Frontiers in Microbiology | Microbe and Virus Interactions with Plants

Original Research

Published on 18 Sep 2025

In-depth comparison of commercial Trichoderma-based products: integrative approaches to quantitative analysis, taxonomy and efficacy

in Microbe and Virus Interactions with Plants

Tomasz Kulik
Paulina Staniszewska
Patryk Wiśniewski
Zofia Treder
Maciej Przybylski
Ewa Wrońska
Mateusz Maździarz
Katarzyna Krawczyk
Katarzyna Bilska
Łukasz Paukszto

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1646394

3,733 views
3 citations

Original Research

Published on 17 Sep 2025

Isolation and growth-promoting mechanisms of phosphate-solubilizing bacteria from Qinghai-Tibet Plateau in Lespedeza bicolor Turcz

in Microbe and Virus Interactions with Plants

Xinru Zhang
Wenjia Liu
Jiayi Liu
Xiaoli Mei
Jinghua Zhang
Dong Wang
Xiaoxia Zhang
Jiayao Zhuang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1669774

2,379 views

Original Research

Published on 16 Sep 2025

Seed transmission of Carlavirus vignae (Cowpea mild mottle virus): a hidden driver of veinal necrosis and bud blight disease in soybean (Glycine max) in India

in Microbe and Virus Interactions with Plants

Dhruva Nitin Bhagwatkar
Nagamani Sandra
Ankita Tripathi
Garima Dalal
Sharankumar Kesaratagi
Manisha Saini
Sandeep Kumar Lal
Sanjay Kumar Lal

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1654471

2,664 views
1 citation

Original Research

Published on 16 Sep 2025

Spatiotemporal analysis of the structure and genetic diversity of Stemphylium vesicarium populations in New York onion fields

in Microbe and Virus Interactions with Plants

Aastha Subedi
Daniel W. Heck
Frank Hay
Natalia Piñeros-Guerrero
Sarah J. Pethybridge

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1666712

2,674 views
1 citation

Original Research

Published on 15 Sep 2025

Multi-omics analysis reveals the alleviating effect of oxidation remediation on tobacco quinclorac stress

in Microbe and Virus Interactions with Plants

Binghui Zhang
Ting Yang
Chenliang Cheng
Tong Li
Ni Zhang
Fei Wang
Wencan Chen
Zhiping Zhong
Zhaoxiang Liu
Gang Gu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1625585

2,556 views

Original Research

Published on 12 Sep 2025

Seasonal and regional structuring of rhizosphere fungal communities in Macadamia integrifolia

in Microbe and Virus Interactions with Plants

Ya Ning
Yuchun Chen
Zhonghua Wu
Tingmei Yang
Xiyong He
Hai Yue

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1634222

2,208 views
1 citation

Original Research

Published on 10 Sep 2025

Continuous watermelon cropping impairs plant growth by modifying soil biochemistry and rhizosphere microbial communities

in Microbe and Virus Interactions with Plants

HuiFang Lv
Rui Sang
LingLing Huang
YueChen Long
DeCong Xu
MingXia Wang
QiAn Zhang
Li Jia
QiangQiang Ding
CongSheng Yan

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1648481

2,716 views

Original Research

Published on 09 Sep 2025

Comprehensive genomic and functional characterization of a phytoplasma associated with root retardation, early bolting, witches’-broom, and phyllody in daikon (Raphanus sativus L.)

in Microbe and Virus Interactions with Plants

Yi-Ching Chiu
Yu-Chen Lin
Shang-Hung Pao
Yuh-Kun Chen
Pei-Qing Liao
Helen Mae Mejia
Chiou-Rong Sheue
Chih-Horng Kuo
Jun-Yi Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1654928

2,911 views
1 citation

Original Research

Published on 09 Sep 2025

Understanding the impact of soil microbiome on strawberry growth and nutritional profiles

in Microbe and Virus Interactions with Plants

Min-Jin Kwak
Sriniwas Pandey
Yuting Zhai
Bugil Choi
Thanyachanok Sutthanonkul
Won Suk Lee
Kwangcheol C. Jeong

