dwelling Sinocyclocheilus cavefish