Frontiers in Genetics | Computational Genomics

Methods

Published on 17 Feb 2025

WCSGNet: a graph neural network approach using weighted cell-specific networks for cell-type annotation in scRNA-seq

in Computational Genomics

Yi-Ran Wang
Pu-Feng Du

Frontiers in Genetics

doi 10.3389/fgene.2025.1553352

652 views

Original Research

Accepted on 13 Feb 2025

Role of lactylation and Immune Infiltration in Atherosclerosis: Novel Insights from Bioinformatics Analyses

in Computational Genomics

Jintao Qian
Qing Zhou

Frontiers in Genetics

doi 10.3389/fgene.2025.1520325

Original Research

Accepted on 11 Feb 2025

Exploring the Oncogenic Role and Prognostic Value of CKS1B in Human Lung Adenocarcinoma and Squamous Cell Carcinoma

in Computational Genomics

Md Solayman Hossain
Tariqul Islam Tusar
Nairita Ahsan Faruqui
Tanjim Ishraq Rahaman
Yasin Arafath Sharker
Shimran Saharia Santo
Abu Tayab Moin
Yusha Araf
Ibrahim Khalil Afif
Shoaib Saikat

Frontiers in Genetics

doi 10.3389/fgene.2025.1449466

123 views

Original Research

Published on 11 Feb 2025

Dual graph-embedded fusion network for predicting potential microbe-disease associations with sequence learning

in Computational Genomics

Junlong Wu
Liqi Xiao
Liu Fan
Lei Wang
Xianyou Zhu

Frontiers in Genetics

doi 10.3389/fgene.2025.1511521

464 views

Data Report

Published on 10 Feb 2025

Exploring the taxonomical and functional profiles of marine microorganisms in Submarine Groundwater Discharge vent water from Mabini, Batangas, Philippines through metagenome-assembled genomes

in Computational Genomics

Joshua T. Veluz
Laurence Anthony N. Mallari
Paul Christian T. Gloria
Maria Auxilia T. Siringan

Frontiers in Genetics

doi 10.3389/fgene.2025.1522253

851 views

Original Research

Published on 06 Feb 2025

Exploring the relationship between sepsis and Golgi apparatus dysfunction: bioinformatics insights and diagnostic marker discovery

in Computational Genomics

Wanli Ma
Xinyi Liu
Ran Yu
Jiannan Song
Lina Hou
Ying Guo
Hongwei Wu
Dandan Feng
Qi Zhou
Haibo Li

Frontiers in Genetics

doi 10.3389/fgene.2025.1483493

668 views

Editorial

Published on 05 Feb 2025

Editorial: Towards the embedding of artificial intelligence into synthetic organisms: engineering intelligence in microorganisms

in Computational Genomics

Martín Eduardo Gutiérrez
Rafael Lahoz-Beltrá
Alberto J. Donayre-Torres

Frontiers in Genetics

doi 10.3389/fgene.2025.1562092

581 views

Original Research

Published on 04 Feb 2025

A structural genomics approach to investigate Dystrophin mutations and their impact on the molecular pathways of Duchenne muscular dystrophy

in Computational Genomics

Abdelbaset Mohamed Elasbali
Farah Anjum
Osama A. AlKhamees
Waleed Abu Al-Soud
Mohd Adnan
Anas Shamsi
Md. Imtaiyaz Hassan

Frontiers in Genetics

doi 10.3389/fgene.2025.1517707

922 views

Original Research

Accepted on 31 Jan 2025

Predicting Diabetes Complications from Electronic Health Record Visits Using

in Computational Genomics

Daniel Voskergian
Malik Yousef
Burcu Bakir-Gungor

Frontiers in Genetics

doi 10.3389/fgene.2025.1451290

Original Research

Published on 29 Jan 2025

Identifying health risk determinants and molecular targets in patients with idiopathic pulmonary fibrosis via combined differential and weighted gene co-expression analysis

in Computational Genomics

Abu Tayab Moin
Md. Asad Ullah
Jannatul Ferdous Nipa
Mohammad Sheikh Farider Rahman
Afsana Emran
Md. Minhazul Islam
Swapnil Das
Tawsif Al Arian
Mohammad Mahfuz Enam Elahi
Mukta Akter

