Frontiers in Microbiology

Original Research

Published on 07 Jan 2026

The application value and limitations of metagenomic detection technology based on cerebrospinal fluid samples in suspected central nervous system infection: a retrospective study

in Systems Microbiology

Qiujuan Feng
Baoyi Liu
Huazhao Liu
Yaqin Fan
Shanshan Gao
Jia Zhang
Yingjie Kuang
Wenshan Wang
Huiqiang Liang
Yulan Qiu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1689253

1,173 views

Original Research

Published on 07 Jan 2026

Differential gut microbiome composition in three-spined stickleback populations with contrasting levels of mercury accumulation

in Microorganisms in Vertebrate Digestive Systems

Marijn Kuizenga
Aruna M. Shankregowda
Prabhugouda Siriyappagouder
Vyshal Delahaut
Federico C. F. Calboli
Lieven Bervoets
Brijesh Singh Yadav
Filip A. M. Volckaert
Gudrun De Boeck
Joost A. M. Raeymaekers

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1673354

1,361 views

Original Research

Published on 07 Jan 2026

Comparison between metatranscriptomics and viral metagenomics, 16S, and host transcriptomics for comprehensive profiling of the respiratory microbiome and host response

in Systems Microbiology

Gregory Destras
Marina Sabatier
Antonin Bal
Bruno Simon
Quentin Semanas
Hadrien Regue
Theophile Boyer
Dominique Ploin
Yves Gillet
Bruno Lina

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1685035

1,933 views

Original Research

Published on 07 Jan 2026

Intercropping Amomum villosum enhances soil stratification, nutrient complementarity, and microbial communities in rubber plantations

in Microbe and Virus Interactions with Plants

Huabo Du
Yuchen Lin
Meijun Qi
Peng Qu
Zhenhuai Xu
Rong Lin
Chun Xie
Tengwei Xiao
Shilang Dong
Butian Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1720828

1,136 views

Systematic Review

Published on 07 Jan 2026

Efficacy and safety of probiotics combined with bismuth-containing quadruple therapy for Helicobacter pylori eradication: a systematic review and meta-analysis

in Infectious Agents and Disease

Shunhua Zhou
Yunfeng Yu
Jiaxuan Tian
Xiaojuan Wang
Meiyan Zeng
Houpan Song

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1704508

1,300 views

Original Research

Published on 07 Jan 2026

The association between history of appendectomy and gut microbiota composition: a follow-up cross-sectional study

in Microorganisms in Vertebrate Digestive Systems

Matija Hadžić
Paul Hammer
Carsten Krumbiegel
Olga Moskalenko
Andrija Karačić
Daria Hadžić

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1697138

1,447 views

Original Research

Published on 07 Jan 2026

Phage-based biocontrol of Salmonella and E. coli in raw chicken filets: optimizing phage-based solutions to enhance food safety under cooled storing conditions

in Food Microbiology

Oleksandra Berhilevych
Elisa Peh
Johanna Charlotte Vahle
Madeleine Plötz
Sophie Kittler

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1696826

1,061 views

Original Research

Published on 07 Jan 2026

Tannic acid delayed dietary fiber fermentation: dual mechanisms of enzyme inhibition and microbial community dynamics

in Microbial Symbioses

Liping Ren
Haoqiang Wang
Shunjing Luo
Chengmei Liu
Xiuting Hu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1751028

838 views

Systematic Review

Accepted on 06 Jan 2026

Impact of Non-Standardized Reporting on Reproducibility, Usability, and Integration in Nasopharyngeal Metagenomic Research: A Systematic Review

in Systems Microbiology

Monica Bustos
Kuncheng Song
Hayden Brochu
Qimin Zhang
Lakshmanan Iyer
Crystal Icenhour

Frontiers in Microbiology

133 views

Original Research

Published on 06 Jan 2026

Multi-mechanism synergistic remediation of phosphate-solubilizing bacteria under tetracycline and lead co-contamination stress: phosphate precipitation and organic acid complexation

in Microbiotechnology

Yanjie Zhou
Jiangyan Wu
Qi Tang
Huihui Chen
Yuan Liu
Haoming Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1744505

