Frontiers in Genetics | Computational Genomics

Systematic Review

Published on 06 Jun 2024

Bibliometric analysis of kinship analysis from 1960 to 2023: global trends and development

in Computational Genomics

Yanchen Liu
Chaoran Sun
Haoyuan Si
Zixuan Peng
Liya Gu
Xiangnan Guo
Feng Song

Frontiers in Genetics

doi 10.3389/fgene.2024.1401898

3,919 views
1 citation

Original Research

Published on 05 Jun 2024

LGC-DBP: the method of DNA-binding protein identification based on PSSM and deep learning

in Computational Genomics

Yiqi Zhu
Ailun Sun

Frontiers in Genetics

doi 10.3389/fgene.2024.1411847

2,256 views
2 citations

Original Research

Published on 04 Jun 2024

Identification of apoptosis-immune-related gene signature and construction of diagnostic model for sepsis based on single-cell sequencing and bulk transcriptome analysis

in Computational Genomics

Zhongyi Sun
Yanan Hu
Jiachen Qu
Qiuyue Zhao
Han Gao
Zhiyong Peng

Frontiers in Genetics

doi 10.3389/fgene.2024.1389630

5,705 views
5 citations

Original Research

Published on 30 May 2024

Prediction of miRNAs and diseases association based on sparse autoencoder and MLP

in Computational Genomics

Si-Lin Sun
Bing-Wei Zhou
Sheng-Zheng Liu
Yu-Han Xiu
Anas Bilal
Hai-Xia Long

Frontiers in Genetics

doi 10.3389/fgene.2024.1369811

2,339 views
4 citations

Review

Published on 30 May 2024

A war on many fronts: cross disciplinary approaches for novel cancer treatment strategies

in Computational Genomics

Adriana Del Pino Herrera
Meghan C. Ferrall-Fairbanks

Frontiers in Genetics

doi 10.3389/fgene.2024.1383676

2,758 views
2 citations

Original Research

Published on 28 May 2024

Identification of biomarkers associated with ferroptosis in diabetic retinopathy based on WGCNA and machine learning

in Computational Genomics

Hui-qing Guo
Rong Xue
Guangming Wan

Frontiers in Genetics

doi 10.3389/fgene.2024.1376771

3,181 views
6 citations

Methods

Published on 23 May 2024

Specific feature recognition on group specific networks (SFR-GSN): a biomarker identification model for cancer stages

in Computational Genomics

Bolin Chen
Yuxin Wang
Jinlei Zhang
Yourui Han
Hamza Benhammouda
Jun Bian
Ruiming Kang
Xuequn Shang

Frontiers in Genetics

doi 10.3389/fgene.2024.1407072

1,792 views
3 citations

Original Research

Published on 17 May 2024

Designing a multi-epitope vaccine against Shigella dysenteriae using immuno-informatics approach

in Computational Genomics

Hurria Qureshi
Amina Basheer
Muhammad Faheem
Muhammad Waqar Arshad
Sunil Kumar Rai
Syed Babar Jamal

Frontiers in Genetics

doi 10.3389/fgene.2024.1361610

4,195 views
11 citations

Original Research

Published on 10 May 2024

LcDel: deletion variation detection based on clustering and long reads

in Computational Genomics

Yanan Yu
Runtian Gao
Junwei Luo

Frontiers in Genetics

doi 10.3389/fgene.2024.1404415

2,100 views

Original Research

Published on 10 May 2024

BJLD-CMI: a predictive circRNA-miRNA interactions model combining multi-angle feature information

in Computational Genomics

Yi-Xin Zhao
Chang-Qing Yu
Li-Ping Li
Deng-Wu Wang
Hui-Fan Song
Yu Wei

Frontiers in Genetics

doi 10.3389/fgene.2024.1399810

2,291 views
5 citations

Original Research

Published on 09 May 2024

Bipartite networks represent causality better than simple networks: evidence, algorithms, and applications

in Computational Genomics

Bingran Shen
Gloria M. Coruzzi
Dennis Shasha

Frontiers in Genetics

doi 10.3389/fgene.2024.1371607

3,336 views
1 citation

Original Research

Published on 09 May 2024

Transient receptor potential channels’ genes forecast cervical cancer outcomes and illuminate its impact on tumor cells

in Computational Genomics

Shan Jiang
Xuefen Lin
Qiaoling Wu
Jianfeng Zheng
Zhaolei Cui
Xintong Cai
Yanhong Li
Chaoqiang Zheng
Yang Sun

Frontiers in Genetics

doi 10.3389/fgene.2024.1391842

2,508 views
5 citations

Original Research

Published on 06 May 2024

CD-Loop: a chromatin loop detection method based on the diffusion model

in Computational Genomics

Jiquan Shen
Yang Wang
Junwei Luo

Frontiers in Genetics

doi 10.3389/fgene.2024.1393406

3,136 views
6 citations

Original Research

Published on 06 May 2024

MIFAM-DTI: a drug-target interactions predicting model based on multi-source information fusion and attention mechanism

in Computational Genomics

Jianwei Li
Lianwei Sun
Lingbo Liu
Ziyu Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1381997

