Frontiers in Microbiology | Systems Microbiology

Review

Published on 10 Oct 2022

Do microbes have a memory? History-dependent behavior in the adaptation to variable environments

in Systems Microbiology

Lieselotte Vermeersch
Lloyd Cool
Anton Gorkovskiy
Karin Voordeckers
Tom Wenseleers
Kevin J. Verstrepen

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1004488

12,308 views
30 citations

Original Research

Published on 06 Oct 2022

Research of cervical microbiota alterations with human papillomavirus infection status and women age in Sanmenxia area of China

in Systems Microbiology

Jintao Hu
Yuhan Wu
Lili Quan
Wenjuan Yang
Jidong Lang
Geng Tian
Bo Meng

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1004664

4,284 views
9 citations

Original Research

Published on 05 Oct 2022

Characterizing viral within-host diversity in fast and non-equilibrium demo-genetic dynamics

in Systems Microbiology

Maryam Alamil
Gaël Thébaud
Karine Berthier
Samuel Soubeyrand

Frontiers in Microbiology

doi 10.3389/fmicb.2022.983938

2,628 views
1 citation

Original Research

Published on 05 Oct 2022

MTDeepM6A-2S: A two-stage multi-task deep learning method for predicting RNA N6-methyladenosine sites of Saccharomyces cerevisiae

in Systems Microbiology

Hong Wang
Shihao Zhao
Yinchu Cheng
Shoudong Bi
Xiaolei Zhu

Frontiers in Microbiology

doi 10.3389/fmicb.2022.999506

3,051 views
5 citations

Original Research

Published on 04 Oct 2022

Inference of pan-cancer related genes by orthologs matching based on enhanced LSTM model

in Systems Microbiology

Chao Wang
Houwang Zhang
Haishu Ma
Yawen Wang
Ke Cai
Tingrui Guo
Yuanhang Yang
Zhen Li
Yuan Zhu

Frontiers in Microbiology

doi 10.3389/fmicb.2022.963704

3,413 views
2 citations

Original Research

Published on 04 Oct 2022

Multigene phylogeny, phylogenetic network, and morphological characterizations reveal four new arthropod-associated Simplicillium species and their evolutional relationship

in Systems Microbiology

Wanhao Chen
Jiandong Liang
Xiuxiu Ren
Jiehong Zhao
Yanfeng Han
Zongqi Liang

Frontiers in Microbiology

doi 10.3389/fmicb.2022.950773

3,855 views
14 citations

Mini Review

Published on 04 Oct 2022

Advances in artificial intelligence-based microbiome for PMI estimation

in Systems Microbiology

Ziwei Wang
Fuyuan Zhang
Linlin Wang
Huiya Yuan
Dawei Guan
Rui Zhao

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1034051

9,629 views
39 citations

Original Research

Published on 03 Oct 2022

Effects of glucose oxidase on growth performance, clinical symptoms, serum parameters, and intestinal health in piglets challenged by enterotoxigenic Escherichia coli

in Systems Microbiology

Weiwei Wang
Ruiyan Xie
Qingyun Cao
Hui Ye
Changming Zhang
Zemin Dong
Dingyuan Feng
Jianjun Zuo

Frontiers in Microbiology

doi 10.3389/fmicb.2022.994151

4,030 views
9 citations

Original Research

Published on 28 Sep 2022

Bitter friends are not always toxic: The loss of acetic acid bacteria and the absence of Komagataeibacter in the gut microbiota of the polyphagous fly Anastrepha ludens could inhibit its development in Psidium guajava in contrast to A. striata and A. fraterculus that flourish in this host

in Systems Microbiology

Manuel Ochoa-Sánchez
Daniel Cerqueda-García
Andrés Moya
Enrique Ibarra-Laclette
Alma Altúzar-Molina
Damaris Desgarennes
Martín Aluja

Frontiers in Microbiology

doi 10.3389/fmicb.2022.979817

4,896 views
12 citations

Original Research

Published on 28 Sep 2022

Integrative analysis of the mouse fecal microbiome and metabolome reveal dynamic phenotypes in the development of colorectal cancer

in Systems Microbiology

Jingjing Liu
Mingyang Qi
Chengchao Qiu
Feng Wang
Shaofei Xie
Jian Zhao
Jing Wu
Xiaofeng Song

