Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 19 Jun 2024

Proof of concept: real-time viability and metabolic profiling of probiotics with isothermal microcalorimetry

in Systems Microbiology

Carlotta Morazzoni
Madle Sirel
Serena Allesina
Marta Veses Garcia
Kasper Kragh
Marco Pane
Katrin Beilharz

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1391688

3,543 views
7 citations

Original Research

Published on 12 Jun 2024

Specific cultivation-independent enumeration of viable cells in probiotic products using a combination of fluorescence in situ hybridization and flow cytometry

in Systems Microbiology

Laura Snaidr
Peter Mühlhahn
Claudia Beimfohr
Christian Kreuzer
Carolin Richly
Jiri Snaidr

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1410709

5,621 views
5 citations

Original Research

Published on 04 Jun 2024

Genetically supported causality between gut microbiota, immune cells, and ischemic stroke: a two-sample Mendelian randomization study

in Systems Microbiology

Han Shuai
Zi Wang
Yinggang Xiao
Yali Ge
Hua Mao
Ju Gao

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1402718

3,296 views
3 citations

Original Research

Published on 03 Jun 2024

Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study

in Systems Microbiology

Michele Magarelli
Pierfrancesco Novielli
Francesca De Filippis
Raffaele Magliulo
Pierpaolo Di Bitonto
Domenico Diacono
Roberto Bellotti
Sabina Tangaro

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1393243

2,545 views
7 citations

Original Research

Published on 30 May 2024

Genomic and functional diversity of the human-derived isolates of Faecalibacterium

in Systems Microbiology

Wenxi Li
Xiaoqian Lin
Hewei Liang
Zhinan Wu
Mengmeng Wang
Jingxi Sun
Xiaofang Li
Wenxin He
Xiaowei Gao
Tongyuan Hu

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1379500

6,293 views
11 citations

Methods

Published on 30 May 2024

A GLM-based zero-inflated generalized Poisson factor model for analyzing microbiome data

in Systems Microbiology

Jinling Chi
Jimin Ye
Ying Zhou

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1394204

3,599 views
1 citation

Original Research

Published on 30 May 2024

Identification of microbial diversity in buried ivory soil at the Sanxingdui site in Guanghan City, China, using high-throughput sequencing

in Systems Microbiology

Siyu Sun
Zhe Xu
Mengjia Ren
Sifan Li
Zhenbin Xie
Yanbing Luo
Yongqiang Tian

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1384650

2,755 views
4 citations

Systematic Review

Published on 29 May 2024

Oropharyngeal cancer and human papillomavirus: a visualization based on bibliometric analysis and topic modeling

in Systems Microbiology

Zhu Liu
Haixu Wang
Yang Xu
Hongming Wei
Yuchong Zhang
Huilei Dong

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1387679

3,085 views
1 citation

Original Research

Published on 23 May 2024

Irisin alleviated the reproductive endocrinal disorders of PCOS mice accompanied by changes in gut microbiota and metabolomic characteristics

in Systems Microbiology

Meina Yang
Hongxia Deng
Siyu Zhou
Danhua Lu
Xiaoyang Shen
Lu Huang
Yan Chen
Liangzhi Xu

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1373077

5,664 views
11 citations

Original Research

Published on 23 May 2024

LCASPMDA: a computational model for predicting potential microbe-drug associations based on learnable graph convolutional attention networks and self-paced iterative sampling ensemble

in Systems Microbiology

Zinuo Yang
Lei Wang
Xiangrui Zhang
Bin Zeng
Zhen Zhang
Xin Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1366272

1,988 views
6 citations

Opinion

Published on 20 May 2024

The invisible life

in Systems Microbiology

Francesca Guerrieri
Cédric Libert

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1401487

2,758 views

Original Research

Published on 15 May 2024

Integrated sequence and -omic features reveal novel small proteome of Mycobacterium tuberculosis

in Systems Microbiology

Priyansha Raj Sinha
Rami Balasubramanian
Shubhada R. Hegde

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1335310

4,292 views
1 citation

Original Research

Published on 10 May 2024

Bacterial–fungal interactions and response to heavy metal contamination of soil in agricultural areas

in Systems Microbiology

Jia Li
Qiwen Zheng
Jiangyun Liu
Shuwei Pei
Zhen Yang
Rentong Chen
Li Ma
Jingping Niu
Tian Tian

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1395154

4,439 views
19 citations

Original Research

Published on 03 May 2024

Immune cells mediated the causal relationship between the gut microbiota and lung cancer: a Mendelian randomization study

in Systems Microbiology

Zhiting Chen
Zhe Wang
Hao Ma
Hejing Bao
Ting Jiang
Ting Yang
Shudong Ma

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1390722

11,955 views
7 citations

Review

Published on 02 May 2024

Insights into the oral microbiota in human systemic cancers

in Systems Microbiology

Lan Su
Rui Yang
Yanan Sheng
Saif Ullah
Yuheng Zhao
Hu Shunjiayi
Zhuo Zhao
Qingjing Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1369834

4,143 views
6 citations

Original Research

Published on 24 Apr 2024

The characteristics of intratumoral microbial community reflect the development of lung adenocarcinoma

in Systems Microbiology

Yanfang Su
Shiyu Li
Die Sang
Yurong Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1353940

