Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 19 Oct 2022

Multi-omics analyses reveal the specific changes in gut metagenome and serum metabolome of patients with polycystic ovary syndrome

in Systems Microbiology

Zhandong Yang
Huijiao Fu
Huihui Su
Xuzi Cai
Yan Wang
Yanjun Hong
Jing Hu
Zhiyong Xie
Xuefeng Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1017147

10,120 views
33 citations

Editorial

Published on 18 Oct 2022

Editorial: Microbiota and mitochondria: Impact on cell signaling, physiology, and disease

in Systems Microbiology

Dionysios V. Chartoumpekis
Apostolos Zaravinos
Yiorgos Apidianakis
George Lagoumintzis

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1056499

6,545 views
5 citations

Original Research

Published on 14 Oct 2022

Morphologic identification of clinically encountered moulds using a residual neural network

in Systems Microbiology

Ran Jing
Xiang-Long Yin
Xiu-Li Xie
He-Qing Lian
Jin Li
Ge Zhang
Wen-Hang Yang
Tian-Shu Sun
Ying-Chun Xu

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1021236

5,350 views
5 citations

Original Research

Published on 14 Oct 2022

Potential autotrophic carbon-fixer and Fe(II)-oxidizer Alcanivorax sp. MM125-6 isolated from Wocan hydrothermal field

in Systems Microbiology

Mingcong Wei
Xiang Zeng
Xiqiu Han
Zongze Shao
Qian Xie
Chuanqi Dong
Yejian Wang
Zhongyan Qiu

Frontiers in Microbiology

doi 10.3389/fmicb.2022.930601

3,868 views
7 citations

Original Research

Published on 13 Oct 2022

Phenotypic selection during laboratory evolution of yeast populations leads to a genome-wide sustainable chromatin compaction shift

in Systems Microbiology

David F. Moreno
Murat Acar

Frontiers in Microbiology

doi 10.3389/fmicb.2022.974055

3,209 views

Hypothesis and Theory

Published on 12 Oct 2022

Development of a data science CURE in microbiology using publicly available microbiome datasets

in Systems Microbiology

Evelyn Sun
Stephan G. König
Mihai Cirstea
Steven J. Hallam
Marcia L. Graves
David C. Oliver

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1018237

4,865 views
2 citations

Original Research

Published on 11 Oct 2022

“Multilocus sequence analysis for population diversity of indigenous entomopathogenic fungus Beauveria bassiana and its bio-efficacy against the cassava mite, Tetranychus truncatus Ehara (Acari: Tetranychidae)”

in Systems Microbiology

M. Chaithra
T. Prameeladevi
S. N. Bhagyasree
L. Prasad
S. Subramanian
Deeba Kamil

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1007017

4,166 views
6 citations

Review

Published on 10 Oct 2022

Do microbes have a memory? History-dependent behavior in the adaptation to variable environments

in Systems Microbiology

Lieselotte Vermeersch
Lloyd Cool
Anton Gorkovskiy
Karin Voordeckers
Tom Wenseleers
Kevin J. Verstrepen

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1004488

12,800 views
30 citations

Original Research

Published on 06 Oct 2022

Research of cervical microbiota alterations with human papillomavirus infection status and women age in Sanmenxia area of China

in Systems Microbiology

Jintao Hu
Yuhan Wu
Lili Quan
Wenjuan Yang
Jidong Lang
Geng Tian
Bo Meng

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1004664

4,490 views
10 citations

Original Research

Published on 05 Oct 2022

MTDeepM6A-2S: A two-stage multi-task deep learning method for predicting RNA N6-methyladenosine sites of Saccharomyces cerevisiae

in Systems Microbiology

Hong Wang
Shihao Zhao
Yinchu Cheng
Shoudong Bi
Xiaolei Zhu

Frontiers in Microbiology

doi 10.3389/fmicb.2022.999506

3,172 views
5 citations

Original Research

Published on 05 Oct 2022

Characterizing viral within-host diversity in fast and non-equilibrium demo-genetic dynamics

in Systems Microbiology

Maryam Alamil
Gaël Thébaud
Karine Berthier
Samuel Soubeyrand

Frontiers in Microbiology

doi 10.3389/fmicb.2022.983938

2,760 views
1 citation

Original Research

Published on 04 Oct 2022

Multigene phylogeny, phylogenetic network, and morphological characterizations reveal four new arthropod-associated Simplicillium species and their evolutional relationship