Frontiers in Genetics

doi 10.3389/fgene.2024.1496462

1,306 views

Original Research

Published on 29 Jan 2025

Quadratic descriptors and reduction methods in a two-layered model for compound inference

in Computational Genomics

Jianshen Zhu
Naveed Ahmed Azam
Shengjuan Cao
Ryota Ido
Kazuya Haraguchi
Liang Zhao
Hiroshi Nagamochi
Tatsuya Akutsu

Frontiers in Genetics

doi 10.3389/fgene.2024.1483490

450 views

Original Research

Published on 29 Jan 2025

Antimicrobial resistance in diverse urban microbiomes: uncovering patterns and predictive markers

in Computational Genomics

Rodolfo Brizola Toscan
Wojciech Lesiński
Piotr Stomma
Balakrishnan Subramanian
Paweł P. Łabaj
Witold R. Rudnicki

Frontiers in Genetics

doi 10.3389/fgene.2025.1460508

848 views

Brief Research Report

Published on 27 Jan 2025

Characterization of novel human endogenous retrovirus structures on chromosomes 6 and 7

in Computational Genomics

Nicholas Pasternack
Ole Paulsen
Avindra Nath

Frontiers in Genetics

doi 10.3389/fgene.2025.1498978

652 views

Original Research

Published on 22 Jan 2025

In silico design of an epitope-based vaccine ensemble for fasliolopsiasis

in Computational Genomics

Ruchishree Konhar
Kanhu Charan Das
Aiboklang Nongrum
Rohan Raj Samal
Shailesh Kumar Sarangi
Devendra Kumar Biswal

Frontiers in Genetics

doi 10.3389/fgene.2024.1451853

784 views

Original Research

Published on 22 Jan 2025

Machine learning potential predictor of idiopathic pulmonary fibrosis

in Computational Genomics

Chenchun Ding
Quan Liao
Renjie Zuo
Shichao Zhang
Zhenzhen Guo
Junjie He
Ziwei Ye
Weibin Chen
Sunkui Ke

Frontiers in Genetics

doi 10.3389/fgene.2024.1464471

1,154 views

Original Research

Published on 15 Jan 2025

Exploring prognosis and therapeutic strategies for HBV-HCC patients based on disulfidptosis-related genes

in Computational Genomics

Chuankuo Zhang
Xing Zhang
Shengjie Dai
Wenjun Yang

Frontiers in Genetics

doi 10.3389/fgene.2024.1522484

1,263 views

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Articles

WCSGNet: a graph neural network approach using weighted cell-specific networks for cell-type annotation in scRNA-seq

Role of lactylation and Immune Infiltration in Atherosclerosis: Novel Insights from Bioinformatics Analyses

Exploring the Oncogenic Role and Prognostic Value of CKS1B in Human Lung Adenocarcinoma and Squamous Cell Carcinoma

Dual graph-embedded fusion network for predicting potential microbe-disease associations with sequence learning

Exploring the taxonomical and functional profiles of marine microorganisms in Submarine Groundwater Discharge vent water from Mabini, Batangas, Philippines through metagenome-assembled genomes

Exploring the relationship between sepsis and Golgi apparatus dysfunction: bioinformatics insights and diagnostic marker discovery

Editorial: Towards the embedding of artificial intelligence into synthetic organisms: engineering intelligence in microorganisms

A structural genomics approach to investigate Dystrophin mutations and their impact on the molecular pathways of Duchenne muscular dystrophy

Predicting Diabetes Complications from Electronic Health Record Visits Using

Identifying health risk determinants and molecular targets in patients with idiopathic pulmonary fibrosis via combined differential and weighted gene co-expression analysis

Quadratic descriptors and reduction methods in a two-layered model for compound inference

Antimicrobial resistance in diverse urban microbiomes: uncovering patterns and predictive markers

Characterization of novel human endogenous retrovirus structures on chromosomes 6 and 7

In silico design of an epitope-based vaccine ensemble for fasliolopsiasis

Machine learning potential predictor of idiopathic pulmonary fibrosis

Exploring prognosis and therapeutic strategies for HBV-HCC patients based on disulfidptosis-related genes