Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 03 Mar 2023

Realizing the value in “non-standard” parts of the qPCR standard curve by integrating fundamentals of quantitative microbiology

in Systems Microbiology

Philip J. Schmidt
Nicole Acosta
Alex H. S. Chik
Patrick M. D’Aoust
Robert Delatolla
Hadi A. Dhiyebi
Melissa B. Glier
Casey R. J. Hubert
Jennifer Kopetzky
Chand S. Mangat

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1048661

7,497 views
14 citations

Original Research

Published on 03 Mar 2023

Fluorescence activated cell sorting and fermentation analysis to study rumen microbiome responses to administered live microbials and yeast cell wall derived prebiotics

in Systems Microbiology

Leeann Klassen
Greta Reintjes
Meiying Li
Long Jin
Carolyn Amundsen
Xiaohui Xing
Lharbi Dridi
Bastien Castagner
Trevor W. Alexander
D. Wade Abbott

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1020250

6,211 views
11 citations

Original Research

Published on 02 Mar 2023

Differences in peripheral and central metabolites and gut microbiome of laying hens with different feather-pecking phenotypes

in Systems Microbiology

Chao Wang
Yaling Li
Haoliang Wang
Miao Li
Jinsheng Rong
Xindi Liao
Yinbao Wu
Yan Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1132866

4,429 views
11 citations

Original Research

Published on 27 Feb 2023

Evaluation of the lignocellulose degradation potential of Mediterranean forests soil microbial communities through diversity and targeted functional metagenomics

in Systems Microbiology

Maria Kalntremtziou
Ioannis A. Papaioannou
Vasileios Vangalis
Elias Polemis
Katherine M. Pappas
Georgios I. Zervakis
Milton A. Typas

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1121993

5,335 views
13 citations

Original Research

Published on 27 Feb 2023

Roles of gut microbiome in epilepsy risk: A Mendelian randomization study

in Systems Microbiology

Youjie Zeng
Si Cao
Heng Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1115014

15,010 views
73 citations

Original Research

Published on 23 Feb 2023

Impact of inorganic iron and haem on the human gut microbiota; An in vitro batch-culture approach

in Systems Microbiology

Andrea Monteagudo-Mera
Arvindkumar Shalunkhe
Amro Duhduh
Gemma E. Walton
Glenn R. Gibson
Dora I. Pereira
Anisha Wijeyesekera
Simon C. Andrews

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1074637

5,573 views
6 citations

Original Research

Published on 22 Feb 2023

Effects of dietary Clostridium butyricum and fructooligosaccharides, alone or in combination, on performance, egg quality, amino acid digestibility, jejunal morphology, immune function, and antioxidant capacity of laying hens

in Systems Microbiology

Uchechukwu Edna Obianwuna
Kai Qiu
Jing Wang
Hai-jun Zhang
Guang-hai Qi
Ling-ling Huang
Shu-geng Wu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1125897

4,021 views
16 citations

Methods

Published on 22 Feb 2023

DeepLBCEPred: A Bi-LSTM and multi-scale CNN-based deep learning method for predicting linear B-cell epitopes

in Systems Microbiology

Yue Qi
Peijie Zheng
Guohua Huang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1117027

2,824 views
11 citations

Editorial

Published on 21 Feb 2023

Editorial: Community series in tools, techniques, and strategies for teaching in a real-world context with microbiology, volume II

in Systems Microbiology

Davida S. Smyth
Nichole A. Broderick
Carlos C. Goller

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1156805

1,804 views

Original Research

Published on 20 Feb 2023

EMDS-7: Environmental microorganism image dataset seventh version for multiple object detection evaluation

in Systems Microbiology

Hechen Yang
Chen Li
Xin Zhao
Bencheng Cai
Jiawei Zhang
Pingli Ma
Peng Zhao
Ao Chen
Tao Jiang
Hongzan Sun

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1084312

5,299 views
10 citations

Review

Published on 17 Feb 2023

Microbial colonization and degradation of marine microplastics in the plastisphere: A review

in Systems Microbiology

Xinyi Zhai
Xiao-Hua Zhang
Min Yu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1127308

39,025 views
169 citations

Original Research

Published on 17 Feb 2023

Exploring taxonomic and functional microbiome of Hawaiian stream and spring irrigation water systems using Illumina and Oxford Nanopore sequencing platforms

in Systems Microbiology

Diksha Klair
Shefali Dobhal
Amjad Ahmad
Zohaib Ul Hassan
Jensen Uyeda
Joshua Silva
Koon-Hui Wang
Seil Kim
Anne M. Alvarez
Mohammad Arif

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1039292

6,690 views
10 citations

Review

Published on 17 Feb 2023

Challenges and opportunities of strain diversity in gut microbiome research

in Systems Microbiology

Benjamin D. Anderson
Jordan E. Bisanz

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1117122

7,247 views
35 citations

Original Research

Published on 16 Feb 2023

Exploring the causal effects of the gut microbiome on serum lipid levels: A two-sample Mendelian randomization analysis

in Systems Microbiology

Gongjie Guo
Yonglin Wu
Yingjian Liu
Zixian Wang
Guifeng Xu
Xipei Wang
Feiqing Liang
Weihua Lai
Xiao Xiao
Qian Zhu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1113334

