Frontiers in Genetics | Genomics of Plants and the Phytoecosystem

Original Research

Published on 09 Jul 2025

Genome-wide identification of GATA family genes in sweet potato (Ipomoea batatas L.) and their expression patterns under abiotic stress

in Genomics of Plants and the Phytoecosystem

Chong Wang
Mengjiao Lan
Manqiu Xiao
Ying Peng
Hao Pan
Jiaqi Deng
Wensheng Wu

Frontiers in Genetics

doi 10.3389/fgene.2025.1635749

2,419 views
1 citation

Original Research

Published on 03 Jul 2025

Genome-wide association study and haplotype analyses reveal the genetic architecture of agronomic traits and sugars in sweet sorghum

in Genomics of Plants and the Phytoecosystem

Abdullah Bin Umar
Ajay Prasanth Ramalingam
Bushra Sadia
Faisal Saeed Awan
Farooq Ahmad Khan
Mariam Nasir
Amy Bernardo
Paul St. Amand
Guihua Bai
P. V. Vara Prasad

Frontiers in Genetics

doi 10.3389/fgene.2025.1611863

2,876 views

Editorial

Published on 03 Jul 2025

Editorial: Multi-omics and molecular biology studies on abiotic stress in crops

in Genomics of Plants and the Phytoecosystem

Xiaobo Luo
Georgia Ntatsi
Rong Zhou
Mintao Sun

Frontiers in Genetics

doi 10.3389/fgene.2025.1607710

1,847 views

Original Research

Published on 02 Jul 2025

Optimizing the single-step model for predicting fumonisins resistance in maize hybrids accounting for the genotype-by-environment interaction

in Genomics of Plants and the Phytoecosystem

Jeniffer Santana Pinto Coelho Evangelista
Kaio Olimpo das Graças Dias
Maria Marta Pastina
Saulo Chaves
Lauro José Moreira Guimarães
Jorge Hidalgo
Julian Garcia-Abadillo
Reyna Persa
Valéria Aparecida Vieira Queiroz
Dagma Dionísia da Silva

Frontiers in Genetics

doi 10.3389/fgene.2025.1475452

1,584 views

Original Research

Published on 18 Jun 2025

A xyloglucan endotransglucosylase/hydrolase gene, IbXTH16, increases cold tolerance in transgenic sweetpotato

in Genomics of Plants and the Phytoecosystem

Tao Yu
Jiaquan Pan
Sitong Liu
Zitong Yang
Zhenlei Liu

Frontiers in Genetics

doi 10.3389/fgene.2025.1629260

1,457 views

Original Research

Published on 18 Jun 2025

Whole genome sequencing and functional annotation of Fusarium oxysporum f. sp. lentis to unravel virulence and secondary metabolite biosynthesis gene clusters

in Genomics of Plants and the Phytoecosystem

Sanjay Kharte
Ashish Kumar
Priyamvada Mishra
R. S. Ramakrishnan
Stuti Sharma
Nishi Mishra
Puneet Singh Chauhan
Radheshyam Sharma
Vedant Gautam
Shweta Tiwari

Frontiers in Genetics

doi 10.3389/fgene.2025.1585510

3,290 views

Original Research

Published on 12 Jun 2025

Identification of the U-box gene family in peach (Prunus persica) and functional analysis of PpPUB20 in response to salt stress

in Genomics of Plants and the Phytoecosystem

Huiwen Zhang
Ruxuan Guo
Xiaoshuang Zhang
Chongyu Zhao
Junkai Wu
Xiao Xiao
Yanhong Shen
Chunsheng Liu
Gang Li
Kai Su

Frontiers in Genetics

doi 10.3389/fgene.2025.1549981

1,900 views

Data Report

Published on 05 Jun 2025

K-rice: a comprehensive database of Korean rice germplasm variants

in Genomics of Plants and the Phytoecosystem

Jeong-Gu Kim
Gyu-Hwang Park
Jinhyun Kim
Jinho Jeong
Tae-Ho Lee

Frontiers in Genetics

doi 10.3389/fgene.2025.1544652

1,981 views

Original Research

Published on 30 May 2025

Effects of salinity stress on morphological structure, physiology, and mRNA expression in different wheat (Triticum aestivum L.) cultivars

in Genomics of Plants and the Phytoecosystem

Xiaohui Sun
Yuliu Tan
Yumei Zhang
Weiwei Guo
Ximei Li
Nataliia Golub
Lili Zhang
Huifang Wang

Frontiers in Genetics

doi 10.3389/fgene.2025.1535610

3,734 views
1 citation

Original Research

Published on 29 May 2025

Elucidating the role of pyrabactin-like receptors of finger millet under drought and salinity stress: an insight into in silico, machine learning and molecular approaches

in Genomics of Plants and the Phytoecosystem

Varsha Rani
Theivanayagam Maharajan
Shefali Singh
D. C. Joshi
Ramwant Gupta
Dinesh Yadav

