Frontiers in Genetics | Genomics of Plants and the Phytoecosystem

Original Research

Published on 14 Aug 2025

Genetic basis of phenotypic diversity in C. stenophylla: a stepping stone for climate-adapted coffee cultivar development

in Genomics of Plants and the Phytoecosystem

Paul M. Lahai
Peter O. Aikpokpodion
Alieu Mohamed Bah
Mohamed T. Lahai
Lyndel W. Meinhardt
Seunghyun Lim
Ezekiel Ahn
Dapeng Zhang
Sunchung Park

Frontiers in Genetics

doi 10.3389/fgene.2025.1554029

471 views

Brief Research Report

Accepted on 12 Aug 2025

Codon Usage Bias Analysis of the WRKY Gene Family in Musa acuminata

in Genomics of Plants and the Phytoecosystem

Jiaman Sun
Ji Zhang
Jinzhong Zhang
Brett James Ferguson
Andrew Chen

Frontiers in Genetics

doi 10.3389/fgene.2025.1647037

Review

Published on 11 Aug 2025

Enhancing quality and climate resilient traits in vegetatively propagated polyploids: transgenic and genome editing advancements, challenges and future directions

in Genomics of Plants and the Phytoecosystem

Surya Krishna Sakthivel
Amaranatha Reddy Vennapusa
Kalpalatha Melmaiee

Frontiers in Genetics

doi 10.3389/fgene.2025.1599242

836 views

Original Research

Accepted on 06 Aug 2025

Drought Adaptation Index (DAI) Based on BLUP as a Selection Approach for Drought-Resilient Switchgrass Germplasm

in Genomics of Plants and the Phytoecosystem

Shiva Om Makaju
Hari Bahadur Chhetri
Chanaka Roshan Abeyratne
Mirko Pavicic
Hari Prasad Poudel
Jazib Ali Irfan
Anita Giabardo
Katrien M. Devos
Daniel Jacobson
Ali M Missaoui

Frontiers in Genetics

doi 10.3389/fgene.2025.1626083

132 views

Editorial

Accepted on 04 Aug 2025

Editorial: Genome-Wide Identification of Functional Markers to Enhance Molecular Breeding Efforts in Agriculturally Important, Underutilized, and Less Explored Plant Species

in Genomics of Plants and the Phytoecosystem

Rajni Parmar
Sapna Thakur
Ram Kumar Sharma

Frontiers in Genetics

doi 10.3389/fgene.2025.1627482

151 views

Original Research

Accepted on 31 Jul 2025

Genomic Prediction Powered by Multi-Omics Data

in Genomics of Plants and the Phytoecosystem

OSVAL A. MONTESINOS-LOPEZ
Abelardo Montesinos-López
Alejandro Brandon
Ivan Delgado-Enciso
Moises Chavira-Flores
Jose Crossa
Flavio Breseghelo
Susanne Dreisigacker
Jin Sun
Guillermo Sebastián Gerard

Frontiers in Genetics

doi 10.3389/fgene.2025.1636438

300 views

Original Research

Published on 29 Jul 2025

Evaluation and genome-wide association study of saline–alkali tolerance in high-latitude rice resource populations

in Genomics of Plants and the Phytoecosystem

Rongsheng Wang
Tan Lv
Jingpeng Li
Juntao Ma
Yongli Wang
Lingwei Deng
Wan Li
Jun Zhang
Kun Li
Wei Zhang

