Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 17 Sep 2021

Deep Investigating the Changes of Gut Microbiome and Its Correlation With the Shifts of Host Serum Metabolome Around Parturition in Sows

in Systems Microbiology

Hao Fu
Maozhang He
Jinyuan Wu
Yunyan Zhou
Shanlin Ke
Zhe Chen
Qin Liu
Min Liu
Hui Jiang
Lusheng Huang

Frontiers in Microbiology

doi 10.3389/fmicb.2021.729039

6,870 views
12 citations

Original Research

Published on 17 Sep 2021

Combined Untargeted and Targeted Metabolomics Approaches Reveal Urinary Changes of Amino Acids and Energy Metabolism in Canine Babesiosis With Different Levels of Kidney Function

in Systems Microbiology

Josipa Kuleš
Ivana Rubić
Blanka Beer Ljubić
Petra Bilić
Renata Barić Rafaj
Mirna Brkljačić
Richard Burchmore
David Eckersall
Vladimir Mrljak

Frontiers in Microbiology

doi 10.3389/fmicb.2021.715701

6,910 views
18 citations

Original Research

Published on 17 Sep 2021

Community Assembly and Co-occurrence Patterns Underlying the Core and Satellite Bacterial Sub-communities in the Tibetan Lakes

in Systems Microbiology

Qi Yan
Jianming Deng
Feng Wang
Yongqin Liu
Keshao Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2021.695465

4,888 views
12 citations

Original Research

Published on 17 Sep 2021

Multivariate Analysis in Microbiome Description: Correlation of Human Gut Protein Degraders, Metabolites, and Predicted Metabolic Functions

in Systems Microbiology

Stefano Raimondi
Rosalba Calvini
Francesco Candeliere
Alan Leonardi
Alessandro Ulrici
Maddalena Rossi
Alberto Amaretti

Frontiers in Microbiology

doi 10.3389/fmicb.2021.723479

8,801 views
23 citations

Original Research

Published on 16 Sep 2021

Appendectomy Is Associated With Alteration of Human Gut Bacterial and Fungal Communities

in Systems Microbiology

Shuntian Cai
Yanyun Fan
Bangzhou Zhang
Jinzhou Lin
Xiaoning Yang
Yunpeng Liu
Jingjing Liu
Jianlin Ren
Hongzhi Xu

Frontiers in Microbiology

doi 10.3389/fmicb.2021.724980

37,589 views
52 citations

Original Research

Published on 16 Sep 2021

Effect of Methane Inhibitors on Ruminal Microbiota During Early Life and Its Relationship With Ruminal Metabolism and Growth in Calves

in Systems Microbiology

Omar Cristobal-Carballo
Susan A. McCoard
Adrian L. Cookson
Siva Ganesh
Katherine Lowe
Richard A. Laven
Stefan Muetzel

Frontiers in Microbiology

doi 10.3389/fmicb.2021.710914

7,262 views
19 citations

Original Research

Published on 13 Sep 2021

Synergistic and Offset Effects of Fungal Species Combinations on Plant Performance

in Systems Microbiology

Yoshie Hori
Hiroaki Fujita
Kei Hiruma
Kazuhiko Narisawa
Hirokazu Toju

Frontiers in Microbiology

doi 10.3389/fmicb.2021.713180

6,104 views
18 citations

Original Research

Published on 10 Sep 2021

Breeding Strategy Shapes the Composition of Bacterial Communities in Female Nile Tilapia Reared in a Recirculating Aquaculture System

in Systems Microbiology

Yousri Abdelhafiz
Jorge M. O. Fernandes
Simone Larger
Davide Albanese
Claudio Donati
Omid Jafari
Artem V. Nedoluzhko
Viswanath Kiron

Frontiers in Microbiology

doi 10.3389/fmicb.2021.709611

5,350 views
4 citations

Original Research

Published on 07 Sep 2021

Contrasting Vaginal Bacterial Communities Between Estrus and Non-estrus of Giant Pandas (Ailuropoda melanoleuca)

in Systems Microbiology

Chanjuan Yue
Xue Luo
Xiaoping Ma
Dongsheng Zhang
Xia Yan
Zeshuai Deng
Yunli Li
Yuliang Liu
Junhui An
Xueyang Fan

