Frontiers in Genetics

Technology and Code

Published on 09 Oct 2023

Genomic Variations Explorer (GenVarX): a toolset for annotating promoter and CNV regions using genotypic and phenotypic differences

Yen On Chan
Jana Biová
Anser Mahmood
Nicholas Dietz
Kristin Bilyeu
Mária Škrabišová
Trupti Joshi

Frontiers in Genetics

doi 10.3389/fgene.2023.1251382

2,748 views
5 citations

Original Research

Published on 09 Oct 2023

Learning the kernel for rare variant genetic association test

Isak Falk
Millie Zhao
Juba Nait Saada
Qi Guo

Frontiers in Genetics

doi 10.3389/fgene.2023.1245238

5,408 views
2 citations

Brief Research Report

Published on 06 Oct 2023

DNA cytosine deamination is associated with recurrent Somatic Copy Number Alterations in stomach adenocarcinoma

Yilin Shi
Huangxuan Shen

Frontiers in Genetics

doi 10.3389/fgene.2023.1231415

2,286 views
1 citation

Original Research

Published on 06 Oct 2023

Nucleotide-level prediction of CircRNA-protein binding based on fully convolutional neural network

Zhen Shen
Wei Liu
ShuJun Zhao
QinHu Zhang
SiGuo Wang
Lin Yuan

Frontiers in Genetics

doi 10.3389/fgene.2023.1283404

2,849 views
5 citations

Original Research

Published on 06 Oct 2023

Prioritization of risk genes for Alzheimer’s disease: an analysis framework using spatial and temporal gene expression data in the human brain based on support vector machine

Shiyu Wang
Xixian Fang
Xiang Wen
Congying Yang
Ying Yang
Tianxiao Zhang

Frontiers in Genetics

doi 10.3389/fgene.2023.1190863

3,242 views
6 citations

Original Research

Published on 06 Oct 2023

Prognostic risk of immune-associated signature in the microenvironment of brain gliomas

Yaling Tao
Junqi Zhu
Xiaoling Yu
Huaiwei Cong
Jinpeng Li
Ting Cai
Qian Chen

Frontiers in Genetics

doi 10.3389/fgene.2023.1208651

3,027 views
1 citation

Original Research

Published on 05 Oct 2023

TextNetTopics Pro, a topic model-based text classification for short text by integration of semantic and document-topic distribution information

Daniel Voskergian
Burcu Bakir-Gungor
Malik Yousef

Frontiers in Genetics

doi 10.3389/fgene.2023.1243874

4,723 views
12 citations

Original Research

Published on 05 Oct 2023

Population genetics of Camellia granthamiana, an endangered plant species with extremely small populations in China

Sufang Chen
Wenyan Li
Wei Li
Zhongcheng Liu
Xianggang Shi
Yanli Zou
Wenbo Liao
Qiang Fan

Frontiers in Genetics

doi 10.3389/fgene.2023.1252148

3,310 views
5 citations

Original Research

Published on 04 Oct 2023

Identifying potential DNA methylation markers for the detection of esophageal cancer in plasma

Bing Pei
Guodong Zhao
Zhixin Geng
Yue Wang
Menglin Wang
Xiaomei Wang
Shangmin Xiong
Minxue Zheng

Frontiers in Genetics

doi 10.3389/fgene.2023.1222617

4,209 views
6 citations

Original Research

Published on 04 Oct 2023

Endoplasmic reticulum stress related genome-wide Mendelian randomization identifies therapeutic genes for ulcerative colitis and Crohn’s disease

Menglong Zou
Qiaoli Liang
Wei Zhang
Ying Zhu
Yin Xu

Frontiers in Genetics

doi 10.3389/fgene.2023.1270085

9,399 views
14 citations

Brief Research Report

Published on 04 Oct 2023

Uniparental disomy: expanding the clinical and molecular phenotypes of whole chromosomes

Qi Chen
Yunpeng Chen
Lin Shi
Ying Tao
Xiaoguang Li
Xiaolan Zhu
Yan Yang
Wenlin Xu

Frontiers in Genetics

doi 10.3389/fgene.2023.1232059

8,191 views
4 citations

Brief Research Report

Published on 03 Oct 2023

Incidental finding at methylation-specific multiplex ligation-dependent probe amplification (MS-MLPA): how to proceed?

Africa Manero-Azua
Arrate Pereda
Isabel Llano-Rivas
Intza Garin
Guiomar Perez de Nanclares

Frontiers in Genetics

doi 10.3389/fgene.2023.1274056

3,571 views
1 citation

Original Research

Published on 03 Oct 2023

The genetics of urinary microbiome, an exploration of the trigger in calcium oxalate stone

Yuanyuan Yang
Lintao Miao
Yuchao Lu
Shaogang Wang

Frontiers in Genetics

doi 10.3389/fgene.2023.1260278

4,234 views
6 citations

Methods

Published on 03 Oct 2023

A syndrome differentiation model of TCM based on multi-label deep forest using biomedical text mining

Lejun Gong
Jindou Jiang
Shiqi Chen
Mingming Qi

Frontiers in Genetics

doi 10.3389/fgene.2023.1272016

4,756 views
11 citations

Original Research

Published on 03 Oct 2023

Comprehensive molecular expression profiling of SARS-CoV-associated factors in the endometrium across the menstrual cycle and elevated susceptibility in women with recurrent pregnancy loss

