Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 22 Dec 2023

Metabolic profiling of petroleum-degrading microbial communities incubated under high-pressure conditions

in Systems Microbiology

Jinbo Xu
Lu Wang
Weifeng Lv
Xinmin Song
Yong Nie
Xiao-Lei Wu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1305731

4,980 views
8 citations

Original Research

Published on 22 Dec 2023

The causal effects between gut microbiota and hemorrhagic stroke: a bidirectional two-sample Mendelian randomization study

in Systems Microbiology

Yingjie Shen
Hao Liu
Xiangyi Meng
Aili Gao
Yansong Liu
Wei Ma
Hongsheng Liang
Fulan Hu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1290909

5,416 views
12 citations

Original Research

Published on 20 Dec 2023

Role of gut microbiota and inflammatory factors in acute respiratory distress syndrome: a Mendelian randomization analysis

in Systems Microbiology

Jiawei Ma
Zigang Zhu
Yisikandeer Yishajiang
Khaloud Mohammed Alarjani
Lei Hong
Liang Luo

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1294692

5,510 views
13 citations

Original Research

Published on 18 Dec 2023

Gut microbiota functional profiling in autism spectrum disorders: bacterial VOCs and related metabolic pathways acting as disease biomarkers and predictors

in Systems Microbiology

Pamela Vernocchi
Chiara Marangelo
Silvia Guerrera
Federica Del Chierico
Valerio Guarrasi
Simone Gardini
Federica Conte
Paola Paci
Gianluca Ianiro
Antonio Gasbarrini

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1287350

7,617 views
7 citations

Original Research

Published on 15 Dec 2023

Rumen and fecal microbiomes are related to diet and production traits in Bos indicus beef cattle

in Systems Microbiology

Liliane Costa Conteville
Juliana Virginio da Silva
Bruno Gabriel Nascimento Andrade
Tainã Figueiredo Cardoso
Jennifer Jessica Bruscadin
Priscila Silva Neubern de Oliveira
Gerson Barreto Mourão
Luiz Lehmann Coutinho
Julio Cesar Pascale Palhares
Alexandre Berndt

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1282851

7,037 views
17 citations

Technology and Code

Published on 14 Dec 2023

Automating methods for estimating metabolite volatility

in Systems Microbiology

Laura K. Meredith
S. Marshall Ledford
Kristina Riemer
Parker Geffre
Kelsey Graves
Linnea K. Honeker
David LeBauer
Malak M. Tfaily
Jordan Krechmer

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1267234

4,013 views
6 citations

Original Research

Published on 14 Dec 2023

An efficient model for predicting human diseases through miRNA based on multiple-types of contrastive learning

in Systems Microbiology

Qingquan Liao
Xiangzheng Fu
Linlin Zhuo
Hao Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1325001

1,868 views
2 citations

Original Research

Published on 12 Dec 2023

Uncovering a causal connection between the Lachnoclostridium genus in fecal microbiota and non-alcoholic fatty liver disease: a two-sample Mendelian randomization analysis

in Systems Microbiology

Wanhui Dai
Dandong Cai
Shuai Zhou
Ang Li
Jinsong Xie
Jie Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1276790

6,842 views
17 citations

Original Research

Published on 07 Dec 2023

Marvels of Bacilli in soil amendment for plant-growth promotion toward sustainable development having futuristic socio-economic implications

in Systems Microbiology

Meenakshi Mukhopadhyay
Ashutosh Mukherjee
Sayak Ganguli
Archisman Chakraborti
Samrat Roy
Sudeshna Shyam Choudhury
Vetriselvan Subramaniyan
Vinoth Kumarasamy
Amany A. Sayed
Fatma M. El-Demerdash