Frontiers in Genetics

doi 10.3389/fgene.2025.1617034

818 views

Original Research

Published on 24 Jul 2025

Mechanism of nodulation and nitrogen fixation in Caucasian clover (Trifolium ambiguum Bieb.) based on transcriptomics and proteomics analyses

in Genomics of Plants and the Phytoecosystem

Jiawei Liu
Xinyan Hao
Yue Guo
Mingjiu Wang
Fan Huang

Frontiers in Genetics

doi 10.3389/fgene.2025.1600377

949 views

Original Research

Published on 23 Jul 2025

The chloroplast genome of the Peltigera elisabethae photobiont Chloroidium sp. W5 and its phylogenetic implications

in Genomics of Plants and the Phytoecosystem

Guldiyar Adil
Shenglei Liu
Xiaoyan Bao
Reyim Mamut

Frontiers in Genetics

doi 10.3389/fgene.2025.1602048

825 views

Original Research

Published on 15 Jul 2025

Mitochondrial genome complexity in Erodium stephanianum (Geraniaceae): nanopore sequencing reveals chloroplast gene transfer and DNA rearrangements

in Genomics of Plants and the Phytoecosystem

Xinchen Xu
Qingfei Meng
Na Li
Zichuan Zou
Haonan Yang
Ang Li
Fusheng Ge
Jian Meng
Zixue Ding

Frontiers in Genetics

doi 10.3389/fgene.2025.1641368

1,668 views

Original Research

Published on 09 Jul 2025

Genome-wide identification of GATA family genes in sweet potato (Ipomoea batatas L.) and their expression patterns under abiotic stress

in Genomics of Plants and the Phytoecosystem

Chong Wang
Mengjiao Lan
Manqiu Xiao
Ying Peng
Hao Pan
Jiaqi Deng
Wensheng Wu

Frontiers in Genetics

doi 10.3389/fgene.2025.1635749

1,473 views

Original Research

Published on 03 Jul 2025

Genome-wide association study and haplotype analyses reveal the genetic architecture of agronomic traits and sugars in sweet sorghum

in Genomics of Plants and the Phytoecosystem

Abdullah Bin Umar
Ajay Prasanth Ramalingam
Bushra Sadia
Faisal Saeed Awan
Farooq Ahmad Khan
Mariam Nasir
Amy Bernardo
Paul St. Amand
Guihua Bai
P. V. Vara Prasad

Frontiers in Genetics

doi 10.3389/fgene.2025.1611863

1,944 views

Editorial

Published on 03 Jul 2025

Editorial: Multi-omics and molecular biology studies on abiotic stress in crops

in Genomics of Plants and the Phytoecosystem

Xiaobo Luo
Georgia Ntatsi
Rong Zhou
Mintao Sun

Frontiers in Genetics

doi 10.3389/fgene.2025.1607710

1,370 views

Original Research

Published on 02 Jul 2025

Optimizing the single-step model for predicting fumonisins resistance in maize hybrids accounting for the genotype-by-environment interaction

in Genomics of Plants and the Phytoecosystem

Jeniffer Santana Pinto Coelho Evangelista
Kaio Olimpo das Graças Dias
Maria Marta Pastina
Saulo Chaves
Lauro José Moreira Guimarães
Jorge Hidalgo
Julian Garcia-Abadillo
Reyna Persa
Valéria Aparecida Vieira Queiroz
Dagma Dionísia da Silva

Frontiers in Genetics

doi 10.3389/fgene.2025.1475452

1,020 views

Original Research

Published on 18 Jun 2025

A xyloglucan endotransglucosylase/hydrolase gene, IbXTH16, increases cold tolerance in transgenic sweetpotato

in Genomics of Plants and the Phytoecosystem

Tao Yu
Jiaquan Pan
Sitong Liu
Zitong Yang
Zhenlei Liu

Frontiers in Genetics

doi 10.3389/fgene.2025.1629260

892 views

Original Research

Published on 18 Jun 2025

Whole genome sequencing and functional annotation of Fusarium oxysporum f. sp. lentis to unravel virulence and secondary metabolite biosynthesis gene clusters

in Genomics of Plants and the Phytoecosystem

Sanjay Kharte
Ashish Kumar
Priyamvada Mishra
R. S. Ramakrishnan
Stuti Sharma
Nishi Mishra
Puneet Singh Chauhan
Radheshyam Sharma
Vedant Gautam
Shweta Tiwari

Frontiers in Genetics

doi 10.3389/fgene.2025.1585510

1,944 views