Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 04 Dec 2023

Rapid discrimination of Bifidobacterium longum subspecies based on MALDI-TOF MS and machine learning

in Systems Microbiology

Kexin Liu
Yajie Wang
Minlei Zhao
Gaogao Xue
Ailan Wang
Weijie Wang
Lida Xu
Jianguo Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1297451

3,698 views
7 citations

Original Research

Published on 04 Dec 2023

Insight into the mechanism of gallstone disease by proteomic and metaproteomic characterization of human bile

in Systems Microbiology

Xue-Ting Yang
Jie Wang
Ying-Hua Jiang
Lei Zhang
Ling Du
Jun Li
Feng Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1276951

6,530 views
10 citations

Original Research

Published on 04 Dec 2023

Phenotypic shifts induced by environmental pre-stressors modify antibiotic resistance in Staphylococcus aureus

in Systems Microbiology

Gui Nam Wee
Eun Sun Lyou
Susmita Das Nishu
Tae Kwon Lee

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1304509

2,378 views
2 citations

Review

Published on 01 Dec 2023

The interplay between the microbiota, diet and T regulatory cells in the preservation of the gut barrier in inflammatory bowel disease

in Systems Microbiology

Kathryn Prame Kumar
Joshua D. Ooi
Rimma Goldberg

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1291724

6,100 views
23 citations

Review

Published on 30 Nov 2023

Exploring the role of gut microbiota in advancing personalized medicine

in Systems Microbiology

Gouxin Huang
Raees Khan
Yilin Zheng
Ping-Chin Lee
Qingnan Li
Imran Khan

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1274925

12,072 views
31 citations

Original Research

Published on 28 Nov 2023

Agromyces chromiiresistens sp. nov., Novosphingobium album sp. nov., Sphingobium arseniciresistens sp. nov., Sphingomonas pollutisoli sp. nov., and Salinibacterium metalliresistens sp. nov.: five new members of Microbacteriaceae and Sphingomonadaceae from polluted soil

in Systems Microbiology

Ze-Shen Liu
Ke-Huan Wang
Man Cai
Mei-Ling Yang
Xiao-Kang Wang
Hong-Lin Ma
Yi-Han Yuan
Lin-Huan Wu
De-Feng Li
Shuang-Jiang Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1289110

4,126 views
11 citations

Original Research

Published on 23 Nov 2023

Causal effects of gut microbiome on hypertension: a Mendelian randomization study

in Systems Microbiology

Gang He
Yu Cao
Houzhao Wang
Xiaoying Lv

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1276050

5,757 views
4 citations

Original Research

Published on 23 Nov 2023

Causal relationship between gut microbiota and immune thrombocytopenia: a Mendelian randomization study of two samples

in Systems Microbiology

Dongmei Guo
Qian Chen
Guojun Wang
ChunPu Li
FinnGen consortium

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1190866

6,002 views
13 citations

Review

Published on 22 Nov 2023

A toolbox of machine learning software to support microbiome analysis

in Systems Microbiology

Laura Judith Marcos-Zambrano
Víctor Manuel López-Molina
Burcu Bakir-Gungor
Marcus Frohme
Kanita Karaduzovic-Hadziabdic
Thomas Klammsteiner
Eliana Ibrahimi
Leo Lahti
Tatjana Loncar-Turukalo
Xhilda Dhamo

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1250806

22,497 views
27 citations

Original Research

Published on 21 Nov 2023

Developing a multi-epitope vaccine candidate to combat porcine epidemic diarrhea virus and porcine deltacoronavirus co-infection by employing an immunoinformatics approach

in Systems Microbiology

Wei Hou
Heqiong Wu
Wenting Wang
Ruolan Wang
Wang Han
Sibei Wang
Bin Wang
Haidong Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1295678

4,947 views
7 citations

Original Research

Published on 20 Nov 2023

Genome sequencing and metabolic network reconstruction of a novel sulfur-oxidizing bacterium Acidithiobacillus Ameehan

in Systems Microbiology

Peng Wu
Qianqian Yuan
Tingting Cheng
Yifan Han
Wei Zhao
Xiaoping Liao
Lu Wang
Jingyi Cai
Qianqian He
Ying Guo

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1277847

5,040 views
4 citations

Original Research

Published on 17 Nov 2023

Gut microbiota and common gastrointestinal diseases: a bidirectional two-sample Mendelian randomized study

in Systems Microbiology

Binxu Qiu
Zixiong Shen
Dongliang Yang
Xinxin Qin
Wenyong Ren
Quan Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1273269

5,339 views
6 citations

Original Research

Published on 15 Nov 2023

Inhibitory mechanism of quercetin on Alicyclobacillus acidoterrestris

in Systems Microbiology

Xinhong Liang
Cunjian Tu
Yongchao Li
Junliang Sun
Ruixiang Zhao
Junjian Ran
Lingxia Jiao
Junchao Huang
Junrui Li

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1286187

3,994 views
15 citations

Original Research

Published on 15 Nov 2023

Causal associations between gut microbiota and primary biliary cholangitis: a bidirectional two-sample Mendelian randomization study

in Systems Microbiology

Jiahao Zhang
Gefeng Wu
Yuhong Tang
Huanxiang Liu
Xinyu Ge
Rui Peng
Jun Cao
Daoyuan Tu
Bingbing Su
Shengjie Jin

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1273024

4,342 views
11 citations

Original Research

Published on 15 Nov 2023

Metagenomic analysis of ecological niche overlap and community collapse in microbiome dynamics

in Systems Microbiology

Hiroaki Fujita
Masayuki Ushio
Kenta Suzuki
Masato S. Abe
Masato Yamamichi
Yusuke Okazaki
Alberto Canarini
Ibuki Hayashi
Keitaro Fukushima
Shinji Fukuda

