Frontiers in Genetics | Computational Genomics

Original Research

Published on 04 Jun 2024

Identification of apoptosis-immune-related gene signature and construction of diagnostic model for sepsis based on single-cell sequencing and bulk transcriptome analysis

in Computational Genomics

Zhongyi Sun
Yanan Hu
Jiachen Qu
Qiuyue Zhao
Han Gao
Zhiyong Peng

Frontiers in Genetics

doi 10.3389/fgene.2024.1389630

2,030 views

Original Research

Published on 30 May 2024

Prediction of miRNAs and diseases association based on sparse autoencoder and MLP

in Computational Genomics

Si-Lin Sun
Bing-Wei Zhou
Sheng-Zheng Liu
Yu-Han Xiu
Anas Bilal
Hai-Xia Long

Frontiers in Genetics

doi 10.3389/fgene.2024.1369811

1,155 views

Review

Published on 30 May 2024

A war on many fronts: cross disciplinary approaches for novel cancer treatment strategies

in Computational Genomics

Adriana Del Pino Herrera
Meghan C. Ferrall-Fairbanks

Frontiers in Genetics

doi 10.3389/fgene.2024.1383676

1,463 views

Original Research

Published on 28 May 2024

Identification of biomarkers associated with ferroptosis in diabetic retinopathy based on WGCNA and machine learning

in Computational Genomics

Hui-qing Guo
Rong Xue
Guangming Wan

Frontiers in Genetics

doi 10.3389/fgene.2024.1376771

1,320 views
2 citations

Methods

Published on 23 May 2024

Specific feature recognition on group specific networks (SFR-GSN): a biomarker identification model for cancer stages

in Computational Genomics

Bolin Chen
Yuxin Wang
Jinlei Zhang
Yourui Han
Hamza Benhammouda
Jun Bian
Ruiming Kang
Xuequn Shang

Frontiers in Genetics

doi 10.3389/fgene.2024.1407072

823 views
2 citations

Original Research

Published on 17 May 2024

Designing a multi-epitope vaccine against Shigella dysenteriae using immuno-informatics approach

in Computational Genomics

Hurria Qureshi
Amina Basheer
Muhammad Faheem
Muhammad Waqar Arshad
Sunil Kumar Rai
Syed Babar Jamal

Frontiers in Genetics

doi 10.3389/fgene.2024.1361610

2,180 views
2 citations

Original Research

Published on 10 May 2024

LcDel: deletion variation detection based on clustering and long reads

in Computational Genomics

Yanan Yu
Runtian Gao
Junwei Luo

Frontiers in Genetics

doi 10.3389/fgene.2024.1404415

903 views

Original Research

Published on 10 May 2024

BJLD-CMI: a predictive circRNA-miRNA interactions model combining multi-angle feature information

in Computational Genomics

Yi-Xin Zhao
Chang-Qing Yu
Li-Ping Li
Deng-Wu Wang
Hui-Fan Song
Yu Wei

Frontiers in Genetics

doi 10.3389/fgene.2024.1399810

1,089 views
1 citation

Original Research

Published on 09 May 2024

Bipartite networks represent causality better than simple networks: evidence, algorithms, and applications

in Computational Genomics

Bingran Shen
Gloria M. Coruzzi
Dennis Shasha

Frontiers in Genetics

doi 10.3389/fgene.2024.1371607

1,545 views
1 citation

Original Research

Published on 09 May 2024

Transient receptor potential channels’ genes forecast cervical cancer outcomes and illuminate its impact on tumor cells

in Computational Genomics

Shan Jiang
Xuefen Lin
Qiaoling Wu
Jianfeng Zheng
Zhaolei Cui
Xintong Cai
Yanhong Li
Chaoqiang Zheng
Yang Sun

Frontiers in Genetics

doi 10.3389/fgene.2024.1391842

1,223 views

Original Research

Published on 06 May 2024

CD-Loop: a chromatin loop detection method based on the diffusion model

in Computational Genomics

Jiquan Shen
Yang Wang
Junwei Luo

Frontiers in Genetics

doi 10.3389/fgene.2024.1393406

1,399 views

Original Research

Published on 06 May 2024

MIFAM-DTI: a drug-target interactions predicting model based on multi-source information fusion and attention mechanism

in Computational Genomics

Jianwei Li
Lianwei Sun
Lingbo Liu
Ziyu Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1381997

1,888 views
2 citations

Original Research

Published on 30 Apr 2024

In search of the ratio of miRNA expression as robust biomarkers for constructing stable diagnostic models among multi-center data

in Computational Genomics

Cuidie Ma
Yonghao Zhang
Rui Ding
Han Chen
Xudong Wu
Lida Xu
Changyuan Yu

Frontiers in Genetics

doi 10.3389/fgene.2024.1381917

1,417 views
1 citation

Original Research

Published on 26 Apr 2024

Predict lncRNA-drug associations based on graph neural network

in Computational Genomics

Peng Xu
Chuchu Li
Jiaqi Yuan
Zhenshen Bao
Wenbin Liu

Frontiers in Genetics

doi 10.3389/fgene.2024.1388015

1,691 views
25 citations

Original Research

Published on 25 Apr 2024

Bayesian hidden mark interaction model for detecting spatially variable genes in imaging-based spatially resolved transcriptomics data

in Computational Genomics

Jie Yang
Xi Jiang
Kevin Wang Jin
Sunyoung Shin
Qiwei Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1356709

1,272 views
2 citations

Original Research

Published on 24 Apr 2024

A multi-organization epigenetic age prediction based on a channel attention perceptron networks

in Computational Genomics

Jian Zhao
Haixia Li
Jing Qu
Xizeng Zong
Yuchen Liu
Zhejun Kuang
Han Wang

Frontiers in Genetics

doi 10.3389/fgene.2024.1393856

1,229 views
2 citations

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Articles

Identification of apoptosis-immune-related gene signature and construction of diagnostic model for sepsis based on single-cell sequencing and bulk transcriptome analysis

Prediction of miRNAs and diseases association based on sparse autoencoder and MLP

A war on many fronts: cross disciplinary approaches for novel cancer treatment strategies

Identification of biomarkers associated with ferroptosis in diabetic retinopathy based on WGCNA and machine learning

Specific feature recognition on group specific networks (SFR-GSN): a biomarker identification model for cancer stages

Designing a multi-epitope vaccine against Shigella dysenteriae using immuno-informatics approach

LcDel: deletion variation detection based on clustering and long reads

BJLD-CMI: a predictive circRNA-miRNA interactions model combining multi-angle feature information

Bipartite networks represent causality better than simple networks: evidence, algorithms, and applications

Transient receptor potential channels’ genes forecast cervical cancer outcomes and illuminate its impact on tumor cells

CD-Loop: a chromatin loop detection method based on the diffusion model

MIFAM-DTI: a drug-target interactions predicting model based on multi-source information fusion and attention mechanism

In search of the ratio of miRNA expression as robust biomarkers for constructing stable diagnostic models among multi-center data

Predict lncRNA-drug associations based on graph neural network

Bayesian hidden mark interaction model for detecting spatially variable genes in imaging-based spatially resolved transcriptomics data

A multi-organization epigenetic age prediction based on a channel attention perceptron networks