Frontiers in Microbiology

doi 10.3389/fmicb.2021.707548

4,631 views
7 citations

Original Research

Published on 31 Aug 2021

RNA-Based Analysis Reveals High Diversity of Plant-Associated Active Fungi in the Atmosphere

in Systems Microbiology

Yan Chen
Xishen Zhu
Ziqiong Hou
Yi Wang
Yunying Zhou
Ling Wang
Lin Liu
Jingrong Duan
Sauban Musa Jibril
Chengyun Li

Frontiers in Microbiology

doi 10.3389/fmicb.2021.683266

3,326 views
5 citations

Original Research

Published on 27 Aug 2021

Enhanced Recovery of Microbial Genes and Genomes From a Marine Water Column Using Long-Read Metagenomics

in Systems Microbiology

Jose M. Haro-Moreno
Mario López-Pérez
Francisco Rodriguez-Valera

Frontiers in Microbiology

doi 10.3389/fmicb.2021.708782

11,030 views
39 citations

Original Research

Published on 26 Aug 2021

Mucosal Microbiota and Metabolome in the Ileum of Hu Sheep Offered a Low-Grain, Pelleted or Non-pelleted High-Grain Diet

in Systems Microbiology

Ruiyang Zhang
Zhiqiang Zhong
Huiting Ma
Limei Lin
Fei Xie
Shengyong Mao
David M. Irwin
Zhe Wang
Shuyi Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2021.718884

4,630 views
9 citations

Original Research

Published on 26 Aug 2021

Brazilian Semi-Arid Mangroves-Associated Microbiome as Pools of Richness and Complexity in a Changing World

in Systems Microbiology

Tallita Cruz Lopes Tavares
Walderly Melgaço Bezerra
Leonardo Ribeiro Oliveira Normando
Alexandre Soares Rosado
Vânia Maria Maciel Melo

Frontiers in Microbiology

doi 10.3389/fmicb.2021.715991

7,467 views
32 citations

Original Research

Published on 26 Aug 2021

Altered Fecal Microbiome and Metabolome in a Mouse Model of Choroidal Neovascularization

in Systems Microbiology

Yun Li
Yuting Cai
Qian Huang
Wei Tan
Bingyan Li
Haixiang Zhou
Zicong Wang
Jingling Zou
Chun Ding
Bing Jiang

Frontiers in Microbiology

doi 10.3389/fmicb.2021.738796

8,004 views
20 citations

Original Research

Published on 25 Aug 2021

Elevated Systemic and Intestinal Inflammatory Response Are Associated With Gut Microbiome Disorder After Cardiovascular Surgery

in Systems Microbiology

Xiong Xia
Jiangjin Ni
Shengnan Yin
Zhipeng Yang
Haini Jiang
Chao Wang
Jian Peng
Hongkui Wei
Xingyu Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2021.686648

4,414 views
20 citations

Original Research

Published on 25 Aug 2021

Discovering Potential Taxonomic Biomarkers of Type 2 Diabetes From Human Gut Microbiota via Different Feature Selection Methods

in Systems Microbiology

Burcu Bakir-Gungor
Osman Bulut
Amhar Jabeer
O. Ufuk Nalbantoglu
Malik Yousef

Frontiers in Microbiology

doi 10.3389/fmicb.2021.628426

8,942 views
28 citations

Methods

Published on 25 Aug 2021

A Novel Network-Based Algorithm for Predicting Protein-Protein Interactions Using Gene Ontology

in Systems Microbiology

Lun Hu
Xiaojuan Wang
Yu-An Huang
Pengwei Hu
Zhu-Hong You

Frontiers in Microbiology

doi 10.3389/fmicb.2021.735329

3,287 views
19 citations

Original Research

Published on 23 Aug 2021

Prediction of Minimal Inhibitory Concentration of Meropenem Against Klebsiella pneumoniae Using Metagenomic Data

in Systems Microbiology

Rundong Tan
Anqi Yu
Ziming Liu
Ziqi Liu
Rongfeng Jiang
Xiaoli Wang
Jialin Liu
Junhui Gao
Xinjun Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2021.712886