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1261137

6,041 views
12 citations

Review

Published on 14 Nov 2023

The role and mechanism of TCM in the prevention and treatment of infectious diseases

in Systems Microbiology

Qifei Zou
Yitong Chen
Huanxin Qin
Rui Tang
Taojian Han
Ziyi Guo
Juanjuan Zhao
Delin Xu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1286364

9,155 views
23 citations

Original Research

Published on 14 Nov 2023

Elucidating the causal association between gut microbiota and intrahepatic cholangiocarcinoma through Mendelian randomization analysis

in Systems Microbiology

Zhitao Chen
Weiguang Shi
Kailei Chen
Chicheng Lu
Xinyuan Li
Qiyong Li

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1288525

7,109 views
22 citations

Original Research

Published on 13 Nov 2023

Composition, antibiotic resistance, and virulence analysis of microbiota in dormitory drain pipes

in Systems Microbiology

Yan Hu
Kunyuan Zhang
Nan Li
Shengqin Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1272605

3,035 views
4 citations

Original Research

Published on 10 Nov 2023

Collaborative cytometric inter-laboratory ring test for probiotics quantification

in Systems Microbiology

Peter Lüttge Jordal
Marcos González Diaz
Carlotta Morazzoni
Serena Allesina
Daniele Zogno
Daniela Cattivelli
Serena Galletti
Elena Guidesi
Jean-Pol Warzée
Marco Pane

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1285075

6,932 views
9 citations

Editorial

Published on 10 Nov 2023

Editorial: Microbiomes of art and their importance in preserving cultural heritage

in Systems Microbiology

António Portugal
Xiaobo Liu
Adam Pyzik
João Trovão

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1321133

2,732 views

Review

Published on 03 Nov 2023

Emerging trends and focus of research on the relationship between traumatic brain injury and gut microbiota: a visualized study

in Systems Microbiology

Qiujing Du
Qijie Li
Guangneng Liao
Jiafei Li
Peiling Ye
Qi Zhang
Xiaotong Gong
Jiaju Yang
Ka Li

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1278438

4,263 views
5 citations

Review

Published on 03 Nov 2023

Complex interplay of gut microbiota between obesity and asthma in children

in Systems Microbiology

Mingge Hu
Xiaoman Zhao
Yazun Liu
Huan Zhou
Yannan You
Zheng Xue

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1264356

4,826 views
5 citations

Original Research

Published on 02 Nov 2023

Microbial dark matter sequences verification in amplicon sequencing and environmental metagenomics data

in Systems Microbiology

Hana Barak
Naomi Fuchs
Michal Liddor-Naim
Irit Nir
Alex Sivan
Ariel Kushmaro

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1247119

4,700 views
8 citations

Original Research

Published on 30 Oct 2023

Simulating ozone degradation of deoxynivalenol and its bio-safety assessment by mouse model

in Systems Microbiology

Chao Sun
Fang Yang
Jianhui Xiao
Wenwen Zhou
Jun Li
Xiaolong Gu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1286503

2,750 views
4 citations

1,793 articles

articles

Rapid discrimination of Bifidobacterium longum subspecies based on MALDI-TOF MS and machine learning

Insight into the mechanism of gallstone disease by proteomic and metaproteomic characterization of human bile

Phenotypic shifts induced by environmental pre-stressors modify antibiotic resistance in Staphylococcus aureus

The interplay between the microbiota, diet and T regulatory cells in the preservation of the gut barrier in inflammatory bowel disease

Exploring the role of gut microbiota in advancing personalized medicine

Agromyces chromiiresistens sp. nov., Novosphingobium album sp. nov., Sphingobium arseniciresistens sp. nov., Sphingomonas pollutisoli sp. nov., and Salinibacterium metalliresistens sp. nov.: five new members of Microbacteriaceae and Sphingomonadaceae from polluted soil

Causal effects of gut microbiome on hypertension: a Mendelian randomization study

Causal relationship between gut microbiota and immune thrombocytopenia: a Mendelian randomization study of two samples

A toolbox of machine learning software to support microbiome analysis

Developing a multi-epitope vaccine candidate to combat porcine epidemic diarrhea virus and porcine deltacoronavirus co-infection by employing an immunoinformatics approach

Genome sequencing and metabolic network reconstruction of a novel sulfur-oxidizing bacterium Acidithiobacillus Ameehan

Gut microbiota and common gastrointestinal diseases: a bidirectional two-sample Mendelian randomized study

Inhibitory mechanism of quercetin on Alicyclobacillus acidoterrestris

Causal associations between gut microbiota and primary biliary cholangitis: a bidirectional two-sample Mendelian randomization study

Metagenomic analysis of ecological niche overlap and community collapse in microbiome dynamics

The role and mechanism of TCM in the prevention and treatment of infectious diseases

Elucidating the causal association between gut microbiota and intrahepatic cholangiocarcinoma through Mendelian randomization analysis

Composition, antibiotic resistance, and virulence analysis of microbiota in dormitory drain pipes

Collaborative cytometric inter-laboratory ring test for probiotics quantification

Editorial: Microbiomes of art and their importance in preserving cultural heritage

Emerging trends and focus of research on the relationship between traumatic brain injury and gut microbiota: a visualized study

Complex interplay of gut microbiota between obesity and asthma in children

Microbial dark matter sequences verification in amplicon sequencing and environmental metagenomics data

Simulating ozone degradation of deoxynivalenol and its bio-safety assessment by mouse model