Frontiers in Genetics | Computational Genomics

Original Research

Published on 09 May 2024

Bipartite networks represent causality better than simple networks: evidence, algorithms, and applications

in Computational Genomics

Bingran Shen
Gloria M. Coruzzi
Dennis Shasha

Frontiers in Genetics

doi 10.3389/fgene.2024.1371607

2,306 views
1 citation

Original Research

Published on 09 May 2024

Transient receptor potential channels’ genes forecast cervical cancer outcomes and illuminate its impact on tumor cells

in Computational Genomics

Shan Jiang
Xuefen Lin
Qiaoling Wu
Jianfeng Zheng
Zhaolei Cui
Xintong Cai
Yanhong Li
Chaoqiang Zheng
Yang Sun

Frontiers in Genetics

doi 10.3389/fgene.2024.1391842

1,615 views
1 citation

Original Research

Published on 06 May 2024

CD-Loop: a chromatin loop detection method based on the diffusion model

in Computational Genomics

Jiquan Shen
Yang Wang
Junwei Luo

Frontiers in Genetics

doi 10.3389/fgene.2024.1393406

2,022 views
3 citations

Original Research

Published on 06 May 2024

MIFAM-DTI: a drug-target interactions predicting model based on multi-source information fusion and attention mechanism

in Computational Genomics

Jianwei Li
Lianwei Sun
Lingbo Liu
Ziyu Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1381997

2,604 views
3 citations

Original Research

Published on 30 Apr 2024

In search of the ratio of miRNA expression as robust biomarkers for constructing stable diagnostic models among multi-center data

in Computational Genomics

Cuidie Ma
Yonghao Zhang
Rui Ding
Han Chen
Xudong Wu
Lida Xu
Changyuan Yu

Frontiers in Genetics

doi 10.3389/fgene.2024.1381917

1,883 views
3 citations

Original Research

Published on 26 Apr 2024

Predict lncRNA-drug associations based on graph neural network

in Computational Genomics

Peng Xu
Chuchu Li
Jiaqi Yuan
Zhenshen Bao
Wenbin Liu

Frontiers in Genetics

doi 10.3389/fgene.2024.1388015

3,642 views
30 citations

Original Research

Published on 25 Apr 2024

Bayesian hidden mark interaction model for detecting spatially variable genes in imaging-based spatially resolved transcriptomics data

in Computational Genomics

Jie Yang
Xi Jiang
Kevin Wang Jin
Sunyoung Shin
Qiwei Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1356709

1,694 views
3 citations

Original Research

Published on 24 Apr 2024

A multi-organization epigenetic age prediction based on a channel attention perceptron networks

in Computational Genomics

Jian Zhao
Haixia Li
Jing Qu
Xizeng Zong
Yuchen Liu
Zhejun Kuang
Han Wang

Frontiers in Genetics

doi 10.3389/fgene.2024.1393856

1,691 views
2 citations

Technology and Code

Published on 24 Apr 2024

SVhawkeye: an ultra-fast software for user-friendly visualization of targeted structural fragments from BAM files

in Computational Genomics

Yuhui Xiao
Tao Yu
Fan Liang
Tingping Hou

Frontiers in Genetics

doi 10.3389/fgene.2024.1352443

2,717 views
2 citations

Original Research

Published on 18 Apr 2024

Single-cell and bulk RNAseq unveils the immune infiltration landscape and targeted therapeutic biomarkers of psoriasis

in Computational Genomics

Wenhui Deng
Yijiao Yan
Chengzhi Shi
Daoshun Sui

Frontiers in Genetics

doi 10.3389/fgene.2024.1365273

4,344 views
1 citation

Original Research

Published on 18 Apr 2024

Identification of common genes and pathways between type 2 diabetes and COVID-19

in Computational Genomics

Ya Wang
Kai Li
Shuangyang Mo
Peishan Yao
Jiaxing Zeng
Shunyu Lu
Shanyu Qin

Frontiers in Genetics

doi 10.3389/fgene.2024.1249501

3,143 views
3 citations

Methods

Published on 16 Apr 2024

OGNNMDA: a computational model for microbe-drug association prediction based on ordered message-passing graph neural networks

in Computational Genomics

Jiabao Zhao
Linai Kuang
An Hu
Qi Zhang
Dinghai Yang
Chunxiang Wang

Frontiers in Genetics

doi 10.3389/fgene.2024.1370013

1,519 views
2 citations

Original Research

Published on 16 Apr 2024

iDNA-OpenPrompt: OpenPrompt learning model for identifying DNA methylation

in Computational Genomics

Xia Yu
Jia Ren
Haixia Long
Rao Zeng
Guoqiang Zhang
Anas Bilal
Yani Cui

Frontiers in Genetics

doi 10.3389/fgene.2024.1377285

2,009 views
15 citations

Original Research

Published on 10 Apr 2024

Critical gene signature and immunological characterization in peripheral vascular atherosclerosis: novel insights from mendelian randomization and transcriptomics

in Computational Genomics

Wei Xie
Shumin Chen
Hanqing Luo
Chuiyu Kong
Dongjin Wang

Frontiers in Genetics

doi 10.3389/fgene.2024.1361445

3,573 views
1 citation

Original Research

Published on 08 Apr 2024

Unveiling the hub genes in the SIGLECs family in colon adenocarcinoma with machine learning

in Computational Genomics

Tiantian Li
Ji Yao

Frontiers in Genetics

doi 10.3389/fgene.2024.1375100

1,497 views

Original Research

Published on 05 Apr 2024

TMBcalc: a computational pipeline for identifying pan-cancer Tumor Mutational Burden gene signatures

in Computational Genomics

Grete Francesca Privitera
Salvatore Alaimo
Anna Caruso
Alfredo Ferro
Stefano Forte
Alfredo Pulvirenti

Frontiers in Genetics

doi 10.3389/fgene.2024.1285305

2,744 views
1 citation