Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 08 Feb 2024

Assessing probiotic viability in mixed species yogurt using a novel propidium monoazide (PMAxx)-quantitative PCR method

in Systems Microbiology

Tlaleo A. Marole
Thulani Sibanda
Elna M. Buys

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1325268

4,764 views
7 citations

Original Research

Published on 08 Feb 2024

Genetically supported causality between gut microbiota, immune cells and morphine tolerance: a two-sample Mendelian randomization study

in Systems Microbiology

Shuai Han
Jiapei Gao
Zi Wang
Yinggang Xiao
Yali Ge
Yongxin Liang
Ju Gao

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1343763

4,177 views
6 citations

Original Research

Published on 07 Feb 2024

Oral_voting_transfer: classification of oral microorganisms’ function proteins with voting transfer model

in Systems Microbiology

Wenzheng Bao
Yujun Liu
Baitong Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1277121

3,653 views
39 citations

Review

Published on 02 Feb 2024

Bifidobacterium species viability in dairy-based probiotic foods: challenges and innovative approaches for accurate viability determination and monitoring of probiotic functionality

in Systems Microbiology

Thulani Sibanda
Tlaleo Azael Marole
Ursula Louise Thomashoff
Mapitsi S. Thantsha
Elna M. Buys

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1327010

17,132 views
38 citations

Original Research

Published on 02 Feb 2024

Mendelian randomization analysis reveals an independent causal relationship between four gut microbes and acne vulgaris

in Systems Microbiology

Yujia Wu
Xiaoyun Wang
Wenjuan Wu
Jiankang Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1326339

5,732 views
10 citations

Original Research

Published on 02 Feb 2024

MLFLHMDA: predicting human microbe-disease association based on multi-view latent feature learning

in Systems Microbiology

Ziwei Chen
Liangzhe Zhang
Jingyi Li
Mingyang Fu

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1353278

2,233 views
6 citations

Technology and Code

Published on 31 Jan 2024

CyanoCyc cyanobacterial web portal

in Systems Microbiology

Lisa R. Moore
Ron Caspi
Douglas A. Campbell
John R. Casey
Sophie Crevecoeur
David J. Lea-Smith
Bin Long
Naaman M. Omar
Suzanne M. Paley
Nicolas M. Schmelling

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1340413

11,316 views
11 citations

Editorial

Published on 30 Jan 2024

Editorial: The role of commensal microbiota in drug metabolism: friend or foe?

in Systems Microbiology

Jing-Hua Wang
Dong-Woo Lim
Mukesh Kumar Yadav
Xiao Zheng

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1364747

2,262 views

Original Research

Published on 29 Jan 2024

Causal relationship between gut microbiota and hidradenitis suppurativa: a two-sample Mendelian randomization study

in Systems Microbiology

Chengling Liu
Xingchen Liu
Xin Li

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1302822

6,017 views
14 citations

Review

Published on 29 Jan 2024

Linkages between rumen microbiome, host, and environment in yaks, and their implications for understanding animal production and management

in Systems Microbiology

Weiwei Wang
Yuntao Dong
Wei Guo
Xiao Zhang
A. Allan Degen
Sisi Bi
Luming Ding
Xiang Chen
Ruijun Long

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1301258

8,192 views
19 citations

Original Research

Published on 25 Jan 2024

Gut microbiota, circulating metabolites, and gallstone disease: a Mendelian randomization study

in Systems Microbiology

Xutao Hu
Qiu Binxu
Guang-zhao Shao
Yu Huang
Wei Qiu

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1336673

8,194 views
13 citations

Original Research

Published on 22 Jan 2024

Exploring the interplay between running exercises, microbial diversity, and tryptophan metabolism along the microbiota-gut-brain axis

in Systems Microbiology

Alejandra Vazquez-Medina
Nicole Rodriguez-Trujillo
Kiara Ayuso-Rodriguez
Fabiana Marini-Martinez
Roberto Angeli-Morales
Gerardo Caussade-Silvestrini
Filipa Godoy-Vitorino
Nataliya Chorna

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1326584

5,917 views
12 citations

Mini Review

Published on 19 Jan 2024

Artificial intelligence-driven microbiome data analysis for estimation of postmortem interval and crime location

in Systems Microbiology

Ze Wu
Yaoxing Guo
Miren Hayakawa
Wei Yang
Yansong Lu
Jingyi Ma
Linghui Li
Chuntao Li
Yingchun Liu
Jun Niu

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1334703

7,405 views
8 citations

Original Research

Published on 19 Jan 2024

Potential effects of specific gut microbiota on periodontal disease: a two-sample bidirectional Mendelian randomization study

in Systems Microbiology

Meng Xu
Qiang Shao
Yinglu Zhou
Yili Yu
Shuwei Wang
An Wang
Yida Cai

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1322947

5,294 views
6 citations

Original Research

Published on 15 Jan 2024

Causal relationship between gut microflora and dementia: a Mendelian randomization study

in Systems Microbiology

Jinjie Fu
Yuan Qin
Lingyong Xiao
Xiaoyu Dai

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1306048

7,614 views
20 citations

Original Research

Published on 15 Jan 2024

Genetically predicted causality between gut microbiota, blood metabolites, and intracerebral hemorrhage: a bidirectional Mendelian randomization study

in Systems Microbiology

Tianlong Zhang
Gang Liu
Yina Cao
Jianqiang Zhao
Siyi Jiang
Ya Zhang
Min Li

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1257405

4,713 views
1 citation

Original Research

Published on 12 Jan 2024

Sheep and goat pathogen database: a pathogen data integration and analysis database of sheep and goat infectious diseases

in Systems Microbiology

Haoju Pan
Zizhuo Jiao
Hong Li
Suya Li
Le Xu
Shiyuan Li
Yong Meng
Yujing Fu
Taoyu Chen
Qiaoling Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1299303