in Systems Microbiology

Wanhao Chen
Jiandong Liang
Xiuxiu Ren
Jiehong Zhao
Yanfeng Han
Zongqi Liang

Frontiers in Microbiology

doi 10.3389/fmicb.2022.950773

4,058 views
14 citations

Original Research

Published on 04 Oct 2022

Inference of pan-cancer related genes by orthologs matching based on enhanced LSTM model

in Systems Microbiology

Chao Wang
Houwang Zhang
Haishu Ma
Yawen Wang
Ke Cai
Tingrui Guo
Yuanhang Yang
Zhen Li
Yuan Zhu

Frontiers in Microbiology

doi 10.3389/fmicb.2022.963704

3,640 views
2 citations

Mini Review

Published on 04 Oct 2022

Advances in artificial intelligence-based microbiome for PMI estimation

in Systems Microbiology

Ziwei Wang
Fuyuan Zhang
Linlin Wang
Huiya Yuan
Dawei Guan
Rui Zhao

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1034051

9,998 views
39 citations

Original Research

Published on 03 Oct 2022

Effects of glucose oxidase on growth performance, clinical symptoms, serum parameters, and intestinal health in piglets challenged by enterotoxigenic Escherichia coli

in Systems Microbiology

Weiwei Wang
Ruiyan Xie
Qingyun Cao
Hui Ye
Changming Zhang
Zemin Dong
Dingyuan Feng
Jianjun Zuo

Frontiers in Microbiology

doi 10.3389/fmicb.2022.994151

4,248 views
9 citations

Original Research

Published on 28 Sep 2022

Bitter friends are not always toxic: The loss of acetic acid bacteria and the absence of Komagataeibacter in the gut microbiota of the polyphagous fly Anastrepha ludens could inhibit its development in Psidium guajava in contrast to A. striata and A. fraterculus that flourish in this host

in Systems Microbiology

Manuel Ochoa-Sánchez
Daniel Cerqueda-García
Andrés Moya
Enrique Ibarra-Laclette
Alma Altúzar-Molina
Damaris Desgarennes
Martín Aluja

Frontiers in Microbiology

doi 10.3389/fmicb.2022.979817

5,086 views
12 citations

Original Research

Published on 28 Sep 2022

Integrative analysis of the mouse fecal microbiome and metabolome reveal dynamic phenotypes in the development of colorectal cancer

in Systems Microbiology

Jingjing Liu
Mingyang Qi
Chengchao Qiu
Feng Wang
Shaofei Xie
Jian Zhao
Jing Wu
Xiaofeng Song

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1021325

6,849 views
8 citations

Original Research

Published on 27 Sep 2022

Mixed conifer-broadleaf trees on arbuscular mycorrhizal and ectomycorrhizal communities in rhizosphere soil of different plantation stands in the temperate zone, Northeast China

in Systems Microbiology

Yong Zhang
Qingcheng Wang
Liqing Xu
Shuangjiao Ma
Donghai Cui
Kaiyue Zhu
Wanju Feng

Frontiers in Microbiology

doi 10.3389/fmicb.2022.986515

5,102 views
5 citations

Original Research

Published on 26 Sep 2022

Integrated analysis of the salivary microbiome and metabolome in chronic and aggressive periodontitis: A pilot study

in Systems Microbiology

Yiping Wei
Meng Shi
Yong Nie
Cui Wang
Fei Sun
Wenting Jiang
Wenjie Hu
Xiaolei Wu

Frontiers in Microbiology

doi 10.3389/fmicb.2022.959416

5,888 views
18 citations

Original Research

Published on 26 Sep 2022

Comparison of gut microflora of donkeys in high and low altitude areas

in Systems Microbiology

Rong Guo
Shuer Zhang
Jianxing Chen
Wei Shen
Guoliang Zhang
Junjie Wang
Fali Zhang
Qingjie Pan
Taifeng Xie
Deqiang Ai

Frontiers in Microbiology

doi 10.3389/fmicb.2022.964799

3,514 views
13 citations

Correction

Published on 26 Sep 2022

Corrigendum: Emerging microfluidic technologies for microbiome research

in Systems Microbiology

Yue Yu
Hui Wen
Sihong Li
Haojie Cao
Xuefei Li
Zhixin Ma
Xiaoyi She
Lei Zhou
Shuqiang Huang