848 views

Review

Published on 06 Jan 2026

Mobile genetic elements in shaping Klebsiella pneumoniae pathogenicity

in Infectious Agents and Disease

Yanbing Li
Refath Farzana

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1730961

1,268 views

Original Research

Published on 06 Jan 2026

Effects of galactooligosaccharides on maternal metabolism and the gut microbiota during pregnancy

in Microorganisms in Vertebrate Digestive Systems

Jiayang Wan
Lin An
Zhenghong Ren
Huixia Yang
Jingmei Ma

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1679308

1,145 views

Original Research

Published on 06 Jan 2026

Integrated metabolomics and gut microbiota to reveal the anti-tumor mechanism of Jinfu’an decoction in tumor-bearing mice

in Microorganisms in Vertebrate Digestive Systems

Peiqin Li
Huiting Peng
Zhongming Huang
Zhe Sun
Yantao Li
Siqi Wu
Lin Lin
Shuqiao Zhang
Hongyu Li
Yang Cao

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1643268

1,079 views

Original Research

Published on 06 Jan 2026

Elaborating the molecular characteristics of corals’ different tolerance to environmental stress in Sanya Luhuitou based on multi-omics analysis

in Microbial Symbioses

Xiaoyu Tang
Xiangrui Guo
Hanzhang Wang
Qingsong Yang
Ying Zhang
Juan Ling
Hao Sun
Junde Dong
Yanying Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1664176

998 views

Mini Review

Published on 06 Jan 2026

Detonating a “time bomb”: how enteric infection stress triggers prophage induction in commensal microbiota and exacerbates disease progression

in Infectious Agents and Disease

Ling Yang
Yan Xu
Xinna Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1723549

853 views

Original Research

Published on 06 Jan 2026

Development and validation of a novel triplex droplet digital PCR assay for simultaneous detection of African swine fever virus, pseudorabies virus, and porcine parvovirus

in Virology

Jiarong Yu
Lu Zhu
Yuanyuan Zuo
Shengbin Gao
Qinghua Wang
Jiao Xu
Linlin Fang
Yumeng Liu
Shuang Liu
Xiaozhen Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1710807

1,403 views

Original Research

Published on 06 Jan 2026

Free-living amoebae and their role in Piscirickettsia salmonis transmission in Chilean Salmon aquaculture: insights from in vitro and in vivo studies

in Infectious Agents and Disease

Fernando A. Gómez
Bruno Milesi
Sergio H. Marshall

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1711258

1,168 views

Original Research

Published on 06 Jan 2026

Long-term biogas slurry fertilization alters rhizosphere soil metabolite profiles and microbial communities in poplar plantations

in Terrestrial Microbiology

Xiao-Xiao Gao
Xing-Ye Yu
Chun-Zhi Jin
Long Jin
Su Bu
Taihua Li
Hong-Hua Ruan
Kee-Sun Shin
Feng-Jie Jin

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1727035

1,298 views

Original Research

Published on 06 Jan 2026

Transcriptome analysis of Pseudomonas syringae pv. tomato DAPP-PG 215 in response to silver nanoparticles exposure

in Microbe and Virus Interactions with Plants

Benedetta Orfei
Joël F. Pothier
Luca Scotti
Antonio Aceto
Chiaraluce Moretti
Roberto Buonaurio
Theo H. M. Smits

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1714857

922 views

Review

Published on 06 Jan 2026

Mapping antibiotic resistance in Ghana: a narrative review of regional variations in antibiotic-resistant ESKAPEE pathogens

in Antimicrobials, Resistance and Chemotherapy

Abdulwasid Abubakari
Rosemary Agbeko
George Osei-Adjei
Rolf Kümmerli

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1696696

2,248 views

Original Research

Published on 06 Jan 2026

Gene and function diversity-area relationships in the inflammatory bowel disease fecal and mucosal microbiome

in Systems Microbiology

Fubing Yu
Jiyang Song
Linyi Qi
Jinghua Liu
Yintiantian Yang
Wendy Li
Lianwei Li
Zhanshan (Sam) Ma

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1660973

813 views

Original Research

Published on 06 Jan 2026

Probiotic attributes and safety profile of AKM Lab-01: a novel Akkermansia muciniphila strain combating obesity and metabolic disorders in diet-induced obese mice

in Food Microbiology

Baojia Huang
Yibo Xian
Wenbin Xue
Zilun Pu
Ping Kong
Peifen Li
Yingying Zhao
Lihong Tai
Zhipeng Chen
Zhou Lan

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1627870

1,646 views

Editorial

Published on 06 Jan 2026

Editorial: Diversity, function, and application of microbes in the fermentation or production of traditional food

in Food Microbiology

Weiwei Dong
Shenxi Chen
Yuanliang Hu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1751159

806 views

Original Research

Published on 06 Jan 2026

Diversity analysis of endohyphal bacteria in oil-producing fungi inhabiting arid environments

in Microbial Symbioses

Yanxia Liang
Yulian Feng
Qiong Jia
Jing Zhu
Shengting Guo
Qiyong Tang
Yonghong Fan
Zhidong Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1712713

843 views