Frontiers in Microbiology

Original Research

Published on 21 May 2025

Evaluation of kefir consumption on gut microbial diversity in a healthy young population using full-length 16S rRNA sequencing

in Food Microbiology

Yejin Choi
Gi Beom Keum
Juyoun Kang
Hyunok Doo
Jinok Kwak
Haram Kim
Yeongjae Chae
Suyoung Lee
Hyunjin Yang
Sheena Kim

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1587831

9,604 views
1 citation

Original Research

Published on 21 May 2025

Gut mycobiome maturation and its determinants during early childhood: a comparison of ITS2 amplicon and shotgun metagenomic sequencing approaches

in Microorganisms in Vertebrate Digestive Systems

Timothy Heisel
Sara Gonia
Abrielle Dillon
Susan L. Hoops
Gabriel A. Al-Ghalith
Daryl Gohl
Sagori Mukhopadhyay
Karen Puopolo
Peter Kennedy
Michael J. Sadowsky

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1539750

3,006 views
1 citation

Original Research

Published on 21 May 2025

Comparative analysis of bacterial communities and environmental interactions in seawater and saline-alkali aquaculture ponds for Scylla paramamosain in northern China

in Aquatic Microbiology

Dongping Zhou
Yuanyuan Fu
Lei Liu
Weichuan Lin
Zhibin Lu
Yangfang Ye
Minglei Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1589304

2,980 views
2 citations

Methods

Published on 21 May 2025

Development and application of a highly sensitive quadruple droplet digital PCR method for simultaneous quantification of sulfonamide resistance genes

in Antimicrobials, Resistance and Chemotherapy

Xirong Yin
Jiayuan Nie
Huifang Tian
Lihong Duan
Lixia Wu
Xiangdong Xu
Yumei Guo
Ke Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1612740

3,181 views

Original Research

Published on 21 May 2025

Dietary preferences affect the gut microbiota of three snake species (Squamata: Colubridae)

in Microorganisms in Vertebrate Digestive Systems

Guangxiang Zhu
Huina Song
Mingwen Duan
Ji Wang
Jingxue Luo
Shijun Yang
Fei Wu
Jiuyan Jiang
Ji Chen
Wenjiao Tang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1559646

2,603 views
3 citations

Original Research

Published on 21 May 2025

Primary succession of microbial communities in an aquifer from the Covey Hill formation in Quebec, Canada

in Aquatic Microbiology

Samuel Beauregard-Tousignant
Cassandre Sara Lazar

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1568469

1,877 views

Original Research

Published on 21 May 2025

Biochar amendment alters rare microbial taxa and enhances wheat growth in alkaline farmland: insights into soil microbiome dynamics

in Terrestrial Microbiology

Jian-Qing Qi
Hai-Yan Yuan
Shu-Chen Sun
Eric Fru Zama
Bao-Xian Tao
Jin Liu
Bao-Hua Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1563712

2,694 views
3 citations

Original Research

Published on 21 May 2025

Enhancing lipid production in Nannochloropsis salina via RNAi-mediated downregulation of carbohydrate biosynthesis

in Microbiotechnology

Hyun Gi Koh
Kyungmoon Park
See-Hyoung Park
Minsik Kim
Nam Kyu Kang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1601691

2,987 views
4 citations

Original Research

Published on 21 May 2025

Establishment and function of the rhizosphere fungal community in rare and endangered plant Alsophila spinulosa

in Microbe and Virus Interactions with Plants

Zhang Hui-Min
Yan Ling-Bin
Yuan Dong-Mei
Liu Feng
Cao Xiu-Gang
Wang Dai-Yan
He Qin-Qin
Mu Jun
Yu Li-Fei
Liu Yuan

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1552748

2,515 views

Original Research

Published on 21 May 2025

Effects of dietary formic acid polymer supplementation on growth performance, blood parameters, and intestinal health in lipopolysaccharide-challenged broilers

in Microorganisms in Vertebrate Digestive Systems

Guohui Zhou
Yilin Ge
Yuemeng Fu
Changfei An
Changjin Li
Yang Li
Weiren Yang
Ning Jiao
Jiali Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1587832

