Frontiers in Genetics

Original Research

Published on 03 Oct 2025

HFTC: a hierarchical fungal taxonomic classification model for ITS sequences using low-dimensional embedding features

in Computational Genomics

Jiawei Wang
Shaojie Qiao
Dongsheng Xiang
Yangcheng Liao
Chao Wang

Frontiers in Genetics

doi 10.3389/fgene.2025.1650244

2,490 views

Original Research

Published on 03 Oct 2025

Sex-specific gene expression and weighted co-expression network analysis suggest distinct sex-specific molecular signatures in acutely suicidal MDD-patients without somatic comorbidities

in Behavioral and Psychiatric Genetics

Michael Fritz
Karlheinz Holzmann
Silvia Castany
Heidrun Haas
Christian Montag
David Engblom
Judith Streb
Manuela Dudeck

Frontiers in Genetics

doi 10.3389/fgene.2025.1653768

4,493 views
1 citation

Review

Published on 02 Oct 2025

Recent advances of DNA methylation in osteonecrosis of the femoral head

in Epigenomics and Epigenetics

Tingting Zhou
Huan Liu
Huayan Li
Yan Zhang
Xiaoming Li

Frontiers in Genetics

doi 10.3389/fgene.2025.1526852

4,169 views

Original Research

Published on 02 Oct 2025

Time-series transcriptomics and alternative splicing analysis of embryonic development of the asian honeybee (Apis cerana)

in Livestock Genomics

Xiang Ding
Zukai Liu
Linsen Ou
Zhihui Wang
Qian Xu
Runlang Su

Frontiers in Genetics

doi 10.3389/fgene.2025.1665548

2,852 views

Original Research

Published on 02 Oct 2025

Analyses of haplotypes of TLR2 and TLR3 genes for COVID-19 prognosis in a cohort of professionals who worked in the first pandemic wave in Belém-PA, Brazil

in Computational Genomics

Marcos Jessé Abrahão Silva
Luiza Raquel Tapajós Figueira
Daniele Melo Sardinha
Eliete Costa da Cruz
Natasha Cristina Oliveira Andrade
Sebastião Kauã De Sousa Bispo
Thiago Augusto Ferreira Dos Anjos
Everaldina Cordeiro Dos Santos
Ana Judith Pires Garcia
Luana Nepomuceno Gondim Costa Lima

Frontiers in Genetics

doi 10.3389/fgene.2025.1659269

1,687 views
1 citation

Mini Review

Published on 01 Oct 2025

Recent progress on DNA methylation in psoriasis

in RNA

Zhaoping Lin
Xiaoting Wu
Xuqin Hong
Dongying Luo
Hui Li
Fei Ma
Cong Huang
Bo Yu
Jing Gao
Changbing Shen

Frontiers in Genetics

doi 10.3389/fgene.2025.1681666

4,082 views

Original Research

Published on 01 Oct 2025

Comparative analysis of miRNA expression in Yili horses pre- and post-5000-m race

in Livestock Genomics

Shikun Ma
Wanlu Ren
Zexu Li
Luling Li
Ran Wang
Yi Su
Qiuping Huang
Shan Dehaxi
Jianwen Wang

Frontiers in Genetics

doi 10.3389/fgene.2025.1676558

3,104 views
2 citations

Original Research

Published on 01 Oct 2025

Identification and validation of calcium signaling pathway-related biomarkers in T1 and T2 lymph node metastatic gastric cancer

in Cancer Genetics and Oncogenomics

Mingzhi Cai
Xinyang Nie
Fenglin Cai
Xiuding Yang
Weilin Sun
Rupeng Zhang
Han Liang
Yonglin Yang
Li Zhang

Frontiers in Genetics

doi 10.3389/fgene.2025.1653700

2,686 views
1 citation

Original Research

Published on 01 Oct 2025

Using buccal methylomic data to create explainable aging clocks as well as classifiers and regressors for lifestyle and demographic factors

in Epigenomics and Epigenetics

Maxim N. Shokhirev
Adiv A. Johnson

Frontiers in Genetics

doi 10.3389/fgene.2025.1637186

4,477 views

Data Report

Published on 01 Oct 2025

Annotated genome of Aedes japonicus japonicus using a hybrid-assembly approach

in Computational Genomics

Friederike Reuss
Tilman Schell
Haruhiko Isawa
Shinji Kasai
Sven Klimpel
Ruth Müller
Markus Pfenninger
Judith Kochmann