4,013 views
1 citation

Original Research

Published on 11 Jan 2024

Unveiling Curvularia tuberculata-induced leaf anomalies in Rhododendron ferrugineum: implications in cultural-ecological conservation and harnessing microbial intervention in socio-economic advancement

in Systems Microbiology

Juhita Dhar
Aishee Hazra
Riddhisha Patra
Varun Kumar
Vetriselvan Subramaniyan
Vinoth Kumarasamy
Arup Kumar Mitra
Amany A. Sayed
Lotfi Aleya
Fatma M. El-Demerdash

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1280120

3,936 views
3 citations

Original Research

Published on 08 Jan 2024

MDSVDNV: predicting microbe–drug associations by singular value decomposition and Node2vec

in Systems Microbiology

Huilin Tan
Zhen Zhang
Xin Liu
Yiming Chen
Zinuo Yang
Lei Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1303585

2,593 views
13 citations

Original Research

Published on 08 Jan 2024

Associations of central obesity and habitual food consumption with saliva microbiota and its enzymatic profiles – a pilot study in Finnish children

in Systems Microbiology

Nitin Agrawal
Federico Fontana
Chiara Tarracchini
Sohvi Lommi
Marco Ventura
Christian Milani
Heli Viljakainen

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1323346

3,580 views
1 citation

Editorial

Published on 08 Jan 2024

Editorial: Environments-pathogens-the gut microbiota and host diseases

in Systems Microbiology

Jinbo Xiong
Zunji Shi

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1357125

1,467 views
1 citation

Editorial

Published on 05 Jan 2024

Editorial: Mapping the exposome and investigating its role in human and environmental health

in Systems Microbiology

Peng Gao
Feng Ju
Chao Jiang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1353623

2,066 views

Original Research

Published on 03 Jan 2024

The impact of transitive annotation on the training of taxonomic classifiers

in Systems Microbiology

Harihara Subrahmaniam Muralidharan
Noam Y. Fox
Mihai Pop

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1240957

2,276 views
2 citations

Original Research

Published on 22 Dec 2023

The cause-and-effect relationship between gut microbiota abundance and carcinoid syndrome: a bidirectional Mendelian randomization study

in Systems Microbiology

Zexin Zhang
Dongting Li
Fengxi Xie
Gulizeba Muhetaer
Haibo Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1291699

4,734 views
13 citations

1,781 articles

articles

Assessing probiotic viability in mixed species yogurt using a novel propidium monoazide (PMAxx)-quantitative PCR method

Genetically supported causality between gut microbiota, immune cells and morphine tolerance: a two-sample Mendelian randomization study

Oral_voting_transfer: classification of oral microorganisms’ function proteins with voting transfer model

Bifidobacterium species viability in dairy-based probiotic foods: challenges and innovative approaches for accurate viability determination and monitoring of probiotic functionality

Mendelian randomization analysis reveals an independent causal relationship between four gut microbes and acne vulgaris

MLFLHMDA: predicting human microbe-disease association based on multi-view latent feature learning

CyanoCyc cyanobacterial web portal

Editorial: The role of commensal microbiota in drug metabolism: friend or foe?

Causal relationship between gut microbiota and hidradenitis suppurativa: a two-sample Mendelian randomization study

Linkages between rumen microbiome, host, and environment in yaks, and their implications for understanding animal production and management

Gut microbiota, circulating metabolites, and gallstone disease: a Mendelian randomization study

Exploring the interplay between running exercises, microbial diversity, and tryptophan metabolism along the microbiota-gut-brain axis

Artificial intelligence-driven microbiome data analysis for estimation of postmortem interval and crime location

Potential effects of specific gut microbiota on periodontal disease: a two-sample bidirectional Mendelian randomization study

Causal relationship between gut microflora and dementia: a Mendelian randomization study

Genetically predicted causality between gut microbiota, blood metabolites, and intracerebral hemorrhage: a bidirectional Mendelian randomization study

Sheep and goat pathogen database: a pathogen data integration and analysis database of sheep and goat infectious diseases

Unveiling Curvularia tuberculata-induced leaf anomalies in Rhododendron ferrugineum: implications in cultural-ecological conservation and harnessing microbial intervention in socio-economic advancement

MDSVDNV: predicting microbe–drug associations by singular value decomposition and Node2vec

Associations of central obesity and habitual food consumption with saliva microbiota and its enzymatic profiles – a pilot study in Finnish children

Editorial: Environments-pathogens-the gut microbiota and host diseases

Editorial: Mapping the exposome and investigating its role in human and environmental health

The impact of transitive annotation on the training of taxonomic classifiers

The cause-and-effect relationship between gut microbiota abundance and carcinoid syndrome: a bidirectional Mendelian randomization study