Frontiers in Microbiology | Microbial Physiology and Metabolism

Review

Published on 27 Oct 2025

Stereospecific lactylation in bacteriology: L/D-lactate partitioning shapes host metabolic-disease axis

in Microbial Physiology and Metabolism

Sirui Wang
Leiliang Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1693700

2,517 views

Original Research

Published on 23 Oct 2025

Acetylation of the histone-like protein HBsu at specific sites alters gene expression during sporulation in Bacillus subtilis

in Microbial Physiology and Metabolism

Liya Popova
Hritisha Pandey
Olivia R. Schreiber
Charalampos Papachristou
Valerie J. Carabetta

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1629989

1,754 views

Original Research

Published on 22 Oct 2025

Prevalence, sequence diversity, and amplification of an IS-associated enterotoxin gene, astA, in Escherichia coli

in Microbial Physiology and Metabolism

Tadasuke Ooka
Sakura Arai
Kenichi Lee
Yasuhiro Gotoh
Akiko Kubomura
Naoko Imuta
Yukiko Hara-Kudo
Sunao Iyoda
Tetsuya Hayashi
Junichiro Nishi

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1635769

1,912 views
1 citation

Original Research

Published on 20 Oct 2025

Integrated morphological, proteomic and metabolomic analyses reveal response mechanisms of microalgae under uranium exposure

in Microbial Physiology and Metabolism

Mengwei Han
Xu Yang
Bin Dong
Jinlong Lai
Hailing Xi
Sanping Zhao

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1679056

1,945 views
1 citation

Original Research

Published on 17 Oct 2025

Mfd deficiency decreases the abundance of complete transcripts of sporulation genes and alters sporogenesis and the structure of dormant Bacillus subtilis spores

in Microbial Physiology and Metabolism

Holly Anne Martin
Robert Heron
Hilda Leyva-Sanchez
Ryan King Perez
Amber Callaway
Tatiana Ermi
Aude Picard
Jessica Grifaldo
Jesse L. Barnes
Mario Pedraza-Reyes

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1680580

2,450 views

Original Research

Published on 15 Oct 2025

Proteomic analyses of the regulatory mechanisms underlying Pochonia chlamydosporia infection in Parascaris equorum eggs

in Microbial Physiology and Metabolism

Yuan Ma
Jinbao Lv
Luyao Hao
Zhengyi Li
Chengyu Ma
Rui Wang
Lili Jiang
Zhaobin Fan

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1644912

2,633 views
1 citation

Review

Published on 13 Oct 2025

From mechanisms to precision medicine: the role of organoids in studying the gut microbiota-tumor microenvironment axis

in Microbial Physiology and Metabolism

Si-yang Zheng
You-yu Su
Fu-liang Cai
Da-fang Xu
Yong-qiang Xu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1669482

3,084 views
2 citations

Original Research

Published on 10 Oct 2025

Whole genome sequence of Penicillium kloeckeri and insight into its growth-promoting, saline alkaline tolerance properties

in Microbial Physiology and Metabolism

Wenxiao Cui
Yafen Wu
Bin Ni
Jia Cao

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1675497

3,190 views

Original Research

Published on 29 Sep 2025

Transcriptomic and metabolomic analysis of a non-cyp51A mutant azole-resistant Aspergillus fumigatus isolated from Ningxia, China

in Microbial Physiology and Metabolism

Wanting Ma
Yuting Kang
Qiujie Li
Pengtao Wang
Wei Jia

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1666905

3,754 views

Original Research

Published on 26 Sep 2025

Bacillus amyloliquefaciens G02 enhances selenium uptake in lettuce (Lactuca sativa) by improving soil selenium availability and rhizosphere microbiome regulation

in Microbial Physiology and Metabolism

Bingzhi Huang
Bei Li
Guofei Pan
Danni Huang
Guoming Yang
Yanmin Ma
Fengshuo Ya
Mingliang Rao
Yanyan Wei

