Frontiers in Microbiology | Systems Microbiology

Mini Review

Published on 19 Jan 2024

Artificial intelligence-driven microbiome data analysis for estimation of postmortem interval and crime location

in Systems Microbiology

Ze Wu
Yaoxing Guo
Miren Hayakawa
Wei Yang
Yansong Lu
Jingyi Ma
Linghui Li
Chuntao Li
Yingchun Liu
Jun Niu

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1334703

8,128 views
13 citations

Original Research

Published on 19 Jan 2024

Potential effects of specific gut microbiota on periodontal disease: a two-sample bidirectional Mendelian randomization study

in Systems Microbiology

Meng Xu
Qiang Shao
Yinglu Zhou
Yili Yu
Shuwei Wang
An Wang
Yida Cai

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1322947

5,566 views
6 citations

Original Research

Published on 15 Jan 2024

Causal relationship between gut microflora and dementia: a Mendelian randomization study

in Systems Microbiology

Jinjie Fu
Yuan Qin
Lingyong Xiao
Xiaoyu Dai

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1306048

8,013 views
21 citations

Original Research

Published on 15 Jan 2024

Genetically predicted causality between gut microbiota, blood metabolites, and intracerebral hemorrhage: a bidirectional Mendelian randomization study

in Systems Microbiology

Tianlong Zhang
Gang Liu
Yina Cao
Jianqiang Zhao
Siyi Jiang
Ya Zhang
Min Li

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1257405

4,974 views
2 citations

Original Research

Published on 12 Jan 2024

Sheep and goat pathogen database: a pathogen data integration and analysis database of sheep and goat infectious diseases

in Systems Microbiology

Haoju Pan
Zizhuo Jiao
Hong Li
Suya Li
Le Xu
Shiyuan Li
Yong Meng
Yujing Fu
Taoyu Chen
Qiaoling Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1299303

4,314 views
1 citation

Original Research

Published on 11 Jan 2024

Unveiling Curvularia tuberculata-induced leaf anomalies in Rhododendron ferrugineum: implications in cultural-ecological conservation and harnessing microbial intervention in socio-economic advancement

in Systems Microbiology

Juhita Dhar
Aishee Hazra
Riddhisha Patra
Varun Kumar
Vetriselvan Subramaniyan
Vinoth Kumarasamy
Arup Kumar Mitra
Amany A. Sayed
Lotfi Aleya
Fatma M. El-Demerdash

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1280120

4,218 views
3 citations

Original Research

Published on 08 Jan 2024

MDSVDNV: predicting microbe–drug associations by singular value decomposition and Node2vec

in Systems Microbiology

Huilin Tan
Zhen Zhang
Xin Liu
Yiming Chen
Zinuo Yang
Lei Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1303585

2,794 views
13 citations

Original Research

Published on 08 Jan 2024

Associations of central obesity and habitual food consumption with saliva microbiota and its enzymatic profiles – a pilot study in Finnish children

in Systems Microbiology

Nitin Agrawal
Federico Fontana
Chiara Tarracchini
Sohvi Lommi
Marco Ventura
Christian Milani
Heli Viljakainen

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1323346

3,782 views
1 citation

Editorial

Published on 08 Jan 2024

Editorial: Environments-pathogens-the gut microbiota and host diseases

in Systems Microbiology

Jinbo Xiong
Zunji Shi

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1357125

1,594 views
1 citation

Editorial

Published on 05 Jan 2024

Editorial: Mapping the exposome and investigating its role in human and environmental health

in Systems Microbiology

Peng Gao
Feng Ju
Chao Jiang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1353623

2,211 views

Original Research

Published on 03 Jan 2024

The impact of transitive annotation on the training of taxonomic classifiers

in Systems Microbiology

Harihara Subrahmaniam Muralidharan
Noam Y. Fox
Mihai Pop

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1240957

2,472 views
2 citations

Original Research

Published on 22 Dec 2023

The cause-and-effect relationship between gut microbiota abundance and carcinoid syndrome: a bidirectional Mendelian randomization study

in Systems Microbiology

Zexin Zhang
Dongting Li
Fengxi Xie
Gulizeba Muhetaer
Haibo Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1291699

4,981 views
13 citations

Original Research

Published on 22 Dec 2023

Metabolic profiling of petroleum-degrading microbial communities incubated under high-pressure conditions

in Systems Microbiology

Jinbo Xu
Lu Wang
Weifeng Lv
Xinmin Song
Yong Nie
Xiao-Lei Wu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1305731

5,274 views
10 citations

Original Research

Published on 22 Dec 2023

The causal effects between gut microbiota and hemorrhagic stroke: a bidirectional two-sample Mendelian randomization study

in Systems Microbiology

Yingjie Shen
Hao Liu
Xiangyi Meng
Aili Gao
Yansong Liu
Wei Ma
Hongsheng Liang
Fulan Hu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1290909

5,635 views
12 citations

Original Research

Published on 20 Dec 2023

Role of gut microbiota and inflammatory factors in acute respiratory distress syndrome: a Mendelian randomization analysis

in Systems Microbiology

Jiawei Ma
Zigang Zhu
Yisikandeer Yishajiang
Khaloud Mohammed Alarjani
Lei Hong
Liang Luo

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1294692

5,744 views
15 citations

Original Research

Published on 18 Dec 2023

Gut microbiota functional profiling in autism spectrum disorders: bacterial VOCs and related metabolic pathways acting as disease biomarkers and predictors

in Systems Microbiology

Pamela Vernocchi
Chiara Marangelo
Silvia Guerrera
Federica Del Chierico
Valerio Guarrasi
Simone Gardini
Federica Conte
Paola Paci
Gianluca Ianiro
Antonio Gasbarrini

