Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 05 Apr 2024

Clostridium butyricum isolated from giant panda can attenuate dextran sodium sulfate-induced colitis in mice

in Systems Microbiology

Shuran Yu
Junjin Xie
Qiang Guo
Xia Yan
Yuxiang Wang
Tangjian Leng
Lin Li
Jielong Zhou
Wenping Zhang
Xiaoyan Su

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1361945

7,185 views
6 citations

Original Research

Published on 05 Apr 2024

A novel front in sustainable microbial management: computational analysis of curcumin and mangiferin’s synergistic action against Bacillus anthracis

in Systems Microbiology

Kahkashan Perveen
Najat A. Bukhari
Najla A. Alshaikh
Suresh Babu Kondaveeti
Jamilah A. Alsulami
Sandip Debnath
Vinoth Kumarasamy

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1304234

2,652 views
1 citation

Review

Published on 04 Apr 2024

Integrating biological knowledge for mechanistic inference in the host-associated microbiome

in Systems Microbiology

Brook E. Santangelo
Madison Apgar
Angela Sofia Burkhart Colorado
Casey G. Martin
John Sterrett
Elena Wall
Marcin P. Joachimiak
Lawrence E. Hunter
Catherine A. Lozupone

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1351678

3,382 views
5 citations

Original Research

Published on 22 Mar 2024

Causal associations of genetically predicted gut microbiota and blood metabolites with inflammatory states and risk of infections: a Mendelian randomization analysis

in Systems Microbiology

Yingjian Liu
Qian Zhu
Gongjie Guo
Zhipeng Xie
Senlin Li
Chengyang Lai
Yonglin Wu
Liansheng Wang
Shilong Zhong

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1342653

5,653 views
4 citations

Original Research

Published on 21 Mar 2024

Enhancing soil health and strawberry disease resistance: the impact of calcium cyanamide treatment on soil microbiota and physicochemical properties

in Systems Microbiology

Ying-chun Du
Can-sheng Yuan
Yu-qi Song
Ying Yang
Qing-song Zheng
Qiong Hou
Di Wang
Lin Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1366814

3,741 views
4 citations

Methods

Published on 20 Mar 2024

CGRWDL: alignment-free phylogeny reconstruction method for viruses based on chaos game representation weighted by dynamical language model

in Systems Microbiology

Ting Wang
Zu-Guo Yu
Jinyan Li

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1339156

2,800 views
5 citations

Original Research

Published on 18 Mar 2024

Benefit analysis of the auto-verification system of intelligent inspection for microorganisms

in Systems Microbiology

Yu-Hsiang Ou
Yung-Ta Chang
Ding-Ping Chen
Chun-Wei Chuang
Kuo-Chien Tsao
Chiu-Hsiang Wu
An-Jing Kuo
Huey-Ling You
Chung-Guei Huang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1334897

4,039 views
1 citation

Original Research

Published on 12 Mar 2024

Super resolution-based methodology for self-supervised segmentation of microscopy images

in Systems Microbiology

Vidya Bommanapally
Dilanga Abeyrathna
Parvathi Chundi
Mahadevan Subramaniam

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1255850

2,931 views
3 citations

Original Research

Published on 11 Mar 2024

Shotgun metagenomics reveals the gut microbial diversity and functions in Vespa mandarinia (Hymenoptera: Vespidae) at multiple life stages

in Systems Microbiology

Peng-Kai Yin
Huai Xiao
Zhi-Bin Yang
Da-Song Yang
Yin-He Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1288051

4,714 views
6 citations

Original Research

Published on 06 Mar 2024

The proteome of bacterial membrane vesicles in Escherichia coli—a time course comparison study in two different media

in Systems Microbiology

Mia S. C. Yu
Dapi Menglin Chiang
Marlene Reithmair
Agnes Meidert
Florian Brandes
Gustav Schelling
Christina Ludwig
Chen Meng
Benedikt Kirchner
Christian Zenner