3,927 views
7 citations

Original Research

Published on 30 Apr 2024

In search of the ratio of miRNA expression as robust biomarkers for constructing stable diagnostic models among multi-center data

in Computational Genomics

Cuidie Ma
Yonghao Zhang
Rui Ding
Han Chen
Xudong Wu
Lida Xu
Changyuan Yu

Frontiers in Genetics

doi 10.3389/fgene.2024.1381917

2,631 views
6 citations

Original Research

Published on 26 Apr 2024

Predict lncRNA-drug associations based on graph neural network

in Computational Genomics

Peng Xu
Chuchu Li
Jiaqi Yuan
Zhenshen Bao
Wenbin Liu

Frontiers in Genetics

doi 10.3389/fgene.2024.1388015

5,089 views
33 citations

Original Research

Published on 25 Apr 2024

Bayesian hidden mark interaction model for detecting spatially variable genes in imaging-based spatially resolved transcriptomics data

in Computational Genomics

Jie Yang
Xi Jiang
Kevin Wang Jin
Sunyoung Shin
Qiwei Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1356709

2,679 views
4 citations

Original Research

Published on 24 Apr 2024

A multi-organization epigenetic age prediction based on a channel attention perceptron networks

in Computational Genomics

Jian Zhao
Haixia Li
Jing Qu
Xizeng Zong
Yuchen Liu
Zhejun Kuang
Han Wang

Frontiers in Genetics

doi 10.3389/fgene.2024.1393856

2,512 views
3 citations

Technology and Code

Published on 24 Apr 2024

SVhawkeye: an ultra-fast software for user-friendly visualization of targeted structural fragments from BAM files

in Computational Genomics

Yuhui Xiao
Tao Yu
Fan Liang
Tingping Hou

Frontiers in Genetics

doi 10.3389/fgene.2024.1352443

4,318 views
3 citations

Original Research

Published on 18 Apr 2024

Single-cell and bulk RNAseq unveils the immune infiltration landscape and targeted therapeutic biomarkers of psoriasis

in Computational Genomics

Wenhui Deng
Yijiao Yan
Chengzhi Shi
Daoshun Sui

Frontiers in Genetics

doi 10.3389/fgene.2024.1365273

6,428 views
3 citations

Original Research

Published on 18 Apr 2024

Identification of common genes and pathways between type 2 diabetes and COVID-19

in Computational Genomics

Ya Wang
Kai Li
Shuangyang Mo
Peishan Yao
Jiaxing Zeng
Shunyu Lu
Shanyu Qin

Frontiers in Genetics

doi 10.3389/fgene.2024.1249501

4,182 views
4 citations

Methods

Published on 16 Apr 2024

OGNNMDA: a computational model for microbe-drug association prediction based on ordered message-passing graph neural networks

in Computational Genomics

Jiabao Zhao
Linai Kuang
An Hu
Qi Zhang
Dinghai Yang
Chunxiang Wang

Frontiers in Genetics

doi 10.3389/fgene.2024.1370013

2,348 views
6 citations

Original Research

Published on 16 Apr 2024

iDNA-OpenPrompt: OpenPrompt learning model for identifying DNA methylation

in Computational Genomics

Xia Yu
Jia Ren
Haixia Long
Rao Zeng
Guoqiang Zhang
Anas Bilal
Yani Cui

Frontiers in Genetics

doi 10.3389/fgene.2024.1377285

2,958 views
24 citations

Original Research

Published on 10 Apr 2024

Critical gene signature and immunological characterization in peripheral vascular atherosclerosis: novel insights from mendelian randomization and transcriptomics

in Computational Genomics

Wei Xie
Shumin Chen
Hanqing Luo
Chuiyu Kong
Dongjin Wang

Frontiers in Genetics

doi 10.3389/fgene.2024.1361445

5,082 views
2 citations

2,653 articles

articles

Bibliometric analysis of kinship analysis from 1960 to 2023: global trends and development

LGC-DBP: the method of DNA-binding protein identification based on PSSM and deep learning

Identification of apoptosis-immune-related gene signature and construction of diagnostic model for sepsis based on single-cell sequencing and bulk transcriptome analysis

Prediction of miRNAs and diseases association based on sparse autoencoder and MLP

A war on many fronts: cross disciplinary approaches for novel cancer treatment strategies

Identification of biomarkers associated with ferroptosis in diabetic retinopathy based on WGCNA and machine learning

Specific feature recognition on group specific networks (SFR-GSN): a biomarker identification model for cancer stages

Designing a multi-epitope vaccine against Shigella dysenteriae using immuno-informatics approach

LcDel: deletion variation detection based on clustering and long reads

BJLD-CMI: a predictive circRNA-miRNA interactions model combining multi-angle feature information

Bipartite networks represent causality better than simple networks: evidence, algorithms, and applications

Transient receptor potential channels’ genes forecast cervical cancer outcomes and illuminate its impact on tumor cells

CD-Loop: a chromatin loop detection method based on the diffusion model

MIFAM-DTI: a drug-target interactions predicting model based on multi-source information fusion and attention mechanism

In search of the ratio of miRNA expression as robust biomarkers for constructing stable diagnostic models among multi-center data

Predict lncRNA-drug associations based on graph neural network

Bayesian hidden mark interaction model for detecting spatially variable genes in imaging-based spatially resolved transcriptomics data

A multi-organization epigenetic age prediction based on a channel attention perceptron networks

SVhawkeye: an ultra-fast software for user-friendly visualization of targeted structural fragments from BAM files

Single-cell and bulk RNAseq unveils the immune infiltration landscape and targeted therapeutic biomarkers of psoriasis

Identification of common genes and pathways between type 2 diabetes and COVID-19

OGNNMDA: a computational model for microbe-drug association prediction based on ordered message-passing graph neural networks

iDNA-OpenPrompt: OpenPrompt learning model for identifying DNA methylation

Critical gene signature and immunological characterization in peripheral vascular atherosclerosis: novel insights from mendelian randomization and transcriptomics