Frontiers in Epigenetics and Epigenomics

Original Research

Published on 02 Oct 2024

MicroRNAs provide negative feedback and stability in gene regulatory network models of cell-state transitions

in Chromatin Epigenomics

Milad Razavi-Mohseni
Michael A. Beer

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2024.1473789

2,104 views
2 citations

Hypothesis and Theory

Published on 16 Sep 2024

Regulation of developmentally controlled enhancer activity by extrinsic signals in normal and malignant cells: AP-1 at the centre

in Chromatin Epigenomics

Alexander Maytum
Nadine Obier
Pierre Cauchy
Constanze Bonifer

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2024.1465958

3,338 views
2 citations

Review

Published on 11 Sep 2024

Interplay between epigenetics and metabolism controls cancer stem cell plasticity

in Epigenetics and Metabolism

Jee-Eun Choi
Inwha Baek

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2024.1424163

2,525 views
2 citations

Brief Research Report

Published on 04 Sep 2024

Quantification of tumour-infiltrating immune cells through deconvolution of DNA methylation data in Ewing sarcomas

in Epigenomic Tools

Sara Patrizi
Silvia Vallese
Lucia Pedace
Claudia Nardini
Alessandra Stracuzzi
Sabina Barresi
Isabella Giovannoni
Luana Abballe
Celeste Antonacci
Ida Russo

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2024.1427399

1,669 views
1 citation

Perspective

Published on 30 Aug 2024

Transgenerational epigenetic inheritance: a critical perspective

in Chromatin Epigenomics

Adrian Bird

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2024.1434253

14,968 views
9 citations

Review

Published on 22 Aug 2024

Histone H2A variants play a key role at DNA double-strand breaks during repair pathway choice

in Chromatin Epigenomics

Emile Clerf
Maxime Galloy
Amélie Fradet-Turcotte
Jacques Côté

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2024.1445765

3,369 views
2 citations

Hypothesis and Theory

Published on 01 Aug 2024

A hypothetical model: Chromatin remodelers couple with acetyltransferases to trigger the elongation of RNA polymerase II (pol II)

in Chromatin Epigenomics

Gongyi Zhang

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2024.1439973

2,196 views
3 citations

Mini Review

Published on 31 Jul 2024

Subcellular one carbon metabolism in cancer, aging and epigenetics

in Chromatin Epigenomics

Tiziano Bernasocchi
Raul Mostoslavsky

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2024.1451971

6,581 views
13 citations

Original Research

Published on 25 Jul 2024

Benchmark of the Oxford Nanopore, EM-seq, and HumanMethylationEPIC BeadChip for the detection of the 5mC sites in cancer and normal samples

in Epigenomic Tools

Kseniia A. Deinichenko
Valentina G. Vynogradskaya
Pavel A. Grebnev
Valeriya M. Mikova
Dmitriy O. Bobylev
Abusaid M. Shaymardanov
Alexey A. Ivashechkin
Marina V. Erokhina
Alexandra I. Akinshina
Anna V. Semyanihina

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2024.1362926

5,392 views
4 citations

Review

Published on 19 Jul 2024

Advancements in the clinical application of gene methylation for early cancer detection

in Chromatin Epigenomics

Xin Xu
Yanru Guo
Mulin Liu
Yunxiang Hu
Shijun Li

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2024.1430294

5,228 views
7 citations

Original Research

Published on 15 Jul 2024

Transcription factor network dynamics during the commitment to oncogene-induced senescence

in Chromatin Epigenomics

Themistoklis Vasilopoulos
Ricardo Iván Martínez-Zamudio

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2024.1423454

2,724 views
4 citations

Mini Review

Published on 16 May 2024

PIF transcription factors-versatile plant epigenome landscapers

in Chromatin Epigenomics

Moonia Ammari
Kashif Maseh
Mark Zander

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2024.1404958

2,930 views
4 citations

Original Research

Published on 07 May 2024

Enhanced glucose metabolism in Tet-deficient mouse embryonic stem cells

in Epigenetics and Metabolism

Yuhan Yang
Maryn Cavalier
Ashley Suris
Kevin Chen
Claire An
Jingyuan Fan
Logan Rivera
Shaohai Fang
Lei Guo
Yubin Zhou