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1361270

6,176 views
10 citations

Review

Published on 05 Mar 2024

Role of the gut microbiota in the pathogenesis of endometriosis: a review

in Systems Microbiology

Cuishan Guo
Chiyuan Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1363455

22,622 views
23 citations

Review

Published on 05 Mar 2024

Metabolites: a converging node of host and microbe to explain meta-organism

in Systems Microbiology

Nabarun Chakraborty

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1337368

4,457 views
11 citations

Original Research

Published on 05 Mar 2024

Metagenomic evidence for antibiotic-associated actinomycetes in the Karamay Gobi region

in Systems Microbiology

Shuai Yang
Wei Zhang
Bo Yang
Xin Feng
Yiyang Li
Xiaolin Li
Qin Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1330880

3,985 views
10 citations

Original Research

Published on 01 Mar 2024

An optimized culturomics strategy for isolation of human milk microbiota

in Systems Microbiology

Fan Wang
Lingmin Yu
Yuting Ren
Qianwen Zhang
Shanshan He
Minlei Zhao
Zhili He
Qi Gao
Jianguo Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1272062

5,285 views
14 citations

Methods

Published on 27 Feb 2024

A simple protocol for cultivating the bacterivorous soil nematode Caenorhabditis elegans in its natural ecology in the laboratory

in Systems Microbiology

Rocel Amor Indong
Jong Min Park
Jin-Kyung Hong
Eun Sun Lyou
Taeman Han
Jong Kwang Hong
Tae Kwon Lee
Jin I. Lee

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1347797

5,482 views
1 citation

Original Research

Published on 21 Feb 2024

The bacterial and archaeal communities of flies, manure, lagoons, and troughs at a working dairy

in Systems Microbiology

Tawni L. Crippen
Dongmin Kim
Toni L. Poole
Sonja L. Swiger
Robin C. Anderson

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1327841

5,339 views
4 citations

Original Research

Published on 20 Feb 2024

High-throughput screening of the effects of 90 xenobiotics on the simplified human gut microbiota model (SIHUMIx): a metaproteomic and metabolomic study

in Systems Microbiology

Victor Castañeda-Monsalve
Laura-Fabienne Fröhlich
Sven-Bastiaan Haange
Masun Nabhan Homsi
Ulrike Rolle-Kampczyk
Qiuguo Fu
Martin von Bergen
Nico Jehmlich

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1349367

7,893 views
9 citations

Original Research

Published on 15 Feb 2024

Explainable artificial intelligence for microbiome data analysis in colorectal cancer biomarker identification

in Systems Microbiology

Pierfrancesco Novielli
Donato Romano
Michele Magarelli
Pierpaolo Di Bitonto
Domenico Diacono
Annalisa Chiatante
Giuseppe Lopalco
Daniele Sabella
Vincenzo Venerito
Pasquale Filannino

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1348974

11,718 views
51 citations

Original Research

Published on 15 Feb 2024

Investigating causal associations among gut microbiota, metabolites, and psoriatic arthritis: a Mendelian randomization study

in Systems Microbiology

Xiao Xu
Lin-yun Wu
Shu-yun Wang
Min Yan
Yuan-Hong Wang
Li Li
Zhi-ling Sun
Ji-Xiang Zhao

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1287637

7,296 views
6 citations

Original Research

Published on 14 Feb 2024

Discovery of novel replication proteins for large plasmids in cyanobacteria and their potential applications in genetic engineering

in Systems Microbiology

Kazuma Ohdate
Minori Sakata
Kaisei Maeda
Yutaka Sakamaki
Kaori Nimura-Matsune
Ryudo Ohbayashi
Wolfgang R. Hess
Satoru Watanabe

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1311290

5,727 views
5 citations

Methods

Published on 12 Feb 2024

Unraveling the microbiome-metabolome nexus: a comprehensive study protocol for personalized management of Behçet’s disease using explainable artificial intelligence

in Systems Microbiology

Sabina Tangaro
Giuseppe Lopalco
Daniele Sabella
Vincenzo Venerito
Pierfrancesco Novielli
Donato Romano
Alessia Di Gilio
Jolanda Palmisani
Gianluigi de Gennaro
Pasquale Filannino