Frontiers in Genetics

doi 10.3389/fgene.2025.1598523

2,134 views

Original Research

Published on 15 May 2025

Genome-wide identification and expression analysis of the WRKY transcription factors related to sesquiterpenes biosynthesis in Atractylodes lancea

in Genomics of Plants and the Phytoecosystem

Hua Liang
Weiwei Liu
Zhiqiang Zhao
Yaqian Li
Liangping Zha

Frontiers in Genetics

doi 10.3389/fgene.2025.1551991

1,871 views
1 citation

Data Report

Published on 14 May 2025

Complete assembly of the organellar genome of Rubroshorea johorensis utilizing advanced long-read sequencing technologies

in Genomics of Plants and the Phytoecosystem

Aditya Nugroho
Evayusvita Rustam
Nurin Widyani
Fitri Indriani
Dede J. Sudrajat
Mohammad Agus Salim
Muhammad Majiidu
Fifi Gus Dwiyanti
Rahadian Pratama
Iskandar Z. Siregar

Frontiers in Genetics

doi 10.3389/fgene.2025.1574266

2,202 views

Original Research

Published on 14 May 2025

Scaffolded and annotated nuclear and organelle genomes of the North American brown alga Saccharina latissima

in Genomics of Plants and the Phytoecosystem

Kelly DeWeese
Gary Molano
Sara Calhoun
Anna Lipzen
Jerry Jenkins
Melissa Williams
Christopher Plott
Jayson Talag
Jane Grimwood
Jean-Luc Jannink

Frontiers in Genetics

doi 10.3389/fgene.2025.1494480

2,902 views
1 citation

Original Research

Published on 08 May 2025

Genetic dissection of yield and yield-related traits in mungbean based on QTL meta-analysis

in Genomics of Plants and the Phytoecosystem

Binbin Du
Qifei Wang
Song Gao
Fan Yang
Lei Zhang
Xiao Zhang
Dongao Huo
Jia Wu
Xingen Zhang
Fang Li

Frontiers in Genetics

doi 10.3389/fgene.2025.1600979

2,165 views

Original Research

Published on 23 Apr 2025

Complete mitochondrial genome of Ficus hirta and its comparative analysis

in Genomics of Plants and the Phytoecosystem

Wangdong Deng
Xinyi Cai

Frontiers in Genetics

doi 10.3389/fgene.2025.1530105

1,923 views

Original Research

Published on 16 Apr 2025

Gaining insights into genomic regions associated with Chilo partellus resistance in teosinte-derived maize population

in Genomics of Plants and the Phytoecosystem

Ramandeep Kaur
Gurpreet Kaur
Navpreet
Ashmita
Jawala Jindal
Ramesh Kumar
Pardeep Kumar
Yogesh Vikal
Priti Sharma

Frontiers in Genetics

doi 10.3389/fgene.2025.1577830

1,880 views

Original Research

Published on 08 Apr 2025

Comparative analysis of chloroplast genomes in three Araceae species: genomic difference, genetic distance and species morphology association

in Genomics of Plants and the Phytoecosystem

Wengang Li
Jingru Liu
Siqin Wang
Ying Ma
Lulu Cui
Yingxian Yao
Ke Sun
Lili Luo

Frontiers in Genetics

doi 10.3389/fgene.2025.1496262

2,143 views
1 citation

Original Research

Published on 02 Apr 2025

Exploration of folate and its derivatives in grains of wheat with different colors

in Genomics of Plants and the Phytoecosystem

Peng Tian
Yangna Liu
Yingli Cheng
Bin Yang
Yuzhi Wang
Bangbang Wu

Frontiers in Genetics

doi 10.3389/fgene.2025.1549122

2,057 views

Original Research

Published on 26 Mar 2025

Identification of candidate genes for drought tolerance in soybean through QTL mapping and gene expression analysis

in Genomics of Plants and the Phytoecosystem

Gi-Rim Park
Seon-Hwa Bae
Beom-Kyu Kang
Jeong-Hyun Seo
Jae-Hyeon Oh

Frontiers in Genetics

doi 10.3389/fgene.2025.1564160

2,701 views
1 citation

Original Research

Published on 26 Mar 2025

Genome-wide identification, phylogeny, and expression analysis of PEBP gene family in Castanea mollissima

in Genomics of Plants and the Phytoecosystem

Yujuan Tian
Jinxin Wang
Xiangyu Wang
Dongsheng Wang
Xuan Wang
Jing Liu
Haie Zhang
Jingzheng Zhang
Liyang Yu

