Frontiers in Microbiology

Original Research

Published on 03 Sep 2025

Multi-omics analysis of gut microbiota and metabolites reveals the effects of rearing systems on the duodenum and cecum gut barriers of lueyang black-bone chickens

in Microorganisms in Vertebrate Digestive Systems

Linqing Shao
Mingming Zhao
Shuang Zeng
Ling Wang
Shanshan Wang
Wenxian Zeng
Hongzhao Lu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1642169

2,116 views

Original Research

Published on 03 Sep 2025

Geographic patterns of antibiotic resistance in the human gut microbiome: insights from metagenome-assembled genomes across four Chinese provinces

in Microbial Symbioses

Shili Zhou
Huan Liu
Xue Bai
Diyan Li
Tao Wang
Hang Zhong
Wenxia Gao
Jing Sun

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1652757

3,604 views
1 citation

Original Research

Published on 03 Sep 2025

Exploring the potential of zinc-solubilizing Bacillus strains to enhance rice (Oryza sativa L.) productivity in nutrient-deficit soils

in Microbiological Chemistry and Geomicrobiology

Maqshoof Ahmad
Iqra Naseer
Farheen Nazli
Abubakar Dar
Rubab Sarfraz
Usman Zulfiqar
Hossam S. El-Beltagi
Muneera A. Saleh
Nazih Y. Rebouh
Xasanboy Rasulov

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1626216

3,376 views
1 citation

Original Research

Published on 03 Sep 2025

Functional constipation in Chinese infants: disruptions in gut microbiota and urinary metabolome revealed by a cross-sectional analysis

in Microorganisms in Vertebrate Digestive Systems

Haihong Zhao
Xiuxia Lu
Hua Lou
Yanbin Ye
Hui Ye
Weiwei Li
Ziyu Long
Xuezhi Zhang
Jieling Wu
Ji Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1649995

2,133 views

Review

Published on 03 Sep 2025

Diagnosis of nontuberculous mycobacterial infections using genomics and artificial intelligence-machine learning approaches: scope, progress and challenges

in Infectious Agents and Disease

Madhan Kumar Murthy
Vivek Kumar Gupta
Anand Prakash Maurya

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1665685

4,501 views
4 citations

Mini Review

Published on 03 Sep 2025

The role and mechanism of bacterial outer membrane vesicles in the development of periodontitis

in Microbial Symbioses

Haocheng Wang
Jiale Sun
Guoxuan Ma
Fuping You
Boon Chin Heng
Yunyang Bai
Xuliang Deng

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1654137

3,560 views
1 citation

Original Research

Published on 03 Sep 2025

Selective shaping of prokaryotic communities and core symbiont maintenance suggest large-scale aquarium facilities as reservoirs of microbiome diversity in octocorals

in Microbial Symbioses

Matilde Marques
Francisco Pascoal
Helena Villela
Elsa Santos
Núria Baylina
Raquel S. Peixoto
Tina Keller-Costa
Rodrigo Costa

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1651109

2,908 views

Original Research

Published on 03 Sep 2025

Dasatinib and Quercetin alleviate type 2 diabetic osteoporosis by regulating serum metabolite and gut microbiome

in Microorganisms in Vertebrate Digestive Systems

Junzheng Yang
Hua Zhang
Zhuoxu Gu
Guanghui Zhou
Guihong Liang
Lingfeng Zeng
Jinlong Zhao
Weiyi Yang
Jun Liu
Jianke Pan

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1631082

3,490 views
1 citation

Original Research

Published on 03 Sep 2025

Investigation of the genome, taxonomy, and distribution of pigeon gammacoronavirus: insights into its relationships with other avian gammacoronaviruses

in Virology

Sumei Tan
Xiu Wang
Qingye Zhuang
Huanyu Gong
Ruixu Chen
Jiming Chen
Dahai Liu
Ming Liao