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1293302

6,606 views
7 citations

Review

Published on 07 Dec 2023

Probiotic and postbiotic analytical methods: a perspective of available enumeration techniques

in Systems Microbiology

Marie-Eve Boyte
Andrzej Benkowski
Marco Pane
Hanan R. Shehata

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1304621

19,104 views
48 citations

Original Research

Published on 06 Dec 2023

CRISPR-Cas systems feature and targeting phages diversity in Lacticaseibacillus rhamnosus strains

in Systems Microbiology

Bahman Panahi
Behnaz Dehganzad
Yousef Nami

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1281307

3,250 views
12 citations

Review

Published on 05 Dec 2023

Application of artificial intelligence approaches to predict the metabolism of xenobiotic molecules by human gut microbiome

in Systems Microbiology

Aditya S. Malwe
Vineet K. Sharma

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1254073

7,224 views
8 citations

Original Research

Published on 04 Dec 2023

Rapid discrimination of Bifidobacterium longum subspecies based on MALDI-TOF MS and machine learning

in Systems Microbiology

Kexin Liu
Yajie Wang
Minlei Zhao
Gaogao Xue
Ailan Wang
Weijie Wang
Lida Xu
Jianguo Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1297451

3,424 views
6 citations

Original Research

Published on 04 Dec 2023

Phenotypic shifts induced by environmental pre-stressors modify antibiotic resistance in Staphylococcus aureus

in Systems Microbiology

Gui Nam Wee
Eun Sun Lyou
Susmita Das Nishu
Tae Kwon Lee

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1304509

2,145 views
2 citations

Original Research

Published on 04 Dec 2023

Insight into the mechanism of gallstone disease by proteomic and metaproteomic characterization of human bile

in Systems Microbiology

Xue-Ting Yang
Jie Wang
Ying-Hua Jiang
Lei Zhang
Ling Du
Jun Li
Feng Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1276951

6,072 views
8 citations

Review

Published on 01 Dec 2023

The interplay between the microbiota, diet and T regulatory cells in the preservation of the gut barrier in inflammatory bowel disease

in Systems Microbiology

Kathryn Prame Kumar
Joshua D. Ooi
Rimma Goldberg

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1291724

5,413 views
22 citations

Review

Published on 30 Nov 2023

Exploring the role of gut microbiota in advancing personalized medicine

in Systems Microbiology

Gouxin Huang
Raees Khan
Yilin Zheng
Ping-Chin Lee
Qingnan Li
Imran Khan

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1274925

11,377 views
27 citations

Original Research

Published on 28 Nov 2023

Agromyces chromiiresistens sp. nov., Novosphingobium album sp. nov., Sphingobium arseniciresistens sp. nov., Sphingomonas pollutisoli sp. nov., and Salinibacterium metalliresistens sp. nov.: five new members of Microbacteriaceae and Sphingomonadaceae from polluted soil

in Systems Microbiology

Ze-Shen Liu
Ke-Huan Wang
Man Cai
Mei-Ling Yang
Xiao-Kang Wang
Hong-Lin Ma
Yi-Han Yuan
Lin-Huan Wu
De-Feng Li
Shuang-Jiang Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1289110

3,719 views
10 citations

Original Research

Published on 23 Nov 2023

Causal effects of gut microbiome on hypertension: a Mendelian randomization study

in Systems Microbiology

Gang He
Yu Cao
Houzhao Wang
Xiaoying Lv

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1276050

5,449 views
4 citations

Original Research

Published on 23 Nov 2023

Causal relationship between gut microbiota and immune thrombocytopenia: a Mendelian randomization study of two samples

in Systems Microbiology

Dongmei Guo
Qian Chen
Guojun Wang
ChunPu Li
FinnGen consortium

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1190866

5,722 views
13 citations

Review

Published on 22 Nov 2023

A toolbox of machine learning software to support microbiome analysis

in Systems Microbiology

Laura Judith Marcos-Zambrano
Víctor Manuel López-Molina
Burcu Bakir-Gungor
Marcus Frohme
Kanita Karaduzovic-Hadziabdic
Thomas Klammsteiner
Eliana Ibrahimi
Leo Lahti
Tatjana Loncar-Turukalo
Xhilda Dhamo