Frontiers in Genetics

doi 10.3389/fgene.2025.1530910

2,185 views
2 citations

Original Research

Published on 20 Mar 2025

Effects of drought pretreatment on the morphology traits, biomass, and stoichiometric characteristics of the desert ephemeral plant

in Genomics of Plants and the Phytoecosystem

Qian Liu
Hongmin Li
Chen Gong
Qianli Zhang
Tao Pan
Zhaodan Cao
Yanfeng Chen

Frontiers in Genetics

doi 10.3389/fgene.2025.1534894

1,322 views

Original Research

Published on 19 Mar 2025

Enhancing wheat β-glucan content through precision crossbreeding: development and evaluation of biofortified lines with improved nutritional and agronomic traits

in Genomics of Plants and the Phytoecosystem

Upendra Kumar
Sourav Panigrahi
Rita Goswami
Yogita Singh
Priyanka Balyan
Prexha Kapoor
Sundip Kumar
Krishna Pal Singh
Farkhandah Jan
Reyazul Rouf Mir

Frontiers in Genetics

doi 10.3389/fgene.2025.1532956

1,661 views

Review

Published on 18 Mar 2025

Cotton under heat stress: a comprehensive review of molecular breeding, genomics, and multi-omics strategies

in Genomics of Plants and the Phytoecosystem

Tahira Luqman
Manzoor Hussain
Syed Riaz Ahmed
Iram Ijaz
Zahra Maryum
Sahar Nadeem
Zafran Khan
Sana Muhy Ud Din Khan
Mohammad Aslam
Yongming Liu

Frontiers in Genetics

doi 10.3389/fgene.2025.1553406

7,436 views
8 citations

Original Research

Published on 03 Mar 2025

Identification of QTL for branch traits in soybean (Glycine max L.) and its application in genomic selection

in Genomics of Plants and the Phytoecosystem

Qichao Yang
Jing Wang
Yajun Xiong
Alu Mao
Zhiqing Zhang
Yijie Chen
Shirui Teng
Zhiyu Liu
Jun Wang
Jian Song

Frontiers in Genetics

doi 10.3389/fgene.2025.1484146

2,131 views

904 articles

articles

Genome-wide identification of GATA family genes in sweet potato (Ipomoea batatas L.) and their expression patterns under abiotic stress

Genome-wide association study and haplotype analyses reveal the genetic architecture of agronomic traits and sugars in sweet sorghum

Editorial: Multi-omics and molecular biology studies on abiotic stress in crops

Optimizing the single-step model for predicting fumonisins resistance in maize hybrids accounting for the genotype-by-environment interaction

A xyloglucan endotransglucosylase/hydrolase gene, IbXTH16, increases cold tolerance in transgenic sweetpotato

Whole genome sequencing and functional annotation of Fusarium oxysporum f. sp. lentis to unravel virulence and secondary metabolite biosynthesis gene clusters

Identification of the U-box gene family in peach (Prunus persica) and functional analysis of PpPUB20 in response to salt stress

K-rice: a comprehensive database of Korean rice germplasm variants

Effects of salinity stress on morphological structure, physiology, and mRNA expression in different wheat (Triticum aestivum L.) cultivars

Elucidating the role of pyrabactin-like receptors of finger millet under drought and salinity stress: an insight into in silico, machine learning and molecular approaches

Genome-wide identification and expression analysis of the WRKY transcription factors related to sesquiterpenes biosynthesis in Atractylodes lancea

Complete assembly of the organellar genome of Rubroshorea johorensis utilizing advanced long-read sequencing technologies

Scaffolded and annotated nuclear and organelle genomes of the North American brown alga Saccharina latissima

Genetic dissection of yield and yield-related traits in mungbean based on QTL meta-analysis

Complete mitochondrial genome of Ficus hirta and its comparative analysis

Gaining insights into genomic regions associated with Chilo partellus resistance in teosinte-derived maize population

Comparative analysis of chloroplast genomes in three Araceae species: genomic difference, genetic distance and species morphology association

Exploration of folate and its derivatives in grains of wheat with different colors

Identification of candidate genes for drought tolerance in soybean through QTL mapping and gene expression analysis

Genome-wide identification, phylogeny, and expression analysis of PEBP gene family in Castanea mollissima

Effects of drought pretreatment on the morphology traits, biomass, and stoichiometric characteristics of the desert ephemeral plant

Enhancing wheat β-glucan content through precision crossbreeding: development and evaluation of biofortified lines with improved nutritional and agronomic traits

Cotton under heat stress: a comprehensive review of molecular breeding, genomics, and multi-omics strategies

Identification of QTL for branch traits in soybean (Glycine max L.) and its application in genomic selection