Frontiers in Genetics

doi 10.3389/fgene.2025.1667262

2,690 views

Original Research

Published on 01 Oct 2025

Comprehensive genetic diversity revealed in the pre-breeding RILs (O. sativa × O. rufipogon) with enhanced yield and pigmented grain quality

in Genomics of Plants and the Phytoecosystem

Subhas Chandra Roy
Pankaj Shil

Frontiers in Genetics

doi 10.3389/fgene.2025.1659937

3,087 views
1 citation

Editorial

Published on 30 Sep 2025

Editorial: Genetic dissection and improvement of crop quality and stress adaptation

in Genetics and Genomics of Plants and Plant-Associated Organisms

Liwei Zheng
Hangkai Zhang
Songwen Zhang
Yingpeng Hua
Lihu Wang

Frontiers in Genetics

doi 10.3389/fgene.2025.1694599

2,890 views

Original Research

Published on 30 Sep 2025

Prenatal diagnosis and molecular characterization of PKHD1 variants in two Chinese fetuses with Caroli disease/syndrome

in Genetics of Common and Rare Diseases

Hui Huang
Sheng Zhao
Dan Wang
Shengbao Pan
Fang Liu
Peiwen Chen
Xinlin Chen

Frontiers in Genetics

doi 10.3389/fgene.2025.1651306

3,527 views

Original Research

Published on 29 Sep 2025

Comparative genome-wide analysis of Ovis aries in Saudi Arabia highlighting inbreeding and genetic isolation of the Najdi sheep breed

in Livestock Genomics

Abdulrahman K. Aldawish
Mohanad A. Ibrahim
Faisal M. Alsubaie
Quaiser Saquib
Mohammed Fahad Albeshr

Frontiers in Genetics

doi 10.3389/fgene.2025.1646127

4,413 views

Original Research

Published on 29 Sep 2025

Understanding stakeholders’ experience with sickle cell disease by social media listening across Europe

in ELSI in Science and Genetics

Daniel Brás
Celeste Bento
Sathyaraj Asaithambi
Jyoti Chauhan
Ines Moital

Frontiers in Genetics

doi 10.3389/fgene.2025.1629510

4,611 views

Original Research

Published on 29 Sep 2025

Immune-molecular nexus in reproductive disorders: mechanisms linking POI and RSA

in Computational Genomics

Chen Chen
Xinyue Zhang
Wenxin Li
Yueqin Liu
Dan Zhao
Subo Zhang
Xiaolan Zhu

Frontiers in Genetics

doi 10.3389/fgene.2025.1652519

2,974 views

Original Research

Published on 29 Sep 2025

LncRNA and mRNA expression characteristic and bioinformatic analysis in anemic diabetic foot ulcers

in RNA

Jiayu Lin
Jingying Wang
Bo Liang

Frontiers in Genetics

doi 10.3389/fgene.2025.1603315

1,874 views
1 citation

Original Research

Published on 26 Sep 2025

ZmEXPB7, a β-expansin gene, contributes to drought tolerance in Arabidopsis

in Genomics of Plants and the Phytoecosystem

Jing Xiong
Xianqiu Wang
Xueling Ye
Changying Liu
Jialiang Han

Frontiers in Genetics

doi 10.3389/fgene.2025.1688658

3,642 views
1 citation

Methods

Published on 26 Sep 2025

CNAdjust: enhancing CNA calling accuracy through systematic baseline adjustment

in Cancer Genetics and Oncogenomics

Hangjia Zhao
Michael Baudis

Frontiers in Genetics

doi 10.3389/fgene.2025.1674138

2,741 views

Methods

Published on 26 Sep 2025

A partially automated method for DNA extraction from marmoset hair follicles to avoid blood chimerism

in Genomic Assay Technology

Alexandra M. Stendahl
Qiangge Zhang
Ana C. Lima
Curtis Mello
James Nemesh
Sam Peterson
Jenna Castro
Fritzie T. Celino-Brady
Karina Ray
Xian Gao