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1647728

2,222 views

Mini Review

Published on 03 Sep 2025

Phage therapy for environmental biotechnology applications

in Phage Biology

Suniti Singh
Rachel Samson
Francis Hassard

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1621103

6,945 views
3 citations

Original Research

Published on 03 Sep 2025

Microbial niche differentiation and agronomic performance of diseased Capsicum annuum

in Microbe and Virus Interactions with Plants

Zhiqi Yang
Yankun Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1576486

2,582 views
1 citation

Original Research

Published on 03 Sep 2025

Effects of different crop rotation patterns on the growth of Guizhou sorghum and rhizosphere soil quality: implications for agricultural policy

in Terrestrial Microbiology

Manjing Chen
Jiaqi Shen
Ying Zhao
Peiyun Xie
Yingying Zhou
Yuwen Jiang
Xiaofeng Deng
Yan Ren
Mingbo Shao

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1637727

1,688 views
1 citation

Systematic Review

Published on 03 Sep 2025

Relationship between gut microbiota and osteoarthritis: a scientometric analysis

in Microorganisms in Vertebrate Digestive Systems

Zhicheng He
Songrui Xu
Ningning Ma
Yin Zuo
Xinyu Chen
Ting Yan
Pengcui Li
Yongchun Pan
Xiaochun Wei
Zhi Tian

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1608800

3,492 views

Original Research

Published on 03 Sep 2025

Ire1 inhibitors attenuate Candida albicans pathogenicity and demonstrate potential for application in antifungal therapy

in Infectious Agents and Disease

Hua Wang
Mengyan Li
Qiuyue Wang
Huihai Zhao
Mengyu Jiang
Qi Cui
Daxin Lei
Keran Jia
Fukun Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1648467

2,527 views
1 citation

Original Research

Published on 02 Sep 2025

Changes in the gut microbiome of older adults according to hypertension control

in Microorganisms in Vertebrate Digestive Systems

Fernanda Valdez-Palomares
Tomas Texis
Sergio Sánchez-García
José Darío Martínez-Ezquerro
Paola García-de la Torre
Mauricio Rodríguez-Dorantes
Alma Genis-Mendoza
Salvador Fabela
Berenice Palacios-González
Vanessa González-Covarrubias

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1605271

2,597 views

Original Research

Published on 02 Sep 2025

Protective effects of Lactobacillus rhamnosus GG supernatant on metabolic associated fatty liver disease through intestinal barrier restoration and regulation of the regenerating gene 3γ

in Food Microbiology

Si-Pu Wang
Ling Ba
Xin-Rui Lv
Ya-Xin Qi
Xu Wang
Jie Zhang
Xin Xu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1580171

2,736 views
1 citation

Original Research

Published on 02 Sep 2025

Multi-acid synergistic fermentation enhances the quality of bran feed

in Food Microbiology

Wanshu Pan
Binbin Li
Kah Hui Chong
Song Wang
Ling You
Xin Wang
Mahmud Ab Rashid Nor-Khaizura
Nor Afizah Mustapha
Nazamid Saari
Wan Zunairah Wan Ibadullah

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1646911

2,308 views

Review

Published on 02 Sep 2025

Berberine and its nanoformulations and extracts: potential strategies and future perspectives against multi-drug resistant bacterial infections

in Antimicrobials, Resistance and Chemotherapy

Xue Yang
Yanfen Wang
Ling Li
Daiyan Tang
Zhong Yan
MingYan Li
Jiayi Jiang
Dongming Bi

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1643409

5,293 views
3 citations

Review

Published on 02 Sep 2025

Beyond pathogenicity: applications of the type III secretion system (T3SS) of Pseudomonas aeruginosa

in Microbial Physiology and Metabolism

Tianqi Su
Lin Zhang
Jie Shen
Danyu Qian
Yulei Guo
Zhenpeng Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1663945

4,614 views
2 citations

Original Research

Published on 02 Sep 2025

Drug selection based on pan-genomics genetic features of Mycobacterium tuberculosis

in Antimicrobials, Resistance and Chemotherapy

Xiangcheng Sun
Panpan Xu
Yun Shi
Ning Wang
Yan Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1663069

