Frontiers in Ecology and Evolution | Phylogenetics, Phylogenomics, and Systematics

Original Research

Published on 14 Jun 2022

Secondary DNA Barcodes (CAM, GAPDH, GS, and RpB2) to Characterize Species Complexes and Strengthen the Powdery Mildew Phylogeny

in Phylogenetics, Phylogenomics, and Systematics

Michael J. Bradshaw
Guan-Xiu Guan
Liam Nokes
Uwe Braun
Shu-Yan Liu
Donald H. Pfister

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2022.918908

6,002 views
41 citations

Original Research

Published on 07 Jun 2022

Regulating Strategies of Transcription and Alternative Splicing for Cold Tolerance Harpadon nehereus Fish

in Phylogenetics, Phylogenomics, and Systematics

Zhicheng Sun
Liangliang Huang
Yefu Kong
Linlong Wang
Bin Kang

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2022.912113

2,427 views
8 citations

Brief Research Report

Published on 23 May 2022

Poor hDNA-Derived NGS Data May Provide Sufficient Phylogenetic Information of Potentially Extinct Taxa

in Phylogenetics, Phylogenomics, and Systematics

Catharina Clewing
Christian Kehlmaier
Björn Stelbrink
Christian Albrecht
Thomas Wilke

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2022.907889

3,351 views
4 citations

Hypothesis and Theory

Published on 14 Apr 2022

Lack of Statistical Rigor in DNA Barcoding Likely Invalidates the Presence of a True Species' Barcode Gap

in Phylogenetics, Phylogenomics, and Systematics

Jarrett D. Phillips
Daniel J. Gillis
Robert H. Hanner

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2022.859099

9,046 views
39 citations

Original Research

Published on 29 Mar 2022

How to Accurately Delineate Morphologically Conserved Taxa and Diagnose Their Phenotypic Disparities: Species Delimitation in Cryptic Rhinolophidae (Chiroptera)

in Phylogenetics, Phylogenomics, and Systematics

Ada Chornelia
Jianmei Lu
Alice Catherine Hughes

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2022.854509

13,835 views
36 citations

Editorial

Published on 01 Mar 2022

Editorial: Biology, Systematics, Taxonomy, and Evolution of Insect Vectors

in Phylogenetics, Phylogenomics, and Systematics

Kaio Cesar Chaboli Alevi
Cleber Galvão
Mauro Toledo Marrelli
André Barretto Bruno Wilke
Wanzhi Cai
Jader de Oliveira

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2022.858886

2,750 views
1 citation

Original Research

Published on 22 Feb 2022

Phylogenetic Reconstruction of the Ancestral Chromosome Number of the Genera Anochetus Mayr, 1861 and Odontomachus Latreille, 1804 (Hymenoptera: Formicidae: Ponerinae)

in Phylogenetics, Phylogenomics, and Systematics

Paulo C. Afonso Neto
Ricardo Micolino
Danon Clemes Cardoso
Maykon Passos Cristiano

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2022.829989

3,913 views
6 citations

Original Research

Published on 02 Feb 2022

Genome-Wide Identification and Comparative Analysis of WRKY Transcription Factors Related to Momilactone Biosynthesis in Calohypnum plumiforme

in Phylogenetics, Phylogenomics, and Systematics

Yao Wang
Ruiyan Zhu
Min Shi
Qikai Huang
Siwei Zhang
Guoyin Kai
Shuiliang Guo

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2021.809729

3,387 views
5 citations

Original Research

Published on 28 Jan 2022

Phylogenomic Analysis of the Phylum Nematoda: Conflicts and Congruences With Morphology, 18S rRNA, and Mitogenomes

in Phylogenetics, Phylogenomics, and Systematics

Mohammed Ahmed
Nickellaus G. Roberts
Funmilola Adediran
Ashleigh B. Smythe
Kevin M. Kocot
Oleksandr Holovachov

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2021.769565

22,073 views
74 citations

Original Research

Published on 12 Jan 2022

Phylogenomics for Chagas Disease Vectors of the Rhodnius Genus (Hemiptera, Triatominae): What We Learn From Mito-Nuclear Conflicts and Recommendations

in Phylogenetics, Phylogenomics, and Systematics

Jonathan Filée
Marie Merle
Héloïse Bastide
Florence Mougel
Jean-Michel Bérenger
Elaine Folly-Ramos
Carlos Eduardo Almeida
Myriam Harry

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2021.750317

5,998 views
20 citations

Original Research

Published on 05 Jan 2022

Whence Came These Plants Most Foul? Phylogenomics and Biogeography of Lowiaceae (Zingiberales)

in Phylogenetics, Phylogenomics, and Systematics

Matti A. Niissalo
Elliot M. Gardner
Gillian S. Khew
Otakar Šída
Axel Dalberg Poulsen
Jana Leong-Škorničková

