Frontiers in Microbiology

Original Research

Published on 08 Dec 2025

Artificial grassland establishment alters soil organic carbon fractions and cbbL-type carbon-sequestering microbial communities

in Terrestrial Microbiology

Linge Shan
Aasitaiken Julihaiti
Wenhao Wang
Die Lu
Yi Hu
Baolong Zhao
Yake He
Xiangkang Meng
Helong Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1726039

1,135 views

Original Research

Published on 08 Dec 2025

Synthetic microbiota for microplastic degradation modulates rhizosphere fungal diversity and metabolic function in highland barley

in Terrestrial Microbiology

Yue Deng
Peng Xiang
Mei Zhang
Shouqin Wang
Xudong Zhou
Jincheng Liu
Qiang Li
Guiqiang He

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1711544

1,445 views

Original Research

Published on 08 Dec 2025

Seawater intrusion regulates microbial community structure and functional potential in subterranean estuaries of the Yangtze River

in Aquatic Microbiology

Yunduo Zhao
Dongsheng Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1724949

1,354 views
1 citation

Original Research

Published on 08 Dec 2025

Diversity and community assembly mechanisms of soil methanotrophs in typical ecotypes of the Mitika alpine wetland in northern Xizang

in Microbiological Chemistry and Geomicrobiology

Pengxi Cao
Yuyan Wang
Zhe Wang
Liang Cao
Hairong Li
Hongmei Ma
Qiong La

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1731213

967 views

Original Research

Published on 08 Dec 2025

Spatial microbiome-metabolic crosstalk drives CD8+ T-cell exhaustion through the butyrate-HDAC axis in colorectal cancer

in Systems Microbiology

Xiaoyang Chen
Yinxu Zhang
Guangyu Zhang
Dai Wang
Linhua Dou
Yuxi Wang
Zining Huang
Xiaomei Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1704491

1,934 views

Original Research

Published on 05 Dec 2025

Effects of total abdominal irradiation on gut microbiota and metabolome during acute tissue injury

in Microorganisms in Vertebrate Digestive Systems

Lina Lu
Qingyu Huang
Chao Sun
Shuhe Kang
Pen Jin
Xin Wang
Xingping Luo
Jia Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1702694

1,913 views

Original Research

Published on 05 Dec 2025

Antimicrobial resistance and genomic characterization of Staphylococcus aureus in ready-to-eat foods from Mangaung Metro Municipality

in Food Microbiology

Pontso Letuka
Sebolelo J. Nkhebenyane
Tsepo Ramatla
Tywabi-Ngeva Zikhona
Kgaugelo E. Lekota
Ntelekwane G. Khasapane

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1669035

1,903 views

Editorial

Published on 05 Dec 2025

Editorial: Impacts of metal and xenobiotic-induced stress on antibiotic resistance in microbial communities

in Antimicrobials, Resistance and Chemotherapy

Rojana Sukchawalit
Agata Goryluk-Salmonowicz
Jon L. Hobman
Magdalena Popowska

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1745065

1,308 views

Original Research

Published on 05 Dec 2025

Host sweet preference modulates the salivary microbiome and its divergent associations with plaque-associated and non-plaque-related oral diseases

in Microbial Symbioses

Zhenzhen Li
Xiao Peng
Qi Wang
Liangying Guo
Shanshan Liu
Li Xu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1732083

1,377 views

Original Research

Published on 05 Dec 2025

Experimental and field comparisons of two common methods for measuring microzooplankton grazing rates

in Aquatic Microbiology

Jennifer L. Beatty
Brittany P. Stewart
Kendra A. Turk-Kubo
Debbie Lindell
David A. Caron

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1706193

1,694 views

Mini Review

Published on 05 Dec 2025

Microbiome-targeted Alzheimer’s interventions via gut-brain axis

in Microbial Symbioses

Ruiqi Qin
Chaofan Li
Xingxing Yuan
Yinghua Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1729708

2,770 views

Perspective

Published on 05 Dec 2025

Generative AI in microbial evolution and resistance: toward robust, explainable, and equitable predictions

in Systems Microbiology

Fahim Sufi

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1705320

1,993 views

Original Research

Published on 05 Dec 2025

The metabolite ILA of Akkermansia muciniphila improves AP-related intestinal injury by targeting and inhibiting CASP3 activity

in Microbial Physiology and Metabolism

Peiyu Li
Jiuliang Yu
Tao Li
Xiaoyong Gong
Le Li
Yi Cui
Jiayi He
Bo Li
Shuqi Wu
Qingyang Guan

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1669383

1,812 views

Original Research

Published on 05 Dec 2025

Fertilization influences the substrate, rhizosphere, and endosphere bacteriome of Petunia × hybrida

in Microbe and Virus Interactions with Plants

Juan Quijia-Pillajo
Laura J. Chapin
James S. Owen
James E. Altland
Michelle L. Jones

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1719754

1,878 views

Review

Published on 05 Dec 2025

The molecular interplay between the gut microbiome and circadian rhythms: an integrated review

in Microorganisms in Vertebrate Digestive Systems

Boyang Zheng
Liwei Wang
Shilin Sun
Xingxing Yuan
Qun Liang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1712516

3,182 views

Original Research

Published on 05 Dec 2025

Bio-organic fertilizers reshape rhizosphere bacterial community and enhance crop productivity in reclaimed soil

in Microbe and Virus Interactions with Plants

Jing Yang
Xiaomin Lu
Bing Hao
Shimei Wang
Lijuan Kong
Qingqin Shao
Weiping Li
Xingyu Wang
Youzun Xu
Wenge Wu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1713125