3,261 views

Original Research

Published on 02 Sep 2025

Tobacco intercropping enhances soil fertility by improving synergic interactions between soil physicochemical and microbial properties

in Terrestrial Microbiology

Kaiyuan Gu
Xianglu Liu
Ming Liu
Xu Wei
Juan Li
Yanxia Hu
Yonglei Jiang
Yi Chen
Dexun Wang
Yanming Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1647493

2,663 views
3 citations

Original Research

Published on 02 Sep 2025

The protective effect of Blautia coccoides in secondary injury of intracerebral hemorrhage

in Microorganisms in Vertebrate Digestive Systems

Xian Shao
Matao Zheng
Chenglong Ye
Jiafeng Lu
Mengyun Li
Kuiwei Su
Hui Lin
Lingyan He
Xuchen Qi
Jianli Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1616222

2,235 views

Correction

Published on 02 Sep 2025

Correction: Beyond survival to domination: Brucella's multilayered strategies for evading host immune responses

in Infectious Agents and Disease

Zhimeng Wei
Shuai Zhang
Xingya Wang
Jie Bai
Hui Wang
Yuanchao Yang
Jingbo Zhai

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1669739

1,384 views

Original Research

Published on 02 Sep 2025

Integrated microbiome-metabolome profiling unveils a predictive signature for early recurrence in hepatocellular carcinoma

in Microorganisms in Vertebrate Digestive Systems

Qiqi Chen
Yi Wang
Daoyuan Wu
He Zhang
Qingxin Xia
Dingding Qu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1653249

2,275 views
1 citation

39,319 articles

articles

Multi-omics analysis of gut microbiota and metabolites reveals the effects of rearing systems on the duodenum and cecum gut barriers of lueyang black-bone chickens

Geographic patterns of antibiotic resistance in the human gut microbiome: insights from metagenome-assembled genomes across four Chinese provinces

Exploring the potential of zinc-solubilizing Bacillus strains to enhance rice (Oryza sativa L.) productivity in nutrient-deficit soils

Functional constipation in Chinese infants: disruptions in gut microbiota and urinary metabolome revealed by a cross-sectional analysis

Diagnosis of nontuberculous mycobacterial infections using genomics and artificial intelligence-machine learning approaches: scope, progress and challenges

The role and mechanism of bacterial outer membrane vesicles in the development of periodontitis

Selective shaping of prokaryotic communities and core symbiont maintenance suggest large-scale aquarium facilities as reservoirs of microbiome diversity in octocorals

Dasatinib and Quercetin alleviate type 2 diabetic osteoporosis by regulating serum metabolite and gut microbiome

Investigation of the genome, taxonomy, and distribution of pigeon gammacoronavirus: insights into its relationships with other avian gammacoronaviruses

Phage therapy for environmental biotechnology applications

Microbial niche differentiation and agronomic performance of diseased Capsicum annuum

Effects of different crop rotation patterns on the growth of Guizhou sorghum and rhizosphere soil quality: implications for agricultural policy

Relationship between gut microbiota and osteoarthritis: a scientometric analysis

Ire1 inhibitors attenuate Candida albicans pathogenicity and demonstrate potential for application in antifungal therapy

Changes in the gut microbiome of older adults according to hypertension control

Protective effects of Lactobacillus rhamnosus GG supernatant on metabolic associated fatty liver disease through intestinal barrier restoration and regulation of the regenerating gene 3γ

Multi-acid synergistic fermentation enhances the quality of bran feed

Berberine and its nanoformulations and extracts: potential strategies and future perspectives against multi-drug resistant bacterial infections

Beyond pathogenicity: applications of the type III secretion system (T3SS) of Pseudomonas aeruginosa

Drug selection based on pan-genomics genetic features of Mycobacterium tuberculosis

Tobacco intercropping enhances soil fertility by improving synergic interactions between soil physicochemical and microbial properties

The protective effect of Blautia coccoides in secondary injury of intracerebral hemorrhage

Correction: Beyond survival to domination: Brucella's multilayered strategies for evading host immune responses

Integrated microbiome-metabolome profiling unveils a predictive signature for early recurrence in hepatocellular carcinoma