Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 10 May 2024

Bacterial–fungal interactions and response to heavy metal contamination of soil in agricultural areas

in Systems Microbiology

Jia Li
Qiwen Zheng
Jiangyun Liu
Shuwei Pei
Zhen Yang
Rentong Chen
Li Ma
Jingping Niu
Tian Tian

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1395154

4,842 views
21 citations

Original Research

Published on 03 May 2024

Immune cells mediated the causal relationship between the gut microbiota and lung cancer: a Mendelian randomization study

in Systems Microbiology

Zhiting Chen
Zhe Wang
Hao Ma
Hejing Bao
Ting Jiang
Ting Yang
Shudong Ma

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1390722

12,608 views
11 citations

Review

Published on 02 May 2024

Insights into the oral microbiota in human systemic cancers

in Systems Microbiology

Lan Su
Rui Yang
Yanan Sheng
Saif Ullah
Yuheng Zhao
Hu Shunjiayi
Zhuo Zhao
Qingjing Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1369834

4,491 views
9 citations

Original Research

Published on 24 Apr 2024

The characteristics of intratumoral microbial community reflect the development of lung adenocarcinoma

in Systems Microbiology

Yanfang Su
Shiyu Li
Die Sang
Yurong Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1353940

3,185 views
7 citations

Original Research

Published on 24 Apr 2024

Unraveling the dynamic transcriptomic changes during the dimorphic transition of Talaromyces marneffei through time-course analysis

in Systems Microbiology

Minghao Du
Changyu Tao
Xueyan Hu
Yun Zhang
Jun Kan
Juan Wang
Ence Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1369349

2,861 views
7 citations

Original Research

Published on 19 Apr 2024

Real-time PCR methods for identification and stability monitoring of Bifidobacterium longum subsp. longum UABl-14 during shelf life

in Systems Microbiology

Hanan R. Shehata
Basma Hassane
Steven G. Newmaster

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1360241

3,524 views
1 citation

Original Research

Published on 17 Apr 2024

Population characteristics of pathogenic Escherichia coli in puerperal metritis of dairy cows in Ningxia region of China: a systemic taxa distribution of virulence factors and drug resistance genes

in Systems Microbiology

Shihao Wei
Baolong Ding
Guiqin Wang
Shuangyan Luo
Hongxi Zhao
Xingang Dan

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1364373

3,451 views
3 citations

Original Research

Published on 10 Apr 2024

Microbial signatures and enterotype clusters in fattening pigs: implications for nitrogen utilization efficiency

in Systems Microbiology

Naomi Sarpong
Jana Seifert
Jörn Bennewitz
Markus Rodehutscord
Amélia Camarinha-Silva

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1354537

3,231 views
7 citations

Original Research

Published on 10 Apr 2024

Causal association between gut microbiomes and different types of aneurysms: a Mendelian randomization study

in Systems Microbiology

Youjia Qiu
Yucheng Hou
Xingzhou Wei
Menghan Wang
Ziqian Yin
Minjia Xie
Aojie Duan
Chao Ma
Ke Si
Zhong Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1267888

3,828 views
5 citations

Original Research

Published on 08 Apr 2024

Causal effects of gut microbiota on the prognosis of ischemic stroke: evidence from a bidirectional two-sample Mendelian randomization study

in Systems Microbiology

Anning Zhu
Peng Li
Yuzhou Chu
Xiuxiang Wei
Jiangna Zhao
Longfei Luo
Tao Zhang
Juntao Yan

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1346371

4,280 views
4 citations

Original Research

Published on 08 Apr 2024

Effects of coated sodium butyrate on the growth performance, serum biochemistry, antioxidant capacity, intestinal morphology, and intestinal microbiota of broiler chickens

in Systems Microbiology

Jinwang Hou
Lizhi Lu
Lina Lian
Yong Tian
Tao Zeng
Yanfen Ma
Sisi Li
Li Chen
Wenwu Xu
Tiantian Gu

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1368736

4,174 views
6 citations

Original Research

Published on 08 Apr 2024

Transcriptional dynamics and regulatory function of milRNAs in Ascosphaera apis invading Apis mellifera larvae

in Systems Microbiology

Xiaoxue Fan
Xuze Gao
He Zang
Zhitan Liu
Xin Jing
Xiaoyu Liu
Sijia Guo
Haibin Jiang
Ying Wu
Zhijian Huang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1355035

2,744 views
2 citations

Original Research

Published on 05 Apr 2024

Clostridium butyricum isolated from giant panda can attenuate dextran sodium sulfate-induced colitis in mice

in Systems Microbiology

Shuran Yu
Junjin Xie
Qiang Guo
Xia Yan
Yuxiang Wang
Tangjian Leng
Lin Li
Jielong Zhou
Wenping Zhang
Xiaoyan Su

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1361945

7,437 views
6 citations

Original Research

Published on 05 Apr 2024

A novel front in sustainable microbial management: computational analysis of curcumin and mangiferin’s synergistic action against Bacillus anthracis

in Systems Microbiology

Kahkashan Perveen
Najat A. Bukhari
Najla A. Alshaikh
Suresh Babu Kondaveeti
Jamilah A. Alsulami
Sandip Debnath
Vinoth Kumarasamy

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1304234

2,861 views
1 citation

Review

Published on 04 Apr 2024

Integrating biological knowledge for mechanistic inference in the host-associated microbiome

in Systems Microbiology

Brook E. Santangelo
Madison Apgar
Angela Sofia Burkhart Colorado
Casey G. Martin
John Sterrett
Elena Wall
Marcin P. Joachimiak
Lawrence E. Hunter
Catherine A. Lozupone

