Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 15 Dec 2023

Rumen and fecal microbiomes are related to diet and production traits in Bos indicus beef cattle

in Systems Microbiology

Liliane Costa Conteville
Juliana Virginio da Silva
Bruno Gabriel Nascimento Andrade
Tainã Figueiredo Cardoso
Jennifer Jessica Bruscadin
Priscila Silva Neubern de Oliveira
Gerson Barreto Mourão
Luiz Lehmann Coutinho
Julio Cesar Pascale Palhares
Alexandre Berndt

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1282851

3,690 views

Technology and Code

Published on 14 Dec 2023

Automating methods for estimating metabolite volatility

in Systems Microbiology

Laura K. Meredith
S. Marshall Ledford
Kristina Riemer
Parker Geffre
Kelsey Graves
Linnea K. Honeker
David LeBauer
Malak M. Tfaily
Jordan Krechmer

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1267234

2,338 views
1 citation

Original Research

Published on 14 Dec 2023

An efficient model for predicting human diseases through miRNA based on multiple-types of contrastive learning

in Systems Microbiology

Qingquan Liao
Xiangzheng Fu
Linlin Zhuo
Hao Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1325001

1,052 views
1 citation

Original Research

Published on 12 Dec 2023

Uncovering a causal connection between the Lachnoclostridium genus in fecal microbiota and non-alcoholic fatty liver disease: a two-sample Mendelian randomization analysis

in Systems Microbiology

Wanhui Dai
Dandong Cai
Shuai Zhou
Ang Li
Jinsong Xie
Jie Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1276790

3,227 views
3 citations

Original Research

Published on 07 Dec 2023

Marvels of Bacilli in soil amendment for plant-growth promotion toward sustainable development having futuristic socio-economic implications

in Systems Microbiology

Meenakshi Mukhopadhyay
Ashutosh Mukherjee
Sayak Ganguli
Archisman Chakraborti
Samrat Roy
Sudeshna Shyam Choudhury
Vetriselvan Subramaniyan
Vinoth Kumarasamy
Amany A. Sayed
Fatma M. El-Demerdash

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1293302

4,350 views
1 citation

Review

Published on 07 Dec 2023

Probiotic and postbiotic analytical methods: a perspective of available enumeration techniques

in Systems Microbiology

Marie-Eve Boyte
Andrzej Benkowski
Marco Pane
Hanan R. Shehata

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1304621

8,693 views
10 citations

Original Research

Published on 06 Dec 2023

CRISPR-Cas systems feature and targeting phages diversity in Lacticaseibacillus rhamnosus strains

in Systems Microbiology

Bahman Panahi
Behnaz Dehganzad
Yousef Nami

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1281307

1,679 views
4 citations

Review

Published on 05 Dec 2023

Application of artificial intelligence approaches to predict the metabolism of xenobiotic molecules by human gut microbiome

in Systems Microbiology

Aditya S. Malwe
Vineet K. Sharma

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1254073

3,678 views

Original Research

Published on 04 Dec 2023

Rapid discrimination of Bifidobacterium longum subspecies based on MALDI-TOF MS and machine learning

in Systems Microbiology

Kexin Liu
Yajie Wang
Minlei Zhao
Gaogao Xue
Ailan Wang
Weijie Wang
Lida Xu
Jianguo Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1297451

1,800 views
2 citations

Original Research

Published on 04 Dec 2023

Phenotypic shifts induced by environmental pre-stressors modify antibiotic resistance in Staphylococcus aureus

in Systems Microbiology

Gui Nam Wee
Eun Sun Lyou
Susmita Das Nishu
Tae Kwon Lee

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1304509

1,170 views

Original Research

Published on 04 Dec 2023

Insight into the mechanism of gallstone disease by proteomic and metaproteomic characterization of human bile

in Systems Microbiology

Xue-Ting Yang
Jie Wang
Ying-Hua Jiang
Lei Zhang
Ling Du
Jun Li
Feng Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1276951

3,106 views
2 citations

Review

Published on 01 Dec 2023

The interplay between the microbiota, diet and T regulatory cells in the preservation of the gut barrier in inflammatory bowel disease

in Systems Microbiology

Kathryn Prame Kumar
Joshua D. Ooi
Rimma Goldberg

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1291724

3,064 views
8 citations

Review

Published on 30 Nov 2023

Exploring the role of gut microbiota in advancing personalized medicine

in Systems Microbiology

Gouxin Huang
Raees Khan
Yilin Zheng
Ping-Chin Lee
Qingnan Li
Imran Khan

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1274925

5,274 views
6 citations

Original Research

Published on 28 Nov 2023

Agromyces chromiiresistens sp. nov., Novosphingobium album sp. nov., Sphingobium arseniciresistens sp. nov., Sphingomonas pollutisoli sp. nov., and Salinibacterium metalliresistens sp. nov.: five new members of Microbacteriaceae and Sphingomonadaceae from polluted soil

in Systems Microbiology

Ze-Shen Liu
Ke-Huan Wang
Man Cai
Mei-Ling Yang
Xiao-Kang Wang
Hong-Lin Ma
Yi-Han Yuan
Lin-Huan Wu
De-Feng Li
Shuang-Jiang Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1289110

1,836 views
2 citations

Original Research

Published on 23 Nov 2023

Causal effects of gut microbiome on hypertension: a Mendelian randomization study

in Systems Microbiology

Gang He
Yu Cao
Houzhao Wang
Xiaoying Lv

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1276050

3,455 views

Original Research

Published on 23 Nov 2023

Causal relationship between gut microbiota and immune thrombocytopenia: a Mendelian randomization study of two samples

in Systems Microbiology

Dongmei Guo
Qian Chen
Guojun Wang
ChunPu Li
FinnGen consortium

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1190866

4,088 views
4 citations

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Articles

Rumen and fecal microbiomes are related to diet and production traits in Bos indicus beef cattle

Automating methods for estimating metabolite volatility

An efficient model for predicting human diseases through miRNA based on multiple-types of contrastive learning

Uncovering a causal connection between the Lachnoclostridium genus in fecal microbiota and non-alcoholic fatty liver disease: a two-sample Mendelian randomization analysis

Marvels of Bacilli in soil amendment for plant-growth promotion toward sustainable development having futuristic socio-economic implications

Probiotic and postbiotic analytical methods: a perspective of available enumeration techniques

CRISPR-Cas systems feature and targeting phages diversity in Lacticaseibacillus rhamnosus strains

Application of artificial intelligence approaches to predict the metabolism of xenobiotic molecules by human gut microbiome

Rapid discrimination of Bifidobacterium longum subspecies based on MALDI-TOF MS and machine learning

Phenotypic shifts induced by environmental pre-stressors modify antibiotic resistance in Staphylococcus aureus

Insight into the mechanism of gallstone disease by proteomic and metaproteomic characterization of human bile

The interplay between the microbiota, diet and T regulatory cells in the preservation of the gut barrier in inflammatory bowel disease

Exploring the role of gut microbiota in advancing personalized medicine

Agromyces chromiiresistens sp. nov., Novosphingobium album sp. nov., Sphingobium arseniciresistens sp. nov., Sphingomonas pollutisoli sp. nov., and Salinibacterium metalliresistens sp. nov.: five new members of Microbacteriaceae and Sphingomonadaceae from polluted soil

Causal effects of gut microbiome on hypertension: a Mendelian randomization study

Causal relationship between gut microbiota and immune thrombocytopenia: a Mendelian randomization study of two samples