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1021325

6,666 views
7 citations

Original Research

Published on 27 Sep 2022

Mixed conifer-broadleaf trees on arbuscular mycorrhizal and ectomycorrhizal communities in rhizosphere soil of different plantation stands in the temperate zone, Northeast China

in Systems Microbiology

Yong Zhang
Qingcheng Wang
Liqing Xu
Shuangjiao Ma
Donghai Cui
Kaiyue Zhu
Wanju Feng

Frontiers in Microbiology

doi 10.3389/fmicb.2022.986515

4,898 views
5 citations

Original Research

Published on 26 Sep 2022

Integrated analysis of the salivary microbiome and metabolome in chronic and aggressive periodontitis: A pilot study

in Systems Microbiology

Yiping Wei
Meng Shi
Yong Nie
Cui Wang
Fei Sun
Wenting Jiang
Wenjie Hu
Xiaolei Wu

Frontiers in Microbiology

doi 10.3389/fmicb.2022.959416

5,626 views
16 citations

Correction

Published on 26 Sep 2022

Corrigendum: Emerging microfluidic technologies for microbiome research

in Systems Microbiology

Yue Yu
Hui Wen
Sihong Li
Haojie Cao
Xuefei Li
Zhixin Ma
Xiaoyi She
Lei Zhou
Shuqiang Huang

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1038682

1,695 views
8 citations

Original Research

Published on 26 Sep 2022

Comparison of gut microflora of donkeys in high and low altitude areas

in Systems Microbiology

Rong Guo
Shuer Zhang
Jianxing Chen
Wei Shen
Guoliang Zhang
Junjie Wang
Fali Zhang
Qingjie Pan
Taifeng Xie
Deqiang Ai

Frontiers in Microbiology

doi 10.3389/fmicb.2022.964799

3,380 views
12 citations

Original Research

Published on 23 Sep 2022

Phage-prokaryote coexistence strategy mediates microbial community diversity in the intestine and sediment microhabitats of shrimp culture pond ecosystem

in Systems Microbiology

Zhixuan Deng
Shenzheng Zeng
Renjun Zhou
Dongwei Hou
Shicheng Bao
Linyu Zhang
Qilu Hou
Xuanting Li
Shaoping Weng
Jianguo He

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1011342

3,853 views
9 citations

Original Research

Published on 23 Sep 2022

Identification of methylation signatures and rules for predicting the severity of SARS-CoV-2 infection with machine learning methods

in Systems Microbiology

Zhiyang Liu
Mei Meng
ShiJian Ding
XiaoChao Zhou
KaiYan Feng
Tao Huang
Yu-Dong Cai

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1007295

3,039 views
11 citations

Original Research

Published on 23 Sep 2022

Effect of experimentally increased nutrient availability on the structure, metabolic activities, and potential microbial functions of a maritime Antarctic microbial mat

in Systems Microbiology

Antonio Camacho
Carlos Rochera
Antonio Picazo

Frontiers in Microbiology

doi 10.3389/fmicb.2022.900158

3,389 views
11 citations

Original Research

Published on 23 Sep 2022

Metabolomic and metagenomic analyses of the Chinese mitten crab Eriocheir sinensis after challenge with Metschnikowia bicuspidata

in Systems Microbiology

Hongbo Jiang
Jie Bao
Yuenan Xing
Gangnan Cao
Xiaodong Li
Qijun Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2022.990737

4,638 views
14 citations

Original Research

Published on 23 Sep 2022

Analysis of CT scan images for COVID-19 pneumonia based on a deep ensemble framework with DenseNet, Swin transformer, and RegNet

in Systems Microbiology

Lihong Peng
Chang Wang
Geng Tian
Guangyi Liu
Gan Li
Yuankang Lu
Jialiang Yang
Min Chen
Zejun Li

Frontiers in Microbiology

doi 10.3389/fmicb.2022.995323

6,087 views
34 citations

Original Research

Published on 23 Sep 2022

Analysis of pit latrine microbiota reveals depth-related variation in composition, and key parameters and taxa associated with latrine fill-up rate

in Systems Microbiology

Umer Zeeshan Ijaz
Ozan Gundogdu
Ciara Keating
Miriam van Eekert
Walter Gibson
Julian Parkhill
Faraji Abilahi
Benard Liseki
Viet-Anh Nguyen
Steven Sudgen