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2021.794977

6,245 views
4 citations

Original Research

Published on 28 Dec 2021

Novel Expansion of Matrix Metalloproteases in the Laboratory Axolotl (Ambystoma mexicanum) and Other Salamander Species

in Phylogenetics, Phylogenomics, and Systematics

Nour Al Haj Baddar
Nataliya Timoshevskaya
Jeramiah J. Smith
Houfu Guo
S. Randal Voss

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2021.786263

4,388 views

Original Research

Published on 08 Dec 2021

Resurrection of the Family Grateloupiaceae Emend. (Halymeniales, Rhodophyta) Based on a Multigene Phylogeny and Comparative Reproductive Morphology

in Phylogenetics, Phylogenomics, and Systematics

Su Yeon Kim
Hyung Woo Lee
Eun Chan Yang
Sung Min Boo
Juan Lopez-Bautista
Suzanne Fredericq
Roberta D’Archino
Hwan Su Yoon
Myung Sook Kim

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2021.775627

3,502 views
9 citations

Original Research

Published on 08 Dec 2021

Chloroplast Genome Traits Correlate With Organismal Complexity and Ecological Traits in Chlorophyta

in Phylogenetics, Phylogenomics, and Systematics

Jiao Fang
Yangliang Chen
Guoxiang Liu
Heroen Verbruggen
Huan Zhu

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2021.791166

4,119 views
7 citations

Editorial

Published on 03 Dec 2021

Editorial: Assessing Biodiversity in the Phylogenomic Era

in Phylogenetics, Phylogenomics, and Systematics

Michael G. Campana
Melissa T. R. Hawkins
Susana Caballero

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2021.803188

2,416 views
2 citations

Data Report

Published on 30 Nov 2021

Gene Arrangement and Adaptive Evolution in the Mitochondrial Genomes of Terrestrial Sesarmid Crabs Geosesarma faustum and Geosesarma penangensis

in Phylogenetics, Phylogenomics, and Systematics

Nyok-Sean Lau
Ka-Kei Sam
Amirrudin B. Ahmad
Khadijah-Ahmad Siti
Abdul Wahab Ahmad Zafir
Alexander Chong Shu-Chien

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2021.778570

3,059 views
5 citations

Original Research

Published on 15 Oct 2021

Fine-Scale Spatial Structure of Soil Microbial Communities in Burrows of a Keystone Rodent Following Mass Mortality

in Phylogenetics, Phylogenomics, and Systematics

Chadwick Kaufmann
Loren Cassin-Sackett

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2021.758348

3,303 views
6 citations

Original Research

Published on 06 Oct 2021

Chemosensory Gene Expression for Two Closely Relative Species Rhodnius robustus and R. prolixus (Hemiptera, Reduviidade, Triatominae) Vectors of Chagas Disease

in Phylogenetics, Phylogenomics, and Systematics

Axelle Marchant
Florence Mougel
Emmanuelle Jacquin-Joly
Carlos E. Almeida
Denis Blanchet
Jean-Michel Bérenger
João A. da Rosa
Myriam Harry

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2021.725504

4,036 views
9 citations

Original Research

Published on 14 Sep 2021

Helicobacter cyclurae sp. Nov., Isolated From Endangered Blue Iguanas (Cyclura lewisi)

in Phylogenetics, Phylogenomics, and Systematics

Nathan Chan
Zeli Shen
Anthony Mannion
Susanna Kurnick
Ioana S. Popescu
Frederic J. Burton
Paul P. Calle
James G. Fox

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2021.676682

2,656 views
4 citations

Original Research

Published on 30 Aug 2021

Viral Sequences Recovered From Puma Tooth DNA Reconstruct Statewide Viral Phylogenies

in Phylogenetics, Phylogenomics, and Systematics

Roderick B. Gagne
Simona Kraberger
Rebekah McMinn
Daryl R. Trumbo
Charles R. Anderson
Ken A. Logan
Mathew W. Alldredge
Karen Griffin
Sue Vandewoude

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2021.734462

2,349 views
1 citation

Original Research

Published on 23 Aug 2021

Rapid Identification of Common Poisonous Plants in China Using DNA Barcodes

in Phylogenetics, Phylogenomics, and Systematics

Jie Wang
Jinquan Zhao
Weisen Yu
Shuangyu Wang
Shuhua Bu
Xuexiang Shi
Xiuyun Zhang