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1654776

2,559 views

Original Research

Published on 04 Sep 2025

Integrated metabarcoding and culture-dependent assessments reveal Pseudomonas as dominant hyphosphere-pathobiont in Race 4 Fusarium wilt pathogen of cotton

in Microbe and Virus Interactions with Plants

Sanjay Antony-Babu
Gayan Abeysinghe
Vanessa Elizabeth Thomas
Cara Hockenbury
Shravan Sharma Parunandi
Amrita Dasgupta
Tristan Andrew Gregory
Amrita Sai Gabu
Haden Ball
Thomas M. Chappell

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1661556

3,346 views
1 citation

Original Research

Published on 03 Sep 2025

Microbial niche differentiation and agronomic performance of diseased Capsicum annuum

in Microbe and Virus Interactions with Plants

Zhiqi Yang
Yankun Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1576486

2,686 views
1 citation

Original Research

Published on 01 Sep 2025

Analysis of the community composition and diversity of endophytes in extremely spicy industrial chili peppers from Tibet using high-throughput sequencing

in Microbe and Virus Interactions with Plants

Junze Zhang
Yebing Yin
Yanying Wang
Sicen Luo
Yu Li
Wenxiang Zhao
Pengxi Cao
Yixuan Liu
Hongmei Ma

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1630090

2,146 views
1 citation

Original Research

Published on 29 Aug 2025

Broad antibiosis activity of Bacillus velezensis and Bacillus subtilis is accounted for by a conserved capacity for lipopeptide biosynthesis

in Microbe and Virus Interactions with Plants

Jahangir Alam
Oluwakemisola E. Olofintila
Francesco S. Moen
Zachary A. Noel
Mark R. Liles
Douglas C. Goodwin

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1636481

4,159 views
2 citations

Original Research

Published on 29 Aug 2025

Genomic and phenotypic profiling of an Artemisia endophyte: dual biostimulant and biocontrol activities in pea under Fusarium stress

in Microbe and Virus Interactions with Plants

Shervin Hadian
Donald L. Smith
Skaidre Suproniene

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1643204

2,613 views
1 citation

Review

Published on 26 Aug 2025

Rhizobia and non-rhizobial nodule bacteria with ACC deaminase increase both nodulation and stress resistance

in Microbe and Virus Interactions with Plants

Elisa Gamalero
Bernard R. Glick

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1662592

3,004 views
3 citations

Original Research

Published on 26 Aug 2025

Biocontrol potential of newly isolated Streptomyces noursei D337-11 from disease suppressive soil and its metabolites against Fusarium oxysporum f. sp. cubense in banana plants

in Microbe and Virus Interactions with Plants

Dengbo Zhou
Xinxin He
Yufeng Chen
Chunting Li
Wei Wang
Zhiqiang Pan
Yankun Zhao
Yongzan Wei
Junting Feng
Miaoyi Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1655103

2,921 views

Original Research

Published on 26 Aug 2025

Aspergillus Niger 129B promotes plant growth by inducing the interaction between SAUR32 and PP2C72

in Microbe and Virus Interactions with Plants

Juan He
Li Yuan Gao
Yong Ping Luo
Min Chai
Hua Feng Wang
Lu Hong Yang
Kang Zhao
Yushanjiang Maimaiti
Yuan Jun Nie
Wei Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1637235

2,380 views

Original Research

Published on 25 Aug 2025

siRNA-Silencing of swnR gene greatly reduced biosynthesis of swainsonine in Alternaria oxytropis without affecting the growth characteristics of leguminous host

in Microbe and Virus Interactions with Plants

Yu Zhang
Liwen Yang
Yange Li
Shiyu Tang
Yiqingqing Zhang
Pinzhi Sun
Hao Lu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1641192

1,703 views
1 citation

Original Research

Published on 21 Aug 2025

Ecological effects of B. subtilis C3 in kiwifruit rhizosphere soil and its prevention and control against root rot disease

in Microbe and Virus Interactions with Plants

Xu Guoyi
Song Xiaolong
Ku Yongli
Tian Yuan
Li Ming
Cao Cuiling
Yu Huili
Si Peng

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1623463

2,281 views

Original Research

Published on 18 Aug 2025

Decoding sugarcane smut: the role of effector SsEF83 in fungal virulence and plant interaction

in Microbe and Virus Interactions with Plants

Xuecheng Huang
Zongling Liu
Yizu Su
Jinfeng Qiu
Haoming Wu
Zhenhua Ming
Ru Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1586720