Frontiers in Microbiology

doi 10.3389/fmicb.2022.960747

4,971 views
9 citations

Original Research

Published on 21 Sep 2022

The gas production, ruminal fermentation parameters, and microbiota in response to Clostridium butyricum supplementation on in vitro varying with media pH levels

in Systems Microbiology

Meimei Zhang
Gege Liang
Xinlong Zhang
Xiaotan Lu
Siyao Li
Xu Wang
Wenzhu Yang
Yuan Yuan
Peixin Jiao

Frontiers in Microbiology

doi 10.3389/fmicb.2022.960623

4,052 views
12 citations

Review

Published on 20 Sep 2022

Gut microbiome and microbial metabolites in NAFLD and after bariatric surgery: Correlation and causality

in Systems Microbiology

Yi Xia
Mengting Ren
Jinpu Yang
Changzhou Cai
Weixin Cheng
Xinxin Zhou
Dan Lu
Feng Ji

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1003755

9,254 views
37 citations

Original Research

Published on 16 Sep 2022

Bacterial biomarkers capable of identifying recurrence or metastasis carry disease severity information for lung cancer

in Systems Microbiology

Xuelian Yuan
Zhina Wang
Changjun Li
Kebo Lv
Geng Tian
Min Tang
Lei Ji
Jialiang Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2022.1007831

4,363 views
33 citations

Original Research

Published on 15 Sep 2022

Identifying shared genetic loci between coronavirus disease 2019 and cardiovascular diseases based on cross-trait meta-analysis

in Systems Microbiology

Hongping Guo
Tong Li
Haiyang Wen

Frontiers in Microbiology

doi 10.3389/fmicb.2022.993933

4,728 views
10 citations

1,781 articles

articles

Do microbes have a memory? History-dependent behavior in the adaptation to variable environments

Research of cervical microbiota alterations with human papillomavirus infection status and women age in Sanmenxia area of China

Characterizing viral within-host diversity in fast and non-equilibrium demo-genetic dynamics

MTDeepM6A-2S: A two-stage multi-task deep learning method for predicting RNA N6-methyladenosine sites of Saccharomyces cerevisiae

Inference of pan-cancer related genes by orthologs matching based on enhanced LSTM model

Multigene phylogeny, phylogenetic network, and morphological characterizations reveal four new arthropod-associated Simplicillium species and their evolutional relationship

Advances in artificial intelligence-based microbiome for PMI estimation

Effects of glucose oxidase on growth performance, clinical symptoms, serum parameters, and intestinal health in piglets challenged by enterotoxigenic Escherichia coli

Bitter friends are not always toxic: The loss of acetic acid bacteria and the absence of Komagataeibacter in the gut microbiota of the polyphagous fly Anastrepha ludens could inhibit its development in Psidium guajava in contrast to A. striata and A. fraterculus that flourish in this host

Integrative analysis of the mouse fecal microbiome and metabolome reveal dynamic phenotypes in the development of colorectal cancer

Mixed conifer-broadleaf trees on arbuscular mycorrhizal and ectomycorrhizal communities in rhizosphere soil of different plantation stands in the temperate zone, Northeast China

Integrated analysis of the salivary microbiome and metabolome in chronic and aggressive periodontitis: A pilot study

Corrigendum: Emerging microfluidic technologies for microbiome research

Comparison of gut microflora of donkeys in high and low altitude areas

Phage-prokaryote coexistence strategy mediates microbial community diversity in the intestine and sediment microhabitats of shrimp culture pond ecosystem

Identification of methylation signatures and rules for predicting the severity of SARS-CoV-2 infection with machine learning methods

Effect of experimentally increased nutrient availability on the structure, metabolic activities, and potential microbial functions of a maritime Antarctic microbial mat

Metabolomic and metagenomic analyses of the Chinese mitten crab Eriocheir sinensis after challenge with Metschnikowia bicuspidata

Analysis of CT scan images for COVID-19 pneumonia based on a deep ensemble framework with DenseNet, Swin transformer, and RegNet

Analysis of pit latrine microbiota reveals depth-related variation in composition, and key parameters and taxa associated with latrine fill-up rate

The gas production, ruminal fermentation parameters, and microbiota in response to Clostridium butyricum supplementation on in vitro varying with media pH levels

Gut microbiome and microbial metabolites in NAFLD and after bariatric surgery: Correlation and causality

Bacterial biomarkers capable of identifying recurrence or metastasis carry disease severity information for lung cancer

Identifying shared genetic loci between coronavirus disease 2019 and cardiovascular diseases based on cross-trait meta-analysis