2,735 views

Original Research

Published on 21 May 2025

Comprehensive risk assessment and control measures in the food service chain of hospitals nutrition department: a case study in Al-Ahsa Governorate, Kingdom of Saudi Arabia

in Food Microbiology

Farag Ali Saleh
Hisham Abdelmonem Mohamed
Muhammad Munir
Mutlag Mohammad Al Otaibi
Sahar Mostafa Kamel
Omar Mohammed Alsaif
Abdulaziz Ali Alqahtani
Malak Abdullah AlDabal

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1551446

7,517 views
3 citations

Original Research

Published on 21 May 2025

Microbial community structure and functional characteristics across the mucosal surfaces of olive flounder (Paralichthys olivaceus)

in Microbial Symbioses

Jihyun Yu
Min Joo Kang
Mi-Jeong Park
Gyeong Hak Han
Yun Jae Kim
Choong Hwan Noh
Kae Kyoung Kwon

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1587288

2,899 views
3 citations

Mini Review

Published on 21 May 2025

Expression regulation of bacterial lipase genes: a review

in Microbial Physiology and Metabolism

Dai-ming Zha
Yun-jun Yan

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1592059

2,756 views

Original Research

Published on 21 May 2025

Deglycosylated azithromycin alleviates cisplatin-evoked constipation in mice by altering host metabolome and gut microbiota composition

in Microorganisms in Vertebrate Digestive Systems

Xiaoting Gu
Shuwen Zhu
Weixue Tian
Xiaohe Li
Yutian Cai
Chaoyue Zheng
Xiang Xu
Conglu Zhao
Hongting Liu
Yao Sun

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1437662

2,834 views

Original Research

Published on 21 May 2025

Toward an effective delivery system of a microbial sink of the uremic toxin, p-cresol; an in vitro study with Thauera aminoaromatica S2

in Microbiotechnology

Prakit Saingam
Rosita Rasyid
Britt Abrahamson
Thomas J. Lie
Bruce J. Godfrey
Jonathan Himmelfarb
Mari K. H. Winkler

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1577556

2,671 views
5 citations

Original Research

Published on 21 May 2025

From single pioneers to complex pro- and eukaryotic microbial networks in soils along a glacier forefield chronosequence in continental Antarctica

in Extreme Microbiology

Rahma Amen
Lars Ganzert
Thomas Friedl
Nataliya Rybalka
Dirk Wagner

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1576898

4,518 views
2 citations

Original Research

Published on 21 May 2025

Isolation and characterization of methicillin-resistant Staphylococcus aureus phage SPB against MRSA planktonic cells and biofilm

in Phage Biology

Lan Ma
Yingyu Liu
Xiaofeng Zheng
Baili Zheng
Yaling Cheng
Yuxuan Cai
Yongchao Li
Wei Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1554182

4,584 views

Original Research

Published on 21 May 2025

ARGContextProfiler: extracting and scoring the genomic contexts of antibiotic resistance genes using assembly graphs

in Antimicrobials, Resistance and Chemotherapy

Nazifa Ahmed Moumi
Shafayat Ahmed
Connor Brown
Amy Pruden
Liqing Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1604461

3,220 views

Original Research

Published on 21 May 2025

Functional loss of rffG and rfbB, encoding dTDP-glucose 4,6-dehydratase, alters colony morphology, cell shape, motility and virulence in Salmonella Typhimurium

in Infectious Agents and Disease

Subhashish Chakraborty
Pip Banerjee
Joel P. Joseph
Sanmoy Pathak
Taru Verma
Aagosh Kishor Karhale
Deepti Chandra
Mrinmoy Das
Pritam Saha
Dipankar Nandi

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1572117

3,361 views

Original Research

Published on 21 May 2025

Correlation of the intestinal flora and its metabolites with the colonic transport function in functional constipation

in Microorganisms in Vertebrate Digestive Systems

Lunan Hu
Qihong Liu
Xiao Ke
Peilin Zhao
Wenyi Fang
Yan Ren

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1591697

3,868 views
3 citations

Systematic Review

Published on 21 May 2025

A bibliometric study of global trends in diabetic nephropathy and intestinal flora research

in Microorganisms in Vertebrate Digestive Systems

Nuo Wang
Xinyu Li
Hanjun Weng
Yijun Zhang
Qiurui Li
Xiaoxiao Luo
Yu Chen
Yiyang Dong