2,890 views

Original Research

Published on 15 Aug 2025

The plant growth-promoting Burkholderia vietnamiensis produces acyl-homoserine lactones and modulates the quorum-sensing signaling in the rhizosphere

in Microbe and Virus Interactions with Plants

Selvaraj Poonguzhali
Kiyoon Kim
Munusamy Madhaiyan
Tongmin Sa

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1638793

3,370 views
4 citations

Original Research

Accepted on 14 Aug 2025

Responses of microbial colonies, rice growth, and yield formation to salt stress under different substrate conditions

in Microbe and Virus Interactions with Plants

Hang Zhou
Dianfeng Zheng
Naijie Feng

Frontiers in Microbiology

387 views

Original Research

Published on 14 Aug 2025

Indirect improvement of pepino (Solanum muricatum) productivity via nitrogen fertilizer-mediated microbial and enzymatic stimulation

in Microbe and Virus Interactions with Plants

Bingbing Su
Huaidi Pei
Shiweng Li
Zhongming Ma
Yuliang Chen
Yubin Li
Liguang Wang
Minmin Zhang
Zhongwang Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1612012

2,137 views

Original Research

Published on 12 Aug 2025

Nitrogen fertilizer improves Salix matsudana growth and soil qualities

in Microbe and Virus Interactions with Plants

Qian Wang
Xiaoyun Niu
Shuo Huang
Dongliu Di
Beibei Su
Yangchen Yuan
Yumeng Wu
Dazhuang Huang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1631852

3,229 views
1 citation

1,815 articles

articles

In-depth comparison of commercial Trichoderma-based products: integrative approaches to quantitative analysis, taxonomy and efficacy

Isolation and growth-promoting mechanisms of phosphate-solubilizing bacteria from Qinghai-Tibet Plateau in Lespedeza bicolor Turcz

Seed transmission of Carlavirus vignae (Cowpea mild mottle virus): a hidden driver of veinal necrosis and bud blight disease in soybean (Glycine max) in India

Spatiotemporal analysis of the structure and genetic diversity of Stemphylium vesicarium populations in New York onion fields

Multi-omics analysis reveals the alleviating effect of oxidation remediation on tobacco quinclorac stress

Seasonal and regional structuring of rhizosphere fungal communities in Macadamia integrifolia

Continuous watermelon cropping impairs plant growth by modifying soil biochemistry and rhizosphere microbial communities

Comprehensive genomic and functional characterization of a phytoplasma associated with root retardation, early bolting, witches’-broom, and phyllody in daikon (Raphanus sativus L.)

Understanding the impact of soil microbiome on strawberry growth and nutritional profiles

Integrated metabarcoding and culture-dependent assessments reveal Pseudomonas as dominant hyphosphere-pathobiont in Race 4 Fusarium wilt pathogen of cotton

Microbial niche differentiation and agronomic performance of diseased Capsicum annuum

Analysis of the community composition and diversity of endophytes in extremely spicy industrial chili peppers from Tibet using high-throughput sequencing

Broad antibiosis activity of Bacillus velezensis and Bacillus subtilis is accounted for by a conserved capacity for lipopeptide biosynthesis

Genomic and phenotypic profiling of an Artemisia endophyte: dual biostimulant and biocontrol activities in pea under Fusarium stress

Rhizobia and non-rhizobial nodule bacteria with ACC deaminase increase both nodulation and stress resistance

Biocontrol potential of newly isolated Streptomyces noursei D337-11 from disease suppressive soil and its metabolites against Fusarium oxysporum f. sp. cubense in banana plants

Aspergillus Niger 129B promotes plant growth by inducing the interaction between SAUR32 and PP2C72

siRNA-Silencing of swnR gene greatly reduced biosynthesis of swainsonine in Alternaria oxytropis without affecting the growth characteristics of leguminous host

Ecological effects of B. subtilis C3 in kiwifruit rhizosphere soil and its prevention and control against root rot disease

Decoding sugarcane smut: the role of effector SsEF83 in fungal virulence and plant interaction

The plant growth-promoting Burkholderia vietnamiensis produces acyl-homoserine lactones and modulates the quorum-sensing signaling in the rhizosphere

Responses of microbial colonies, rice growth, and yield formation to salt stress under different substrate conditions

Indirect improvement of pepino (Solanum muricatum) productivity via nitrogen fertilizer-mediated microbial and enzymatic stimulation

Nitrogen fertilizer improves Salix matsudana growth and soil qualities