Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 30 Jul 2024

MetaBakery: a Singularity implementation of bioBakery tools as a skeleton application for efficient HPC deconvolution of microbiome metagenomic sequencing data to machine learning ready information

in Systems Microbiology

Boštjan Murovec
Leon Deutsch
Damjan Osredkar
Blaž Stres

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1426465

3,583 views

Original Research

Published on 29 Jul 2024

A computational model for potential microbe–disease association detection based on improved graph convolutional networks and multi-channel autoencoders

in Systems Microbiology

Chuyi Zhang
Zhen Zhang
Feng Zhang
Bin Zeng
Xin Liu
Lei Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1435408

1,327 views
3 citations

Original Research

Published on 24 Jul 2024

A new strain of Rhodococcus indonesiensis T22.7.1T and its functional potential for deacetylation of chitin and chitooligsaccharides

in Systems Microbiology

Junjie Xie
Doudou Yin
Junchao Ou
Bo Lu
Siming Liao
Dengfeng Yang
Hongyan Zhang
Naikun Shen

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1427143

2,173 views
1 citation

Original Research

Published on 24 Jul 2024

A Mendelian randomization analysis reveals the multifaceted role of the skin microbiota in liver cancer

in Systems Microbiology

Xiaoxue Wang
Zexin Zhu

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1422132

3,210 views
2 citations

Original Research

Published on 23 Jul 2024

Oxygen regulation of microbial communities and chemical compounds in cigar tobacco curing

in Systems Microbiology

Juan Yang
Fang Xue
Dongliang Li
Jiaowen Chen
Guiyang Shi
Guangfu Song
Youran Li

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1425553

1,643 views
4 citations

Original Research

Published on 22 Jul 2024

Integrated metabolomics and transcriptomics analysis reveals the mechanism of Tangbi capsule for diabetic lower extremities arterial disease

in Systems Microbiology

Ye-hao Luo
Da-wei Wang
Jia Yao
Yue Hu
Ling Zhao
Jian-xuan Wen
Jin-ming Zhang
Lu-Lu Wu
Guan-jie Fan
Wei Song

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1423428

2,690 views

Original Research

Published on 19 Jul 2024

Benchmarking of five NGS mapping tools for the reference alignment of bacterial outer membrane vesicles-associated small RNAs

in Systems Microbiology

Bojana Banović Đeri
Sofija Nešić
Ivan Vićić
Jelena Samardžić
Dragana Nikolić

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1401985

3,320 views

Original Research

Published on 18 Jul 2024

Gut microbiota causally affects drug-induced liver injury via plasma metabolites: a Mendelian randomization study

in Systems Microbiology

Haoshuang Fu
Shuang Zhao
Shuying Song
Qing Xie

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1432049

3,165 views
2 citations

Original Research

Published on 17 Jul 2024

The effect of gut microbiome and plasma metabolome on systemic sclerosis: a bidirectional two-sample Mendelian randomization study

in Systems Microbiology

Shasha Xie
Qiming Meng
Lin Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1427195

1,902 views
1 citation

Editorial

Published on 17 Jul 2024

Editorial: Combining machine learning, computational modeling, and high throughput experimentation to accelerate discovery in systems microbiology

in Systems Microbiology

Miguel Fuentes-Cabrera
Paolo Zuliani
Bowen Li
Jared L. Wilmoth
Aivett Bilbao
Alice C. Dohnalkova

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1451243

1,261 views

Original Research

Published on 16 Jul 2024

Age-correlated changes in the canine oral microbiome

in Systems Microbiology

Gregory Kislik
Lin Zhou
Liudmilla Rubbi
Matteo Pellegrini

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1426691

2,467 views

Original Research

Published on 15 Jul 2024

Gut microbiota, plasma metabolites, and osteoporosis: unraveling links via Mendelian randomization

in Systems Microbiology

Yi Lu
Xiaobing Cai
Baohua Shi
Haitao Gong

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1433892

4,460 views
3 citations

Original Research

Published on 12 Jul 2024

Causal effects of gut microbiota on risk of interstitial cystitis: a two-sample Mendelian randomization study

in Systems Microbiology

Jianguo Gao
Sihai Shao
Yuefan Shen

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1434117

2,212 views
1 citation

Original Research

Published on 12 Jul 2024

The causal relationship between gut microbiota and alopecia areata: a Mendelian randomization analysis

in Systems Microbiology

Dezhao Bi
Jin Tong Tey
Dan Yao
Yutian Cao
Minyu Qian
Jianxin Shi
Shun Guo

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1431646

3,550 views
1 citation

Editorial

Published on 10 Jul 2024

Editorial: Untangle the broad connections and tight interactions between human microbiota and complex diseases through data-driven approaches, volume II

in Systems Microbiology

Qi Zhao
Zuo-Bin Zhu
Jian Li
Li Zhang
Liang Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1449474

845 views

Original Research

Published on 03 Jul 2024

Viability-PCR for the selective detection of Lactobacillus acidophilus and Bifidobacterium bifidum in live bacteria-containing products

in Systems Microbiology

Stefania Catone
Serena Iannantuono
Domenico Genovese
Christina Von Hunolstein
Giovanna Franciosa

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1400529

2,399 views
1 citation