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2021.698418

3,981 views
3 citations

Original Research

Published on 26 Jul 2021

Phylogenomic Assessment of Biodiversity Using a Reference-Based Taxonomy: An Example With Horned Lizards (Phrynosoma)

in Phylogenetics, Phylogenomics, and Systematics

Adam D. Leaché
Hayden R. Davis
Sonal Singhal
Matthew K. Fujita
Megan E. Lahti
Kelly R. Zamudio

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2021.678110

6,650 views
26 citations

Original Research

Published on 26 Jul 2021

The Evidential Statistics of Genetic Assembly: Bootstrapping a Reference Sequence

in Phylogenetics, Phylogenomics, and Systematics

Yukihiko Toquenaga
Takuya Gagné

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2021.614374

2,485 views
1 citation

Data Report

Published on 22 Jul 2021

Ten Complete Mitochondrial Genomes of Gymnocharacini (Stethaprioninae, Characiformes). Insights Into Evolutionary Relationships and a Repetitive Element in the Control Region (D-loop)

in Phylogenetics, Phylogenomics, and Systematics

Rubens Pasa
Fabiano Bezerra Menegídio
Igor Henrique Rodrigues-Oliveira
Iuri Batista da Silva
Matheus Lewi Cruz Bonaccorsi de Campos
Dinaíza Abadia Rocha-Reis
John Seymour Heslop-Harrison
Trude Schwarzacher
Karine Frehner Kavalco

Frontiers in Ecology and Evolution

doi 10.3389/fevo.2021.650783

3,548 views
12 citations

178 articles

articles

Secondary DNA Barcodes (CAM, GAPDH, GS, and RpB2) to Characterize Species Complexes and Strengthen the Powdery Mildew Phylogeny

Regulating Strategies of Transcription and Alternative Splicing for Cold Tolerance Harpadon nehereus Fish

Poor hDNA-Derived NGS Data May Provide Sufficient Phylogenetic Information of Potentially Extinct Taxa

Lack of Statistical Rigor in DNA Barcoding Likely Invalidates the Presence of a True Species' Barcode Gap

How to Accurately Delineate Morphologically Conserved Taxa and Diagnose Their Phenotypic Disparities: Species Delimitation in Cryptic Rhinolophidae (Chiroptera)

Editorial: Biology, Systematics, Taxonomy, and Evolution of Insect Vectors

Phylogenetic Reconstruction of the Ancestral Chromosome Number of the Genera Anochetus Mayr, 1861 and Odontomachus Latreille, 1804 (Hymenoptera: Formicidae: Ponerinae)

Genome-Wide Identification and Comparative Analysis of WRKY Transcription Factors Related to Momilactone Biosynthesis in Calohypnum plumiforme

Phylogenomic Analysis of the Phylum Nematoda: Conflicts and Congruences With Morphology, 18S rRNA, and Mitogenomes

Phylogenomics for Chagas Disease Vectors of the Rhodnius Genus (Hemiptera, Triatominae): What We Learn From Mito-Nuclear Conflicts and Recommendations

Whence Came These Plants Most Foul? Phylogenomics and Biogeography of Lowiaceae (Zingiberales)

Novel Expansion of Matrix Metalloproteases in the Laboratory Axolotl (Ambystoma mexicanum) and Other Salamander Species

Resurrection of the Family Grateloupiaceae Emend. (Halymeniales, Rhodophyta) Based on a Multigene Phylogeny and Comparative Reproductive Morphology

Chloroplast Genome Traits Correlate With Organismal Complexity and Ecological Traits in Chlorophyta

Editorial: Assessing Biodiversity in the Phylogenomic Era

Gene Arrangement and Adaptive Evolution in the Mitochondrial Genomes of Terrestrial Sesarmid Crabs Geosesarma faustum and Geosesarma penangensis

Fine-Scale Spatial Structure of Soil Microbial Communities in Burrows of a Keystone Rodent Following Mass Mortality

Chemosensory Gene Expression for Two Closely Relative Species Rhodnius robustus and R. prolixus (Hemiptera, Reduviidade, Triatominae) Vectors of Chagas Disease

Helicobacter cyclurae sp. Nov., Isolated From Endangered Blue Iguanas (Cyclura lewisi)

Viral Sequences Recovered From Puma Tooth DNA Reconstruct Statewide Viral Phylogenies

Rapid Identification of Common Poisonous Plants in China Using DNA Barcodes

Phylogenomic Assessment of Biodiversity Using a Reference-Based Taxonomy: An Example With Horned Lizards (Phrynosoma)

The Evidential Statistics of Genetic Assembly: Bootstrapping a Reference Sequence

Ten Complete Mitochondrial Genomes of Gymnocharacini (Stethaprioninae, Characiformes). Insights Into Evolutionary Relationships and a Repetitive Element in the Control Region (D-loop)