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1656037

3,178 views

Original Research

Published on 24 Sep 2025

GerAB residues predicted to interfere with water passage based on steered molecular dynamics are key to germinosome functionality

in Microbial Physiology and Metabolism

Longjiao Chen
Houdijn Beekhuis
Christina van den Bosch
Gianni Vinay
George Korza
Jocelyne Vreede
Peter Setlow
Stanley Brul

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1656964

3,696 views
1 citation

Original Research

Published on 24 Sep 2025

Fermentation-driven microbial and metabolic shifts in filler tobacco leaves of different grades

in Microbial Physiology and Metabolism

Chen He
Shaoxin Yang
Shengnan Dong
Shengxiao Wang
Pengfei Zhang
Yang Yang
Delong Xu
Rongchao Yang
Bo Zeng
Yanqi Hu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1651289

3,431 views
1 citation

Original Research

Published on 19 Sep 2025

Anaerobic gut fungi as biocatalysts: metabolic and physiological analysis of anaerobic gut fungi under diverse cultivation conditions

in Microbial Physiology and Metabolism

Kevin Edward Schulz
Dominik Scholz
Anto Rafael Sikirić
Daniela Rambow
Anke Neumann
Katrin Ochsenreither

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1662047

3,988 views

Original Research

Published on 16 Sep 2025

Coordinated regulation of propionyl-CoA carboxylase subunits drives precursor flux optimization in spinosad production

in Microbial Physiology and Metabolism

Ziyuan Xia
Xiaomin Li
Xirong Liu
Li Cao
Duo Jin
Zirui Dai
Baolong Bai
Qian Liu
Jie Rang
Zirong Zhu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1643527

2,993 views

Original Research

Published on 16 Sep 2025

The effect of cCMP and cUMP on growth of Pseudomonas aeruginosa

in Microbial Physiology and Metabolism

Christoph Risser
Justin Rothschuh
Heike Bähre
Detlef Neumann
Roland Seifert
Bastian Schirmer

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1675794

3,604 views

Review

Published on 02 Sep 2025

Beyond pathogenicity: applications of the type III secretion system (T3SS) of Pseudomonas aeruginosa

in Microbial Physiology and Metabolism

Tianqi Su
Lin Zhang
Jie Shen
Danyu Qian
Yulei Guo
Zhenpeng Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1663945

4,770 views
2 citations

Correction

Published on 01 Sep 2025

Correction: Evaluation of protein extraction methodologies on bacterial proteomic profiling: a comparative analysis

in Microbial Physiology and Metabolism

Hongning Jiang
Aiyun Han
Yangdong Zhang
Yanxin Li
Chao Jiang
Qijing Du
Rongbo Fan
Yongxin Yang
Rongwei Han

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1673697

1,551 views

Original Research

Published on 01 Sep 2025

Impairment in global protein synthesis uncouples UPR gene induction from HAC1 mRNA splicing in Saccharomyces cerevisiae

in Microbial Physiology and Metabolism

Ralph Allen Capistrano Geronimo
Yuki Ishiwata-Kimata
Yutaka Funahashi
Shingo Izawa
Yukio Kimata

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1629132

2,698 views
1 citation

Original Research

Published on 29 Aug 2025

Combined transcriptome and metabolome analysis reveals the regulatory network of histidine kinase QseC in the two-component system of Glaesserella parasuis

in Microbial Physiology and Metabolism

Xuefeng Yan
Yuhong Zhou
Songwei Liu
Congwei Gu
Wudian Xiao
Mingde Zhao
Zehui Yu
Lvqin He

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1637383

1,716 views
1 citation

Original Research

Published on 29 Aug 2025

From indigenous screening to pilot fermentation: comprehensive characterization of Bacillus subtilis YZ01 as a novel food-grade probiotic candidate

in Microbial Physiology and Metabolism

Xiaoyu Cao
Yu Zhang
Qianqian Xu
Hai Yan

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1624208

3,441 views
1 citation

Original Research

Published on 29 Aug 2025

cAMP-CRP-activated E. coli causes growth arrest under stress conditions

in Microbial Physiology and Metabolism

Most Farzana Haque
Takefusa Tarusawa
Chisato Ushida
Shion Ito
Hyouta Himeno

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1597530

2,775 views
2 citations

Original Research

Published on 25 Aug 2025

Phosphite inhibits Phytophthora cinnamomi by downregulating oxidoreductases and disrupting energy metabolism

in Microbial Physiology and Metabolism

S. Ashok Prabhu
Previn Naicker
Tuan A. Duong
Ireshyn Selvan Govender
Juanita Engelbrecht
Robert Backer
Stoyan Hristov Stoychev
Noëlani van den Berg