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1351678

3,652 views
6 citations

Original Research

Published on 22 Mar 2024

Causal associations of genetically predicted gut microbiota and blood metabolites with inflammatory states and risk of infections: a Mendelian randomization analysis

in Systems Microbiology

Yingjian Liu
Qian Zhu
Gongjie Guo
Zhipeng Xie
Senlin Li
Chengyang Lai
Yonglin Wu
Liansheng Wang
Shilong Zhong

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1342653

5,911 views
5 citations

Original Research

Published on 21 Mar 2024

Enhancing soil health and strawberry disease resistance: the impact of calcium cyanamide treatment on soil microbiota and physicochemical properties

in Systems Microbiology

Ying-chun Du
Can-sheng Yuan
Yu-qi Song
Ying Yang
Qing-song Zheng
Qiong Hou
Di Wang
Lin Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1366814

4,091 views
4 citations

Methods

Published on 20 Mar 2024

CGRWDL: alignment-free phylogeny reconstruction method for viruses based on chaos game representation weighted by dynamical language model

in Systems Microbiology

Ting Wang
Zu-Guo Yu
Jinyan Li

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1339156

3,020 views
5 citations

Original Research

Published on 18 Mar 2024

Benefit analysis of the auto-verification system of intelligent inspection for microorganisms

in Systems Microbiology

Yu-Hsiang Ou
Yung-Ta Chang
Ding-Ping Chen
Chun-Wei Chuang
Kuo-Chien Tsao
Chiu-Hsiang Wu
An-Jing Kuo
Huey-Ling You
Chung-Guei Huang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1334897

4,270 views
1 citation

Original Research

Published on 12 Mar 2024

Super resolution-based methodology for self-supervised segmentation of microscopy images

in Systems Microbiology

Vidya Bommanapally
Dilanga Abeyrathna
Parvathi Chundi
Mahadevan Subramaniam

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1255850

3,255 views
5 citations

Original Research

Published on 11 Mar 2024

Shotgun metagenomics reveals the gut microbial diversity and functions in Vespa mandarinia (Hymenoptera: Vespidae) at multiple life stages

in Systems Microbiology

Peng-Kai Yin
Huai Xiao
Zhi-Bin Yang
Da-Song Yang
Yin-He Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1288051

5,021 views
6 citations

Original Research

Published on 06 Mar 2024

The proteome of bacterial membrane vesicles in Escherichia coli—a time course comparison study in two different media

in Systems Microbiology

Mia S. C. Yu
Dapi Menglin Chiang
Marlene Reithmair
Agnes Meidert
Florian Brandes
Gustav Schelling
Christina Ludwig
Chen Meng
Benedikt Kirchner
Christian Zenner

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1361270

6,589 views
13 citations

Review

Published on 05 Mar 2024

Role of the gut microbiota in the pathogenesis of endometriosis: a review

in Systems Microbiology

Cuishan Guo
Chiyuan Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1363455

24,279 views
29 citations

Review

Published on 05 Mar 2024

Metabolites: a converging node of host and microbe to explain meta-organism

in Systems Microbiology

Nabarun Chakraborty

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1337368

4,860 views
12 citations

1,793 articles

articles

Bacterial–fungal interactions and response to heavy metal contamination of soil in agricultural areas

Immune cells mediated the causal relationship between the gut microbiota and lung cancer: a Mendelian randomization study

Insights into the oral microbiota in human systemic cancers

The characteristics of intratumoral microbial community reflect the development of lung adenocarcinoma

Unraveling the dynamic transcriptomic changes during the dimorphic transition of Talaromyces marneffei through time-course analysis

Real-time PCR methods for identification and stability monitoring of Bifidobacterium longum subsp. longum UABl-14 during shelf life

Population characteristics of pathogenic Escherichia coli in puerperal metritis of dairy cows in Ningxia region of China: a systemic taxa distribution of virulence factors and drug resistance genes

Microbial signatures and enterotype clusters in fattening pigs: implications for nitrogen utilization efficiency

Causal association between gut microbiomes and different types of aneurysms: a Mendelian randomization study

Causal effects of gut microbiota on the prognosis of ischemic stroke: evidence from a bidirectional two-sample Mendelian randomization study

Effects of coated sodium butyrate on the growth performance, serum biochemistry, antioxidant capacity, intestinal morphology, and intestinal microbiota of broiler chickens

Transcriptional dynamics and regulatory function of milRNAs in Ascosphaera apis invading Apis mellifera larvae

Clostridium butyricum isolated from giant panda can attenuate dextran sodium sulfate-induced colitis in mice

A novel front in sustainable microbial management: computational analysis of curcumin and mangiferin’s synergistic action against Bacillus anthracis

Integrating biological knowledge for mechanistic inference in the host-associated microbiome

Causal associations of genetically predicted gut microbiota and blood metabolites with inflammatory states and risk of infections: a Mendelian randomization analysis

Enhancing soil health and strawberry disease resistance: the impact of calcium cyanamide treatment on soil microbiota and physicochemical properties

CGRWDL: alignment-free phylogeny reconstruction method for viruses based on chaos game representation weighted by dynamical language model

Benefit analysis of the auto-verification system of intelligent inspection for microorganisms

Super resolution-based methodology for self-supervised segmentation of microscopy images

Shotgun metagenomics reveals the gut microbial diversity and functions in Vespa mandarinia (Hymenoptera: Vespidae) at multiple life stages

The proteome of bacterial membrane vesicles in Escherichia coli—a time course comparison study in two different media

Role of the gut microbiota in the pathogenesis of endometriosis: a review

Metabolites: a converging node of host and microbe to explain meta-organism