Ruofan Qi
Rui Guan
Shengyun Cai
Mingjuan Xu
Wen-jui Yang
Chi Chiu Wang

Frontiers in Genetics

doi 10.3389/fgene.2023.1246725

3,853 views
4 citations

Editorial

Published on 02 Oct 2023

Editorial: New insights in cellular and molecular biology of cancer stem cells

Karla Vazquez-Santillan
Ximena Bustamante-Marin
Elizabeth Ortiz-Sanchez

Frontiers in Genetics

doi 10.3389/fgene.2023.1297971

2,879 views

Original Research

Published on 02 Oct 2023

Immune-related signature of periodontitis and Alzheimer’s disease linkage

Jieqi Jin
Mengkai Guang
Simin Li
Yong Liu
Liwei Zhang
Bo Zhang
Menglin Cheng
Gerhard Schmalz
Xiaofeng Huang

Frontiers in Genetics

doi 10.3389/fgene.2023.1230245

5,362 views
6 citations

Original Research

Published on 02 Oct 2023

Open science and human genetic data: recommendations on South Africa’s Draft National Open Science Policy

Donrich Thaldar
Amy Gooden
Michaela Steytler

Frontiers in Genetics

doi 10.3389/fgene.2023.1248747

5,010 views
2 citations

Editorial

Published on 29 Sep 2023

Editorial: Genetics of female infertility

Masood Bazrgar
Hamid Gourabi

Frontiers in Genetics

doi 10.3389/fgene.2023.1297173

5,029 views
1 citation

Original Research

Published on 29 Sep 2023

Unraveling TIMP1: a multifaceted biomarker in colorectal cancer

Xiaode Qiu
Guangqian Quan
Wenquan Ou
Pengfei Wang
Xing Huang
Xinhua Li
Yufan Shen
Weifeng Yang
Jian Wang
Xiaohua Wu

Frontiers in Genetics

doi 10.3389/fgene.2023.1265137

9,816 views
21 citations

Original Research

Published on 29 Sep 2023

A genome-wide association study coupled with machine learning approaches to identify influential demographic and genomic factors underlying Parkinson’s disease

Md Asad Rahman
Jinling Liu

Frontiers in Genetics

doi 10.3389/fgene.2023.1230579

5,623 views
3 citations

Review

Published on 28 Sep 2023

Role of lncRNAs in acute pancreatitis: pathogenesis, diagnosis, and therapy

Jie Deng
Ziying Song
Xiaolan Li
Huiqing Shi
Shangqing Huang
Lijun Tang

Frontiers in Genetics

doi 10.3389/fgene.2023.1257552

3,973 views
7 citations

Original Research

Published on 27 Sep 2023

Target-capture full-length double-stranded cDNA long-read sequencing through Nanopore revealed novel intron retention in patient with tuberous sclerosis complex

Hiroki Ura
Sumihito Togi
Yo Niida

Frontiers in Genetics

doi 10.3389/fgene.2023.1256064

4,383 views
5 citations

Original Research

Published on 27 Sep 2023

Clinical interpretation of cell-based non-invasive prenatal testing for monogenic disorders including repeat expansion disorders: potentials and pitfalls

Line Dahl Jeppesen
Lotte Hatt
Ripudaman Singh
Palle Schelde
Katarina Ravn
Christian Liebst Toft
Maria Bach Laursen
Jakob Hedegaard
Inga Baasch Christensen
Bolette Hestbek Nicolaisen

Frontiers in Genetics

doi 10.3389/fgene.2023.1188472

6,874 views
5 citations

1,639 Publications

volumes

Genomic Variations Explorer (GenVarX): a toolset for annotating promoter and CNV regions using genotypic and phenotypic differences

Learning the kernel for rare variant genetic association test

DNA cytosine deamination is associated with recurrent Somatic Copy Number Alterations in stomach adenocarcinoma

Nucleotide-level prediction of CircRNA-protein binding based on fully convolutional neural network

Prioritization of risk genes for Alzheimer’s disease: an analysis framework using spatial and temporal gene expression data in the human brain based on support vector machine

Prognostic risk of immune-associated signature in the microenvironment of brain gliomas

TextNetTopics Pro, a topic model-based text classification for short text by integration of semantic and document-topic distribution information

Population genetics of Camellia granthamiana, an endangered plant species with extremely small populations in China

Identifying potential DNA methylation markers for the detection of esophageal cancer in plasma

Endoplasmic reticulum stress related genome-wide Mendelian randomization identifies therapeutic genes for ulcerative colitis and Crohn’s disease

Uniparental disomy: expanding the clinical and molecular phenotypes of whole chromosomes

Incidental finding at methylation-specific multiplex ligation-dependent probe amplification (MS-MLPA): how to proceed?

The genetics of urinary microbiome, an exploration of the trigger in calcium oxalate stone

A syndrome differentiation model of TCM based on multi-label deep forest using biomedical text mining

Comprehensive molecular expression profiling of SARS-CoV-associated factors in the endometrium across the menstrual cycle and elevated susceptibility in women with recurrent pregnancy loss

Editorial: New insights in cellular and molecular biology of cancer stem cells

Immune-related signature of periodontitis and Alzheimer’s disease linkage

Open science and human genetic data: recommendations on South Africa’s Draft National Open Science Policy

Editorial: Genetics of female infertility

Unraveling TIMP1: a multifaceted biomarker in colorectal cancer

A genome-wide association study coupled with machine learning approaches to identify influential demographic and genomic factors underlying Parkinson’s disease

Role of lncRNAs in acute pancreatitis: pathogenesis, diagnosis, and therapy

Target-capture full-length double-stranded cDNA long-read sequencing through Nanopore revealed novel intron retention in patient with tuberous sclerosis complex

Clinical interpretation of cell-based non-invasive prenatal testing for monogenic disorders including repeat expansion disorders: potentials and pitfalls