Frontiers in Genetics | Computational Genomics

Correction

Published on 12 Nov 2025

Correction: Integrative machine learning and Mendelian randomization identify causal laboratory biomarkers for coronary artery lesions in Kawasaki disease: a prospective study

in Computational Genomics

Hancao Yang
Meng Wu
Keqing Liang
Yi Li
Ran Yang
Beibei Yuan
Ming Wu
Jin Xu

Frontiers in Genetics

doi 10.3389/fgene.2025.1735649

263 views

Original Research

Accepted on 10 Nov 2025

Potential diagnostic markers and therapeutic targets for obstructive sleep apnea with comorbid depression based on bioinformatics analysis

in Computational Genomics

Xiao Guo
Yinfei Lu
Zao Tang
Xiang yu Zhou
Wanting Lin

Frontiers in Genetics

Mini Review

Published on 10 Nov 2025

Advances in post-processing methods for multiple sequence alignment

in Computational Genomics

Yixiao Zhai
Zitong Zhang
Zhen Li

Frontiers in Genetics

doi 10.3389/fgene.2025.1722317

660 views

Original Research

Published on 07 Nov 2025

KSRV: a Kernel PCA-Based framework for inferring spatial RNA velocity at single-cell resolution

in Computational Genomics

Yan He
Jian Jiang
Huahai Qiu
Ya-Zhou Shi
Ben-Gong Zhang

Frontiers in Genetics

doi 10.3389/fgene.2025.1695803

871 views

Correction

Published on 07 Nov 2025

Correction: Identification of shared diagnostic genes between osteoporosis and Crohn’s disease through integrated transcriptomic analysis and machine learning

in Computational Genomics

Guirong Yi
Peng Zhou
Qinxu Yang
Maosheng Zhao
Qiaoqiao Yang
Shensong Li
Chenpo Dang

Frontiers in Genetics

doi 10.3389/fgene.2025.1722642

405 views

Original Research

Published on 06 Nov 2025

Systems biology and experimental validation indicate DDIT4, FOXO1, and STAT3 as shared key genes linking osteoporosis and sarcopenia

in Computational Genomics

Wenjing Li
Yuechen Xing
Lihong Jiang
Jia Meng
Yue Wang
Renjie Tan
Yina Zhang

Frontiers in Genetics

doi 10.3389/fgene.2025.1630705

842 views

Original Research

Accepted on 05 Nov 2025

Hyperlipidemia-associated specific modules and hub genes revealed by integrative methods of WGCNA and MetaDE

in Computational Genomics

Zhiyi Zhao
Yin Cao
Anna Gu
Hanxin Yao

Frontiers in Genetics

103 views

Methods

Accepted on 04 Nov 2025

OFGPMA: Optimal Frequency Graph Representation Learning for pseudogene and miRNA Association Prediction

in Computational Genomics

Yongbin Zeng
Lixiang Xiong
Yungui Luo

Frontiers in Genetics

Review

Accepted on 03 Nov 2025

Bioinformatics identification of key genes and therapeutic targets for exercise intervention in polycystic ovary syndrome

in Computational Genomics

Xiaodie Yang
Hong Yang
Dongyi Shen
Qiang Zhang
Chan Zhu

Frontiers in Genetics

116 views

Original Research

Accepted on 30 Oct 2025

DMAGCL: A Dual-Masked Adaptive Graph Contrastive Learning Framework for Predicting circRNA-Drug Sensitivity

in Computational Genomics

Peng Wang
Yuqi Guo
Zejun Li
Di Tang
Mingmung Qi
Zhanyi Zhu
Lichao Zhang

Frontiers in Genetics

235 views

Review

Published on 28 Oct 2025

From bench to bytes: a practical guide to RNA sequencing data analysis

in Computational Genomics

Prabin Dawadi
Bivek Pokharel
Anita Shrestha
Dikshya Niraula
Afifa Naeem
Sayaka Miura
Mishal Roy
Saroj Nepal

Frontiers in Genetics

doi 10.3389/fgene.2025.1697922

2,025 views

Methods

Accepted on 27 Oct 2025

A Network-Based Discovery of Prognostic Markers in Recurrent IDH wild-type Gliomas

in Computational Genomics

Yang Liu
Jason T. Huse
Kasthuri Kannan

Frontiers in Genetics

145 views

Original Research

Published on 23 Oct 2025

Multi-omics identification and validation of oxidative phosphorylation–related hub genes in schizophrenia

in Computational Genomics

Yu Zhou
Shuang Zhang
Yao-Xia Liu
Xin Dai
Ting Zhang
Xiao-Tao Xu
Sheng-Nan Deng
Min-Yan Yang
Zhen Fan

Frontiers in Genetics

doi 10.3389/fgene.2025.1690947

1,368 views

Original Research

Published on 16 Oct 2025

CGSDA: inferring snoRNA-disease associations via ChebNetII and GatedGCN

in Computational Genomics

Yongfu Zou
Yusong Lu
Shanghui Lu
Zhanliang Wei
Le Li
Shuilin Liao
Ting Zeng
Yi Zhang
Rui Miao

Frontiers in Genetics

doi 10.3389/fgene.2025.1684484

961 views

Original Research

Published on 14 Oct 2025

Identification of key genes for heart failure in dilated cardiomyopathy in different populations

in Computational Genomics

Yue Yu
Chentian Xue
Dong Ji
Wei Sheng
Xiang Gao
Xize Wu
Chengyan Wu

Frontiers in Genetics

doi 10.3389/fgene.2025.1618390

1,611 views

Review

Published on 14 Oct 2025

Gene-LLMs: a comprehensive survey of transformer-based genomic language models for regulatory and clinical genomics

in Computational Genomics

P. Balakrishnan
A. Anny Leema
V. Dhivya Shree
C. Mohammad Saad
A. Mohan Babu

Frontiers in Genetics

doi 10.3389/fgene.2025.1634882

2,588 views