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2024.1245823

1,964 views
1 citation

Mini Review

Published on 26 Apr 2024

Micronutrient regulation of the DNA methylome

in Epigenetics and Metabolism

Tiffany Leesang
Peter Lyon
Joey Pinzone
Luisa Cimmino

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2024.1409355

3,028 views

Original Research

Published on 17 Jan 2024

Two pioneers of epigenetics: their different paths to chromatin research and DNA methylation, and general reflections on epigenetics

in Chromatin Epigenomics

Ute Deichmann

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2023.1334556

3,674 views
4 citations

Review

Published on 04 Jan 2024

SWI/SNF chromatin remodelers in prostate cancer progression

in Chromatin Epigenomics

Sandra C. Ordonez-Rubiano
Brayden P. Strohmier
Surbhi Sood
Emily C. Dykhuizen

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2023.1337345

4,147 views
4 citations

Original Research

Published on 23 Nov 2023

Enhancing sensitivity and versatility of Tn5-based single cell omics

in Chromatin Epigenomics

Isabelle Seufert
Pooja Sant
Katharina Bauer
Afzal P. Syed
Karsten Rippe
Jan-Philipp Mallm

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2023.1245879

4,997 views
7 citations

Mini Review

Published on 21 Aug 2023

Beyond genetics: can micro and nanoplastics induce epigenetic and gene-expression modifications?

in Plant Epigenetics

Anna M. G. Poma
Patrizia Morciano
Massimo Aloisi

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2023.1241583

11,426 views
28 citations

Review

Published on 04 Aug 2023

Protein arginine methylation in transcription and epigenetic regulation

in Chromatin Epigenomics

Hoang Quoc Hai Pham
Xiaoqun Tao
Yanzhong Yang

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2023.1245832

6,132 views
5 citations

Original Research

Published on 31 Jul 2023

Generation of site-specific ubiquitinated histones through chemical ligation to probe the specificities of histone deubiquitinases

in Chromatin Epigenomics

Nouf Omar AlAfaleq
Yun-Seok Choi
Boyko S. Atanassov
Robert E. Cohen
Tingting Yao

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2023.1238154

2,307 views

Mini Review

Published on 23 May 2023

Triggers and mediators of epigenetic remodeling in plants

in Plant Epigenetics

Luca Comai

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2023.1188733

1,821 views
1 citation

Original Research

Published on 05 May 2023

Targeted RNAi screen identifies transcriptional mechanisms that prevent premature degeneration of adult photoreceptors

in Chromatin Epigenomics

Spencer E. Escobedo
Sarah E. McGovern
Juan P. Jauregui-Lozano
Sarah C. Stanhope
Paul Anik
Kratika Singhal
Ryan DeBernardis
Vikki M. Weake

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2023.1187980

3,017 views
2 citations

Perspective

Published on 05 May 2023

Grand challenge in chromatin epigenomics: everything, everywhere, all at once

in Chromatin Epigenomics

Sharon Y. R. Dent

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2023.1195690

2,904 views
2 citations

Perspective

Published on 20 Mar 2023

The epigenetic landscape: An evolving concept

in Chromatin Epigenomics

Steven Henikoff

Frontiers in Epigenetics and Epigenomics

doi 10.3389/freae.2023.1176449

17,426 views
12 citations

48 articles

articles

MicroRNAs provide negative feedback and stability in gene regulatory network models of cell-state transitions

Regulation of developmentally controlled enhancer activity by extrinsic signals in normal and malignant cells: AP-1 at the centre

Interplay between epigenetics and metabolism controls cancer stem cell plasticity

Quantification of tumour-infiltrating immune cells through deconvolution of DNA methylation data in Ewing sarcomas

Transgenerational epigenetic inheritance: a critical perspective

Histone H2A variants play a key role at DNA double-strand breaks during repair pathway choice

A hypothetical model: Chromatin remodelers couple with acetyltransferases to trigger the elongation of RNA polymerase II (pol II)

Subcellular one carbon metabolism in cancer, aging and epigenetics

Benchmark of the Oxford Nanopore, EM-seq, and HumanMethylationEPIC BeadChip for the detection of the 5mC sites in cancer and normal samples

Advancements in the clinical application of gene methylation for early cancer detection

Transcription factor network dynamics during the commitment to oncogene-induced senescence

PIF transcription factors-versatile plant epigenome landscapers

Enhanced glucose metabolism in Tet-deficient mouse embryonic stem cells

Micronutrient regulation of the DNA methylome

Two pioneers of epigenetics: their different paths to chromatin research and DNA methylation, and general reflections on epigenetics

SWI/SNF chromatin remodelers in prostate cancer progression

Enhancing sensitivity and versatility of Tn5-based single cell omics

Beyond genetics: can micro and nanoplastics induce epigenetic and gene-expression modifications?

Protein arginine methylation in transcription and epigenetic regulation

Generation of site-specific ubiquitinated histones through chemical ligation to probe the specificities of histone deubiquitinases

Triggers and mediators of epigenetic remodeling in plants

Targeted RNAi screen identifies transcriptional mechanisms that prevent premature degeneration of adult photoreceptors

Grand challenge in chromatin epigenomics: everything, everywhere, all at once

The epigenetic landscape: An evolving concept