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1250806

21,609 views
25 citations

Original Research

Published on 21 Nov 2023

Developing a multi-epitope vaccine candidate to combat porcine epidemic diarrhea virus and porcine deltacoronavirus co-infection by employing an immunoinformatics approach

in Systems Microbiology

Wei Hou
Heqiong Wu
Wenting Wang
Ruolan Wang
Wang Han
Sibei Wang
Bin Wang
Haidong Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1295678

4,632 views
5 citations

Original Research

Published on 20 Nov 2023

Genome sequencing and metabolic network reconstruction of a novel sulfur-oxidizing bacterium Acidithiobacillus Ameehan

in Systems Microbiology

Peng Wu
Qianqian Yuan
Tingting Cheng
Yifan Han
Wei Zhao
Xiaoping Liao
Lu Wang
Jingyi Cai
Qianqian He
Ying Guo

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1277847

4,597 views
3 citations

Original Research

Published on 17 Nov 2023

Gut microbiota and common gastrointestinal diseases: a bidirectional two-sample Mendelian randomized study

in Systems Microbiology

Binxu Qiu
Zixiong Shen
Dongliang Yang
Xinxin Qin
Wenyong Ren
Quan Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1273269

5,135 views
6 citations

1,781 articles

articles

Metabolic profiling of petroleum-degrading microbial communities incubated under high-pressure conditions

The causal effects between gut microbiota and hemorrhagic stroke: a bidirectional two-sample Mendelian randomization study

Role of gut microbiota and inflammatory factors in acute respiratory distress syndrome: a Mendelian randomization analysis

Gut microbiota functional profiling in autism spectrum disorders: bacterial VOCs and related metabolic pathways acting as disease biomarkers and predictors

Rumen and fecal microbiomes are related to diet and production traits in Bos indicus beef cattle

Automating methods for estimating metabolite volatility

An efficient model for predicting human diseases through miRNA based on multiple-types of contrastive learning

Uncovering a causal connection between the Lachnoclostridium genus in fecal microbiota and non-alcoholic fatty liver disease: a two-sample Mendelian randomization analysis

Marvels of Bacilli in soil amendment for plant-growth promotion toward sustainable development having futuristic socio-economic implications

Probiotic and postbiotic analytical methods: a perspective of available enumeration techniques

CRISPR-Cas systems feature and targeting phages diversity in Lacticaseibacillus rhamnosus strains

Application of artificial intelligence approaches to predict the metabolism of xenobiotic molecules by human gut microbiome

Rapid discrimination of Bifidobacterium longum subspecies based on MALDI-TOF MS and machine learning

Phenotypic shifts induced by environmental pre-stressors modify antibiotic resistance in Staphylococcus aureus

Insight into the mechanism of gallstone disease by proteomic and metaproteomic characterization of human bile

The interplay between the microbiota, diet and T regulatory cells in the preservation of the gut barrier in inflammatory bowel disease

Exploring the role of gut microbiota in advancing personalized medicine

Agromyces chromiiresistens sp. nov., Novosphingobium album sp. nov., Sphingobium arseniciresistens sp. nov., Sphingomonas pollutisoli sp. nov., and Salinibacterium metalliresistens sp. nov.: five new members of Microbacteriaceae and Sphingomonadaceae from polluted soil

Causal effects of gut microbiome on hypertension: a Mendelian randomization study

Causal relationship between gut microbiota and immune thrombocytopenia: a Mendelian randomization study of two samples

A toolbox of machine learning software to support microbiome analysis

Developing a multi-epitope vaccine candidate to combat porcine epidemic diarrhea virus and porcine deltacoronavirus co-infection by employing an immunoinformatics approach

Genome sequencing and metabolic network reconstruction of a novel sulfur-oxidizing bacterium Acidithiobacillus Ameehan

Gut microbiota and common gastrointestinal diseases: a bidirectional two-sample Mendelian randomized study