2,960 views
6 citations

Original Research

Published on 24 Apr 2024

Unraveling the dynamic transcriptomic changes during the dimorphic transition of Talaromyces marneffei through time-course analysis

in Systems Microbiology

Minghao Du
Changyu Tao
Xueyan Hu
Yun Zhang
Jun Kan
Juan Wang
Ence Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1369349

2,678 views
6 citations

Original Research

Published on 19 Apr 2024

Real-time PCR methods for identification and stability monitoring of Bifidobacterium longum subsp. longum UABl-14 during shelf life

in Systems Microbiology

Hanan R. Shehata
Basma Hassane
Steven G. Newmaster

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1360241

3,215 views

Original Research

Published on 17 Apr 2024

Population characteristics of pathogenic Escherichia coli in puerperal metritis of dairy cows in Ningxia region of China: a systemic taxa distribution of virulence factors and drug resistance genes

in Systems Microbiology

Shihao Wei
Baolong Ding
Guiqin Wang
Shuangyan Luo
Hongxi Zhao
Xingang Dan

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1364373

3,257 views
2 citations

Original Research

Published on 10 Apr 2024

Causal association between gut microbiomes and different types of aneurysms: a Mendelian randomization study

in Systems Microbiology

Youjia Qiu
Yucheng Hou
Xingzhou Wei
Menghan Wang
Ziqian Yin
Minjia Xie
Aojie Duan
Chao Ma
Ke Si
Zhong Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1267888

3,647 views
4 citations

Original Research

Published on 10 Apr 2024

Microbial signatures and enterotype clusters in fattening pigs: implications for nitrogen utilization efficiency

in Systems Microbiology

Naomi Sarpong
Jana Seifert
Jörn Bennewitz
Markus Rodehutscord
Amélia Camarinha-Silva

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1354537

2,971 views
6 citations

Original Research

Published on 08 Apr 2024

Causal effects of gut microbiota on the prognosis of ischemic stroke: evidence from a bidirectional two-sample Mendelian randomization study

in Systems Microbiology

Anning Zhu
Peng Li
Yuzhou Chu
Xiuxiang Wei
Jiangna Zhao
Longfei Luo
Tao Zhang
Juntao Yan

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1346371

4,040 views
4 citations

Original Research

Published on 08 Apr 2024

Effects of coated sodium butyrate on the growth performance, serum biochemistry, antioxidant capacity, intestinal morphology, and intestinal microbiota of broiler chickens

in Systems Microbiology

Jinwang Hou
Lizhi Lu
Lina Lian
Yong Tian
Tao Zeng
Yanfen Ma
Sisi Li
Li Chen
Wenwu Xu
Tiantian Gu

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1368736

3,833 views
5 citations

Original Research

Published on 08 Apr 2024

Transcriptional dynamics and regulatory function of milRNAs in Ascosphaera apis invading Apis mellifera larvae

in Systems Microbiology

Xiaoxue Fan
Xuze Gao
He Zang
Zhitan Liu
Xin Jing
Xiaoyu Liu
Sijia Guo
Haibin Jiang
Ying Wu
Zhijian Huang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1355035

2,422 views
1 citation

1,781 articles

articles

Proof of concept: real-time viability and metabolic profiling of probiotics with isothermal microcalorimetry

Specific cultivation-independent enumeration of viable cells in probiotic products using a combination of fluorescence in situ hybridization and flow cytometry

Genetically supported causality between gut microbiota, immune cells, and ischemic stroke: a two-sample Mendelian randomization study

Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study

Genomic and functional diversity of the human-derived isolates of Faecalibacterium

A GLM-based zero-inflated generalized Poisson factor model for analyzing microbiome data

Identification of microbial diversity in buried ivory soil at the Sanxingdui site in Guanghan City, China, using high-throughput sequencing

Oropharyngeal cancer and human papillomavirus: a visualization based on bibliometric analysis and topic modeling

Irisin alleviated the reproductive endocrinal disorders of PCOS mice accompanied by changes in gut microbiota and metabolomic characteristics

LCASPMDA: a computational model for predicting potential microbe-drug associations based on learnable graph convolutional attention networks and self-paced iterative sampling ensemble

The invisible life

Integrated sequence and -omic features reveal novel small proteome of Mycobacterium tuberculosis

Bacterial–fungal interactions and response to heavy metal contamination of soil in agricultural areas

Immune cells mediated the causal relationship between the gut microbiota and lung cancer: a Mendelian randomization study

Insights into the oral microbiota in human systemic cancers

The characteristics of intratumoral microbial community reflect the development of lung adenocarcinoma

Unraveling the dynamic transcriptomic changes during the dimorphic transition of Talaromyces marneffei through time-course analysis

Real-time PCR methods for identification and stability monitoring of Bifidobacterium longum subsp. longum UABl-14 during shelf life

Population characteristics of pathogenic Escherichia coli in puerperal metritis of dairy cows in Ningxia region of China: a systemic taxa distribution of virulence factors and drug resistance genes

Causal association between gut microbiomes and different types of aneurysms: a Mendelian randomization study

Microbial signatures and enterotype clusters in fattening pigs: implications for nitrogen utilization efficiency

Causal effects of gut microbiota on the prognosis of ischemic stroke: evidence from a bidirectional two-sample Mendelian randomization study

Effects of coated sodium butyrate on the growth performance, serum biochemistry, antioxidant capacity, intestinal morphology, and intestinal microbiota of broiler chickens

Transcriptional dynamics and regulatory function of milRNAs in Ascosphaera apis invading Apis mellifera larvae