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1632726

3,247 views

Original Research

Published on 22 Aug 2025

Gene expression dynamics in Bacillus cereus and Bacillus subtilis treated with Thymus vulgaris and Origanum vulgare subsp. hirtum essential oils

in Microbial Physiology and Metabolism

Fabrizio Anniballi
Chiara Purgatorio
Annalisa Serio
Concetta Scalfaro
Silvia Taglieri
Antonello Paparella

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1643608

2,604 views

Original Research

Published on 20 Aug 2025

Multi-omics investigation reveals unique markers in Klebsiella pneumoniae compared to closely related species

in Microbial Physiology and Metabolism

Lena-Sophie Swiatek
Kristin Surmann
Elias Eger
Justus U. Müller
Manuela Gesell Salazar
Stefan E. Heiden
Guido Werner
Nils-Olaf Hübner
Jürgen A. Bohnert
Karsten Becker

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1657680

4,444 views
1 citation

2,824 articles

articles

Stereospecific lactylation in bacteriology: L/D-lactate partitioning shapes host metabolic-disease axis

Acetylation of the histone-like protein HBsu at specific sites alters gene expression during sporulation in Bacillus subtilis

Prevalence, sequence diversity, and amplification of an IS-associated enterotoxin gene, astA, in Escherichia coli

Integrated morphological, proteomic and metabolomic analyses reveal response mechanisms of microalgae under uranium exposure

Mfd deficiency decreases the abundance of complete transcripts of sporulation genes and alters sporogenesis and the structure of dormant Bacillus subtilis spores

Proteomic analyses of the regulatory mechanisms underlying Pochonia chlamydosporia infection in Parascaris equorum eggs

From mechanisms to precision medicine: the role of organoids in studying the gut microbiota-tumor microenvironment axis

Whole genome sequence of Penicillium kloeckeri and insight into its growth-promoting, saline alkaline tolerance properties

Transcriptomic and metabolomic analysis of a non-cyp51A mutant azole-resistant Aspergillus fumigatus isolated from Ningxia, China

Bacillus amyloliquefaciens G02 enhances selenium uptake in lettuce (Lactuca sativa) by improving soil selenium availability and rhizosphere microbiome regulation

GerAB residues predicted to interfere with water passage based on steered molecular dynamics are key to germinosome functionality

Fermentation-driven microbial and metabolic shifts in filler tobacco leaves of different grades

Anaerobic gut fungi as biocatalysts: metabolic and physiological analysis of anaerobic gut fungi under diverse cultivation conditions

Coordinated regulation of propionyl-CoA carboxylase subunits drives precursor flux optimization in spinosad production

The effect of cCMP and cUMP on growth of Pseudomonas aeruginosa

Beyond pathogenicity: applications of the type III secretion system (T3SS) of Pseudomonas aeruginosa

Correction: Evaluation of protein extraction methodologies on bacterial proteomic profiling: a comparative analysis

Impairment in global protein synthesis uncouples UPR gene induction from HAC1 mRNA splicing in Saccharomyces cerevisiae

Combined transcriptome and metabolome analysis reveals the regulatory network of histidine kinase QseC in the two-component system of Glaesserella parasuis

From indigenous screening to pilot fermentation: comprehensive characterization of Bacillus subtilis YZ01 as a novel food-grade probiotic candidate

cAMP-CRP-activated E. coli causes growth arrest under stress conditions

Phosphite inhibits Phytophthora cinnamomi by downregulating oxidoreductases and disrupting energy metabolism

Gene expression dynamics in Bacillus cereus and Bacillus subtilis treated with Thymus vulgaris and Origanum vulgare subsp. hirtum essential oils

Multi-omics investigation reveals unique markers in Klebsiella pneumoniae compared to closely related species