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1577703

4,611 views
2 citations

Original Research

Published on 21 May 2025

Development of a rapid on-site detection method for largemouth bass virus based on RPA-CRISPR/Cas12a system

in Virology

Na Li
Chunmei Dai
Yuelin Mao
Yimeng Zhang
Huiyuan Yan
Huijiao Wang
Yinghui Qin
Baicheng Huang
Xinjie Wang
Lunguang Yao

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1599006

3,282 views
4 citations

Original Research

Published on 20 May 2025

Biochemical characterization and bacterial diversity of Agrocybe aegerita during postharvest storage

in Food Microbiology

Cairong Yang
Jiezhi Yang
Yueju Zhou
Yi Ou
ZhiMeng Wang
Weiliang Qi
Renwei Huang
Songyue Chai
Hongling Yang
Yongfang Zhou

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1596093

2,157 views

Review

Published on 20 May 2025

The microbial landscape of tumors: a deep dive into intratumoral microbiota

in Microbial Symbioses

Sajjad Asgharzadeh
Maryam Pourhajibagher
Abbas Bahador

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1542142

4,285 views
7 citations

39,483 articles

articles

Evaluation of kefir consumption on gut microbial diversity in a healthy young population using full-length 16S rRNA sequencing

Gut mycobiome maturation and its determinants during early childhood: a comparison of ITS2 amplicon and shotgun metagenomic sequencing approaches

Comparative analysis of bacterial communities and environmental interactions in seawater and saline-alkali aquaculture ponds for Scylla paramamosain in northern China

Development and application of a highly sensitive quadruple droplet digital PCR method for simultaneous quantification of sulfonamide resistance genes

Dietary preferences affect the gut microbiota of three snake species (Squamata: Colubridae)

Primary succession of microbial communities in an aquifer from the Covey Hill formation in Quebec, Canada

Biochar amendment alters rare microbial taxa and enhances wheat growth in alkaline farmland: insights into soil microbiome dynamics

Enhancing lipid production in Nannochloropsis salina via RNAi-mediated downregulation of carbohydrate biosynthesis

Establishment and function of the rhizosphere fungal community in rare and endangered plant Alsophila spinulosa

Effects of dietary formic acid polymer supplementation on growth performance, blood parameters, and intestinal health in lipopolysaccharide-challenged broilers

Comprehensive risk assessment and control measures in the food service chain of hospitals nutrition department: a case study in Al-Ahsa Governorate, Kingdom of Saudi Arabia

Microbial community structure and functional characteristics across the mucosal surfaces of olive flounder (Paralichthys olivaceus)

Expression regulation of bacterial lipase genes: a review

Deglycosylated azithromycin alleviates cisplatin-evoked constipation in mice by altering host metabolome and gut microbiota composition

Toward an effective delivery system of a microbial sink of the uremic toxin, p-cresol; an in vitro study with Thauera aminoaromatica S2

From single pioneers to complex pro- and eukaryotic microbial networks in soils along a glacier forefield chronosequence in continental Antarctica

Isolation and characterization of methicillin-resistant Staphylococcus aureus phage SPB against MRSA planktonic cells and biofilm

ARGContextProfiler: extracting and scoring the genomic contexts of antibiotic resistance genes using assembly graphs

Functional loss of rffG and rfbB, encoding dTDP-glucose 4,6-dehydratase, alters colony morphology, cell shape, motility and virulence in Salmonella Typhimurium

Correlation of the intestinal flora and its metabolites with the colonic transport function in functional constipation

A bibliometric study of global trends in diabetic nephropathy and intestinal flora research

Development of a rapid on-site detection method for largemouth bass virus based on RPA-CRISPR/Cas12a system

Biochemical characterization and bacterial diversity of Agrocybe aegerita during postharvest storage

The microbial landscape of tumors: a deep dive into intratumoral microbiota