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1287350

8,023 views
7 citations

Original Research

Published on 15 Dec 2023

Rumen and fecal microbiomes are related to diet and production traits in Bos indicus beef cattle

in Systems Microbiology

Liliane Costa Conteville
Juliana Virginio da Silva
Bruno Gabriel Nascimento Andrade
Tainã Figueiredo Cardoso
Jennifer Jessica Bruscadin
Priscila Silva Neubern de Oliveira
Gerson Barreto Mourão
Luiz Lehmann Coutinho
Julio Cesar Pascale Palhares
Alexandre Berndt

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1282851

7,629 views
20 citations

Technology and Code

Published on 14 Dec 2023

Automating methods for estimating metabolite volatility

in Systems Microbiology

Laura K. Meredith
S. Marshall Ledford
Kristina Riemer
Parker Geffre
Kelsey Graves
Linnea K. Honeker
David LeBauer
Malak M. Tfaily
Jordan Krechmer

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1267234

4,289 views
6 citations

Original Research

Published on 14 Dec 2023

An efficient model for predicting human diseases through miRNA based on multiple-types of contrastive learning

in Systems Microbiology

Qingquan Liao
Xiangzheng Fu
Linlin Zhuo
Hao Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1325001

2,053 views
2 citations

Original Research

Published on 12 Dec 2023

Uncovering a causal connection between the Lachnoclostridium genus in fecal microbiota and non-alcoholic fatty liver disease: a two-sample Mendelian randomization analysis

in Systems Microbiology

Wanhui Dai
Dandong Cai
Shuai Zhou
Ang Li
Jinsong Xie
Jie Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1276790

7,707 views
20 citations

Original Research

Published on 07 Dec 2023

Marvels of Bacilli in soil amendment for plant-growth promotion toward sustainable development having futuristic socio-economic implications

in Systems Microbiology

Meenakshi Mukhopadhyay
Ashutosh Mukherjee
Sayak Ganguli
Archisman Chakraborti
Samrat Roy
Sudeshna Shyam Choudhury
Vetriselvan Subramaniyan
Vinoth Kumarasamy
Amany A. Sayed
Fatma M. El-Demerdash

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1293302

7,017 views
10 citations

Review

Published on 07 Dec 2023

Probiotic and postbiotic analytical methods: a perspective of available enumeration techniques

in Systems Microbiology

Marie-Eve Boyte
Andrzej Benkowski
Marco Pane
Hanan R. Shehata

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1304621

20,268 views
53 citations

Original Research

Published on 06 Dec 2023

CRISPR-Cas systems feature and targeting phages diversity in Lacticaseibacillus rhamnosus strains

in Systems Microbiology

Bahman Panahi
Behnaz Dehganzad
Yousef Nami

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1281307

3,573 views
15 citations

Review

Published on 05 Dec 2023

Application of artificial intelligence approaches to predict the metabolism of xenobiotic molecules by human gut microbiome

in Systems Microbiology

Aditya S. Malwe
Vineet K. Sharma

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1254073

7,700 views
8 citations

1,793 articles

articles

Artificial intelligence-driven microbiome data analysis for estimation of postmortem interval and crime location

Potential effects of specific gut microbiota on periodontal disease: a two-sample bidirectional Mendelian randomization study

Causal relationship between gut microflora and dementia: a Mendelian randomization study

Genetically predicted causality between gut microbiota, blood metabolites, and intracerebral hemorrhage: a bidirectional Mendelian randomization study

Sheep and goat pathogen database: a pathogen data integration and analysis database of sheep and goat infectious diseases

Unveiling Curvularia tuberculata-induced leaf anomalies in Rhododendron ferrugineum: implications in cultural-ecological conservation and harnessing microbial intervention in socio-economic advancement

MDSVDNV: predicting microbe–drug associations by singular value decomposition and Node2vec

Associations of central obesity and habitual food consumption with saliva microbiota and its enzymatic profiles – a pilot study in Finnish children

Editorial: Environments-pathogens-the gut microbiota and host diseases

Editorial: Mapping the exposome and investigating its role in human and environmental health

The impact of transitive annotation on the training of taxonomic classifiers

The cause-and-effect relationship between gut microbiota abundance and carcinoid syndrome: a bidirectional Mendelian randomization study

Metabolic profiling of petroleum-degrading microbial communities incubated under high-pressure conditions

The causal effects between gut microbiota and hemorrhagic stroke: a bidirectional two-sample Mendelian randomization study

Role of gut microbiota and inflammatory factors in acute respiratory distress syndrome: a Mendelian randomization analysis

Gut microbiota functional profiling in autism spectrum disorders: bacterial VOCs and related metabolic pathways acting as disease biomarkers and predictors

Rumen and fecal microbiomes are related to diet and production traits in Bos indicus beef cattle

Automating methods for estimating metabolite volatility

An efficient model for predicting human diseases through miRNA based on multiple-types of contrastive learning

Uncovering a causal connection between the Lachnoclostridium genus in fecal microbiota and non-alcoholic fatty liver disease: a two-sample Mendelian randomization analysis

Marvels of Bacilli in soil amendment for plant-growth promotion toward sustainable development having futuristic socio-economic implications

Probiotic and postbiotic analytical methods: a perspective of available enumeration techniques

CRISPR-Cas systems feature and targeting phages diversity in Lacticaseibacillus rhamnosus strains

Application of artificial intelligence approaches to predict the metabolism of xenobiotic molecules by human gut microbiome