1,795 views

Original Research

Published on 04 Dec 2025

Multicenter epidemiology of Stenotrophomonas maltophilia bloodstream infections in Indian ICUs: building digital surveillance network

in Infectious Agents and Disease

Parul Singh
M. Nizam Ahmed
Ashish Kumar Srivastava
Arpan Kumar Thakur
Rasna Parveen
Mamta Puraswani
Subodh Kumar
Sushma Sagar
Kapil Dev Soni
Richa Aggarwal

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1725629

2,469 views

Original Research

Published on 04 Dec 2025

Metabolomic analysis of Streptococcus pneumoniae: uncovering key metabolic pathways

in Infectious Agents and Disease

Haiyan Jiang
Changliang Zhao
Lu Feng
YuJun Gao
Zhihui Mi
Haiying He

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1707940

1,824 views

Opinion

Published on 04 Dec 2025

From miscommunication to misinformation: Streptomyces species erroneously reported as producers of prodigiosin

in Antimicrobials, Resistance and Chemotherapy

M. Kalim Akhtar

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1693024

1,003 views

Original Research

Published on 04 Dec 2025

Pre-release environmental acclimation enhances wild adaptability of endangered Kaluga sturgeon (Huso dauricus): insights from digestive, immune, and gut-microbiome perspectives

in Microorganisms in Vertebrate Digestive Systems

Cunhua Zhai
Wentao Sun
Yutao Li
Haoxiang Han
Ying Zhang
Bo Ma

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1720688

1,309 views

Correction

Published on 04 Dec 2025

Correction: Spatial pattern and environmental determinants of benthic diatom diversity in the middle and lower reaches of the Yellow River

in Aquatic Microbiology

Qingyang Guo
Qin Zhu
Pengfei Peng
Qiuling Zhou
Yong Ding
Zhenchang Zhu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1744178

1,070 views
1 citation

Original Research

Published on 04 Dec 2025

Neonatal gut microbiota stratification and identification of SCFA-associated microbial subgroups using unsupervised clustering and machine learning classification

in Microorganisms in Vertebrate Digestive Systems

Payam Hosseinzadeh Kasani
Cheol-Heui Yun
Kee Hyun Cho
Su Jin Jeong

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1668451

1,950 views

Original Research

Published on 04 Dec 2025

The bacterial species’ degradation activities at maximum threshold doses of glyphosate across different pH levels and temperature glyphosate biodegradation by soil bacteria at high doses under variable pH and temperature

in Microbiotechnology

Tinatin Doolotkeldieva
Saykal Bobusheva
Mahabat Konurbaeva

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1668968

2,179 views

Original Research

Published on 04 Dec 2025

Dietary fibre supplementation in late gestation modulates gut microbiota and improves reproductive performance and colostrum quality in sows

in Food Microbiology

Guanglei Cong
Chunxue Liu
Shuangshuang Xia
Junbo Li
Ifen Hung

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1667697

1,808 views

39,441 articles

articles

Artificial grassland establishment alters soil organic carbon fractions and cbbL-type carbon-sequestering microbial communities

Synthetic microbiota for microplastic degradation modulates rhizosphere fungal diversity and metabolic function in highland barley

Seawater intrusion regulates microbial community structure and functional potential in subterranean estuaries of the Yangtze River

Diversity and community assembly mechanisms of soil methanotrophs in typical ecotypes of the Mitika alpine wetland in northern Xizang

Spatial microbiome-metabolic crosstalk drives CD8+ T-cell exhaustion through the butyrate-HDAC axis in colorectal cancer

Effects of total abdominal irradiation on gut microbiota and metabolome during acute tissue injury

Antimicrobial resistance and genomic characterization of Staphylococcus aureus in ready-to-eat foods from Mangaung Metro Municipality

Editorial: Impacts of metal and xenobiotic-induced stress on antibiotic resistance in microbial communities

Host sweet preference modulates the salivary microbiome and its divergent associations with plaque-associated and non-plaque-related oral diseases

Experimental and field comparisons of two common methods for measuring microzooplankton grazing rates

Microbiome-targeted Alzheimer’s interventions via gut-brain axis

Generative AI in microbial evolution and resistance: toward robust, explainable, and equitable predictions

The metabolite ILA of Akkermansia muciniphila improves AP-related intestinal injury by targeting and inhibiting CASP3 activity

Fertilization influences the substrate, rhizosphere, and endosphere bacteriome of Petunia × hybrida

The molecular interplay between the gut microbiome and circadian rhythms: an integrated review

Bio-organic fertilizers reshape rhizosphere bacterial community and enhance crop productivity in reclaimed soil

Multicenter epidemiology of Stenotrophomonas maltophilia bloodstream infections in Indian ICUs: building digital surveillance network

Metabolomic analysis of Streptococcus pneumoniae: uncovering key metabolic pathways

From miscommunication to misinformation: Streptomyces species erroneously reported as producers of prodigiosin

Pre-release environmental acclimation enhances wild adaptability of endangered Kaluga sturgeon (Huso dauricus): insights from digestive, immune, and gut-microbiome perspectives

Correction: Spatial pattern and environmental determinants of benthic diatom diversity in the middle and lower reaches of the Yellow River

Neonatal gut microbiota stratification and identification of SCFA-associated microbial subgroups using unsupervised clustering and machine learning classification

The bacterial species’ degradation activities at maximum threshold doses of glyphosate across different pH levels and temperature glyphosate biodegradation by soil bacteria at high doses under variable pH and temperature

Dietary fibre supplementation in late gestation modulates gut microbiota and improves reproductive performance and colostrum quality in sows