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1341152

3,119 views
4 citations

Original Research

Published on 09 Feb 2024

Effects of type of substrate and dilution rate on fermentation in serial rumen mixed cultures

in Systems Microbiology

Emilio M. Ungerfeld
Nathaly Cancino-Padilla
Nelson Vera-Aguilera
M. Carolina Scorcione
Marcelo Saldivia
Lorena Lagos-Pailla
Milena Vera
Cristián Cerda
Camila Muñoz
Natalie Urrutia

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1356966

4,155 views
3 citations

Editorial

Published on 09 Feb 2024

Editorial: Risk assessment of mycotoxins on metabolism, immunity, and intestinal health

in Systems Microbiology

Einar Ringø
Xiaoyum He
Xiao Li Shen
Jing Jin
Fuguo Xing

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1367261

1,933 views
1 citation

Original Research

Published on 08 Feb 2024

Whole genome sequencing and characterization of Pantoea agglomerans DBM 3797, endophyte, isolated from fresh hop (Humulus lupulus L.)

in Systems Microbiology

Petra Patakova
Maryna Vasylkivska
Karel Sedlar
Katerina Jureckova
Matej Bezdicek
Petra Lovecka
Barbora Branska
Petr Kastanek
Karel Krofta

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1305338

7,295 views
3 citations

1,781 articles

articles

Clostridium butyricum isolated from giant panda can attenuate dextran sodium sulfate-induced colitis in mice

A novel front in sustainable microbial management: computational analysis of curcumin and mangiferin’s synergistic action against Bacillus anthracis

Integrating biological knowledge for mechanistic inference in the host-associated microbiome

Causal associations of genetically predicted gut microbiota and blood metabolites with inflammatory states and risk of infections: a Mendelian randomization analysis

Enhancing soil health and strawberry disease resistance: the impact of calcium cyanamide treatment on soil microbiota and physicochemical properties

CGRWDL: alignment-free phylogeny reconstruction method for viruses based on chaos game representation weighted by dynamical language model

Benefit analysis of the auto-verification system of intelligent inspection for microorganisms

Super resolution-based methodology for self-supervised segmentation of microscopy images

Shotgun metagenomics reveals the gut microbial diversity and functions in Vespa mandarinia (Hymenoptera: Vespidae) at multiple life stages

The proteome of bacterial membrane vesicles in Escherichia coli—a time course comparison study in two different media

Role of the gut microbiota in the pathogenesis of endometriosis: a review

Metabolites: a converging node of host and microbe to explain meta-organism

Metagenomic evidence for antibiotic-associated actinomycetes in the Karamay Gobi region

An optimized culturomics strategy for isolation of human milk microbiota

A simple protocol for cultivating the bacterivorous soil nematode Caenorhabditis elegans in its natural ecology in the laboratory

The bacterial and archaeal communities of flies, manure, lagoons, and troughs at a working dairy

High-throughput screening of the effects of 90 xenobiotics on the simplified human gut microbiota model (SIHUMIx): a metaproteomic and metabolomic study

Explainable artificial intelligence for microbiome data analysis in colorectal cancer biomarker identification

Investigating causal associations among gut microbiota, metabolites, and psoriatic arthritis: a Mendelian randomization study

Discovery of novel replication proteins for large plasmids in cyanobacteria and their potential applications in genetic engineering

Unraveling the microbiome-metabolome nexus: a comprehensive study protocol for personalized management of Behçet’s disease using explainable artificial intelligence

Effects of type of substrate and dilution rate on fermentation in serial rumen mixed cultures

Editorial: Risk assessment of mycotoxins on metabolism, immunity, and intestinal health

Whole genome sequencing and characterization of Pantoea agglomerans DBM 3797, endophyte, isolated from fresh hop (Humulus lupulus L.)