7,957 views
28 citations

Editorial

Published on 15 Feb 2023

Editorial: Microbial ecology and function of the aquatic systems

in Systems Microbiology

Haihan Zhang
Defeng Xing
Yinhu Wu
Rencun Jin
Di Liu
Peter Deines

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1109221

6,672 views
8 citations

Editorial

Published on 15 Feb 2023

Editorial: Untangle the broad connections and tight interactions between human microbiota and complex diseases through data-driven approaches

in Systems Microbiology

Liang Wang
Zuo-Bin Zhu
Li Zhang
Jian Li
Qi Zhao

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1157579

2,120 views
2 citations

Original Research

Published on 14 Feb 2023

Early flora colonization affects intestinal immunoglobulin G uptake in piglets, which may be mediated by NF-κB-FcRn pathway

in Systems Microbiology

Fang Peng
Haihan Zhang
Xi He
Zehe Song

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1136513

2,536 views
1 citation

Original Research

Published on 13 Feb 2023

Discrimination of psychrophilic enzymes using machine learning algorithms with amino acid composition descriptor

in Systems Microbiology

Ailan Huang
Fuping Lu
Fufeng Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1130594

4,816 views
18 citations

Editorial

Published on 08 Feb 2023

Editorial: Rising stars in systems microbiology: 2021

in Systems Microbiology

Anil Kumar Puniya
Gareth Wyn Griffith
Emilio M. Ungerfeld

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1137550

1,363 views

Review

Published on 07 Feb 2023

Probing transient memory of cellular states using single-cell lineages

in Systems Microbiology

Abhyudai Singh
Michael Saint-Antoine

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1050516

3,785 views
22 citations

Original Research

Published on 03 Feb 2023

A genome-wide cross-cancer meta-analysis highlights the shared genetic links of five solid cancers

in Systems Microbiology

Hongping Guo
Wenhao Cao
Yiran Zhu
Tong Li
Boheng Hu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1116592

4,933 views
8 citations

Original Research

Published on 02 Feb 2023

A bibliometric analysis of the role of microbiota in trauma

in Systems Microbiology

Runzhi Huang
Yuwei Lu
Minghao Jin
Yifan Liu
Mengyi Zhang
Shuyuan Xian
Zhengyan Chang
Lei Wang
Wei Zhang
Jianyu Lu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1091060

4,836 views
6 citations

Editorial

Published on 01 Feb 2023

Editorial: Microbiome and human host interactions and their implications on human health

in Systems Microbiology

Jazleen Leo
Chun Wie Chong
Amadeus Yeremia Pribowo
Richard Sutejo
Jonathan W. J. Lee

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1135341

1,881 views

Mini Review

Published on 01 Feb 2023

Artificial Intelligence in microbiomes analysis: A review of applications in dermatology

in Systems Microbiology

Te Sun
Xueli Niu
Qing He
Fujun Chen
Rui-Qun Qi

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1112010

10,428 views
20 citations

1,781 articles

articles

Realizing the value in “non-standard” parts of the qPCR standard curve by integrating fundamentals of quantitative microbiology

Fluorescence activated cell sorting and fermentation analysis to study rumen microbiome responses to administered live microbials and yeast cell wall derived prebiotics

Differences in peripheral and central metabolites and gut microbiome of laying hens with different feather-pecking phenotypes

Evaluation of the lignocellulose degradation potential of Mediterranean forests soil microbial communities through diversity and targeted functional metagenomics

Roles of gut microbiome in epilepsy risk: A Mendelian randomization study

Impact of inorganic iron and haem on the human gut microbiota; An in vitro batch-culture approach

Effects of dietary Clostridium butyricum and fructooligosaccharides, alone or in combination, on performance, egg quality, amino acid digestibility, jejunal morphology, immune function, and antioxidant capacity of laying hens

DeepLBCEPred: A Bi-LSTM and multi-scale CNN-based deep learning method for predicting linear B-cell epitopes

Editorial: Community series in tools, techniques, and strategies for teaching in a real-world context with microbiology, volume II

EMDS-7: Environmental microorganism image dataset seventh version for multiple object detection evaluation

Microbial colonization and degradation of marine microplastics in the plastisphere: A review

Exploring taxonomic and functional microbiome of Hawaiian stream and spring irrigation water systems using Illumina and Oxford Nanopore sequencing platforms

Challenges and opportunities of strain diversity in gut microbiome research

Exploring the causal effects of the gut microbiome on serum lipid levels: A two-sample Mendelian randomization analysis

Editorial: Microbial ecology and function of the aquatic systems

Editorial: Untangle the broad connections and tight interactions between human microbiota and complex diseases through data-driven approaches

Early flora colonization affects intestinal immunoglobulin G uptake in piglets, which may be mediated by NF-κB-FcRn pathway

Discrimination of psychrophilic enzymes using machine learning algorithms with amino acid composition descriptor

Editorial: Rising stars in systems microbiology: 2021

Probing transient memory of cellular states using single-cell lineages

A genome-wide cross-cancer meta-analysis highlights the shared genetic links of five solid cancers

A bibliometric analysis of the role of microbiota in trauma

Editorial: Microbiome and human host interactions and their implications on human health

Artificial Intelligence in microbiomes analysis: A review of applications in dermatology