Frontiers in Genetics

doi 10.3389/fgene.2025.1608504

4,520 views

Original Research

Published on 26 Sep 2025

Developing prognostic models for cholesterol-related genes linked with immune infiltration in prostate cancer

in Cancer Genetics and Oncogenomics

Jie Wu

Frontiers in Genetics

doi 10.3389/fgene.2025.1604113

2,781 views

Original Research

Published on 25 Sep 2025

Association between LRRK2 gene polymorphisms and Parkinson’s disease progression in a Chinese Han population

in Genetics of Common and Rare Diseases

Zhaoting Zhang
Lei Geng
Jiuxin Gao
Ruifang She
Zhonglin Ge
Jianhua Liu
Qianqian He
Bing Fu
Weiguo Liu

Frontiers in Genetics

doi 10.3389/fgene.2025.1662348

2,580 views

Original Research

Published on 25 Sep 2025

Functional analysis of MEIS2 splice site variant c.438 + 1G>T in a congenital heart patient

in Genetics of Common and Rare Diseases

Chenyu Xu
Junjuan Li
Xinghui Ma
Wenqi Li
Bo Jiang
Hua Bai
Fuhong Wu
Chunlian Liu
Jiwei Gu

Frontiers in Genetics

doi 10.3389/fgene.2025.1629159

2,058 views

Original Research

Published on 25 Sep 2025

Cross-modal predictive modeling of multi-omic data in 3D airway organ tissue equivalents during viral infection

in Computational Genomics

Mostafa Rezapour
Patrick M. McNutt
David A. Ornelles
Stephen J. Walker
Sean V. Murphy
Anthony Atala
Metin Nafi Gurcan

Frontiers in Genetics

doi 10.3389/fgene.2025.1658577

3,118 views
1 citation

16,587 articles

articles

HFTC: a hierarchical fungal taxonomic classification model for ITS sequences using low-dimensional embedding features

Sex-specific gene expression and weighted co-expression network analysis suggest distinct sex-specific molecular signatures in acutely suicidal MDD-patients without somatic comorbidities

Recent advances of DNA methylation in osteonecrosis of the femoral head

Time-series transcriptomics and alternative splicing analysis of embryonic development of the asian honeybee (Apis cerana)

Analyses of haplotypes of TLR2 and TLR3 genes for COVID-19 prognosis in a cohort of professionals who worked in the first pandemic wave in Belém-PA, Brazil

Recent progress on DNA methylation in psoriasis

Comparative analysis of miRNA expression in Yili horses pre- and post-5000-m race

Identification and validation of calcium signaling pathway-related biomarkers in T1 and T2 lymph node metastatic gastric cancer

Using buccal methylomic data to create explainable aging clocks as well as classifiers and regressors for lifestyle and demographic factors

Annotated genome of Aedes japonicus japonicus using a hybrid-assembly approach

Comprehensive genetic diversity revealed in the pre-breeding RILs (O. sativa × O. rufipogon) with enhanced yield and pigmented grain quality

Editorial: Genetic dissection and improvement of crop quality and stress adaptation

Prenatal diagnosis and molecular characterization of PKHD1 variants in two Chinese fetuses with Caroli disease/syndrome

Comparative genome-wide analysis of Ovis aries in Saudi Arabia highlighting inbreeding and genetic isolation of the Najdi sheep breed

Understanding stakeholders’ experience with sickle cell disease by social media listening across Europe

Immune-molecular nexus in reproductive disorders: mechanisms linking POI and RSA

LncRNA and mRNA expression characteristic and bioinformatic analysis in anemic diabetic foot ulcers

ZmEXPB7, a β-expansin gene, contributes to drought tolerance in Arabidopsis

CNAdjust: enhancing CNA calling accuracy through systematic baseline adjustment

A partially automated method for DNA extraction from marmoset hair follicles to avoid blood chimerism

Developing prognostic models for cholesterol-related genes linked with immune infiltration in prostate cancer

Association between LRRK2 gene polymorphisms and Parkinson’s disease progression in a Chinese Han population

Functional analysis of MEIS2 splice site variant c.438 + 1G>T in a congenital heart patient

Cross-modal predictive modeling of multi-omic data in 3D airway organ tissue equivalents during viral infection