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1038682

1,802 views
9 citations

Original Research

Published on 23 Sep 2022

Effect of experimentally increased nutrient availability on the structure, metabolic activities, and potential microbial functions of a maritime Antarctic microbial mat

in Systems Microbiology

Antonio Camacho
Carlos Rochera
Antonio Picazo

Frontiers in Microbiology

doi 10.3389/fmicb.2022.900158

3,615 views
11 citations

Original Research

Published on 23 Sep 2022

Phage-prokaryote coexistence strategy mediates microbial community diversity in the intestine and sediment microhabitats of shrimp culture pond ecosystem

in Systems Microbiology

Zhixuan Deng
Shenzheng Zeng
Renjun Zhou
Dongwei Hou
Shicheng Bao
Linyu Zhang
Qilu Hou
Xuanting Li
Shaoping Weng
Jianguo He

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1011342

3,993 views
9 citations

Original Research

Published on 23 Sep 2022

Identification of methylation signatures and rules for predicting the severity of SARS-CoV-2 infection with machine learning methods

in Systems Microbiology

Zhiyang Liu
Mei Meng
ShiJian Ding
XiaoChao Zhou
KaiYan Feng
Tao Huang
Yu-Dong Cai

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1007295

3,187 views
11 citations

1,788 articles

articles

Multi-omics analyses reveal the specific changes in gut metagenome and serum metabolome of patients with polycystic ovary syndrome

Editorial: Microbiota and mitochondria: Impact on cell signaling, physiology, and disease

Morphologic identification of clinically encountered moulds using a residual neural network

Potential autotrophic carbon-fixer and Fe(II)-oxidizer Alcanivorax sp. MM125-6 isolated from Wocan hydrothermal field

Phenotypic selection during laboratory evolution of yeast populations leads to a genome-wide sustainable chromatin compaction shift

Development of a data science CURE in microbiology using publicly available microbiome datasets

“Multilocus sequence analysis for population diversity of indigenous entomopathogenic fungus Beauveria bassiana and its bio-efficacy against the cassava mite, Tetranychus truncatus Ehara (Acari: Tetranychidae)”

Do microbes have a memory? History-dependent behavior in the adaptation to variable environments

Research of cervical microbiota alterations with human papillomavirus infection status and women age in Sanmenxia area of China

MTDeepM6A-2S: A two-stage multi-task deep learning method for predicting RNA N6-methyladenosine sites of Saccharomyces cerevisiae

Characterizing viral within-host diversity in fast and non-equilibrium demo-genetic dynamics

Multigene phylogeny, phylogenetic network, and morphological characterizations reveal four new arthropod-associated Simplicillium species and their evolutional relationship

Inference of pan-cancer related genes by orthologs matching based on enhanced LSTM model

Advances in artificial intelligence-based microbiome for PMI estimation

Effects of glucose oxidase on growth performance, clinical symptoms, serum parameters, and intestinal health in piglets challenged by enterotoxigenic Escherichia coli

Bitter friends are not always toxic: The loss of acetic acid bacteria and the absence of Komagataeibacter in the gut microbiota of the polyphagous fly Anastrepha ludens could inhibit its development in Psidium guajava in contrast to A. striata and A. fraterculus that flourish in this host

Integrative analysis of the mouse fecal microbiome and metabolome reveal dynamic phenotypes in the development of colorectal cancer

Mixed conifer-broadleaf trees on arbuscular mycorrhizal and ectomycorrhizal communities in rhizosphere soil of different plantation stands in the temperate zone, Northeast China

Integrated analysis of the salivary microbiome and metabolome in chronic and aggressive periodontitis: A pilot study

Comparison of gut microflora of donkeys in high and low altitude areas

Corrigendum: Emerging microfluidic technologies for microbiome research

Effect of experimentally increased nutrient availability on the structure, metabolic activities, and potential microbial functions of a maritime Antarctic microbial mat

Phage-prokaryote coexistence strategy mediates microbial community diversity in the intestine and sediment microhabitats of shrimp culture pond ecosystem

Identification of methylation signatures and rules for predicting the severity of SARS-CoV-2 infection with machine learning methods