7,381 views
8 citations

Original Research

Published on 20 Aug 2021

Evaluating the Assembly Dynamics in the Human Vaginal Microbiomes With Niche-Neutral Hybrid Modeling

in Systems Microbiology

Zhanshan (Sam) Ma

Frontiers in Microbiology

doi 10.3389/fmicb.2021.699939

2,682 views
2 citations

Perspective

Published on 19 Aug 2021

Spatially Resolved Immunometabolism to Understand Infectious Disease Progression

in Systems Microbiology

Roel Tans
Shoumit Dey
Nidhi Sharma Dey
Grant Calder
Peter O’Toole
Paul M. Kaye
Ron M. A. Heeren

Frontiers in Microbiology

doi 10.3389/fmicb.2021.709728

7,292 views
11 citations

Original Research

Published on 19 Aug 2021

Gut and Vagina Microbiota Associated With Estrus Return of Weaning Sows and Its Correlation With the Changes in Serum Metabolites

in Systems Microbiology

Jia Zhang
Min Liu
Shanlin Ke
Xiaochang Huang
Shaoming Fang
Maozhang He
Hao Fu
Congying Chen
Lusheng Huang

Frontiers in Microbiology

doi 10.3389/fmicb.2021.690091

8,214 views
30 citations

Original Research

Published on 19 Aug 2021

Development and Validation of a Nomogram for the Prediction of Hospital Mortality of Patients With Encephalopathy Caused by Microbial Infection: A Retrospective Cohort Study

in Systems Microbiology

Lina Zhao
Yun Li
Yunying Wang
Qian Gao
Zengzheng Ge
Xibo Sun
Yi Li

Frontiers in Microbiology

doi 10.3389/fmicb.2021.737066

4,502 views
21 citations

Original Research

Published on 18 Aug 2021

The Influence of Cesarean Section on the Composition and Development of Gut Microbiota During the First 3 Months of Life

in Systems Microbiology

Gao Long
Yuting Hu
Enfu Tao
Bo Chen
Xiaoli Shu
Wei Zheng
Mizu Jiang

Frontiers in Microbiology

doi 10.3389/fmicb.2021.691312

14,454 views
22 citations

Technology and Code

Published on 17 Aug 2021

DAnIEL: A User-Friendly Web Server for Fungal ITS Amplicon Sequencing Data

in Systems Microbiology

Daniel Loos
Lu Zhang
Christine Beemelmanns
Oliver Kurzai
Gianni Panagiotou

Frontiers in Microbiology

doi 10.3389/fmicb.2021.720513

8,784 views
16 citations

1,789 articles

articles

Deep Investigating the Changes of Gut Microbiome and Its Correlation With the Shifts of Host Serum Metabolome Around Parturition in Sows

Combined Untargeted and Targeted Metabolomics Approaches Reveal Urinary Changes of Amino Acids and Energy Metabolism in Canine Babesiosis With Different Levels of Kidney Function

Community Assembly and Co-occurrence Patterns Underlying the Core and Satellite Bacterial Sub-communities in the Tibetan Lakes

Multivariate Analysis in Microbiome Description: Correlation of Human Gut Protein Degraders, Metabolites, and Predicted Metabolic Functions

Appendectomy Is Associated With Alteration of Human Gut Bacterial and Fungal Communities

Effect of Methane Inhibitors on Ruminal Microbiota During Early Life and Its Relationship With Ruminal Metabolism and Growth in Calves

Synergistic and Offset Effects of Fungal Species Combinations on Plant Performance

Breeding Strategy Shapes the Composition of Bacterial Communities in Female Nile Tilapia Reared in a Recirculating Aquaculture System

Contrasting Vaginal Bacterial Communities Between Estrus and Non-estrus of Giant Pandas (Ailuropoda melanoleuca)

RNA-Based Analysis Reveals High Diversity of Plant-Associated Active Fungi in the Atmosphere

Enhanced Recovery of Microbial Genes and Genomes From a Marine Water Column Using Long-Read Metagenomics

Mucosal Microbiota and Metabolome in the Ileum of Hu Sheep Offered a Low-Grain, Pelleted or Non-pelleted High-Grain Diet

Brazilian Semi-Arid Mangroves-Associated Microbiome as Pools of Richness and Complexity in a Changing World

Altered Fecal Microbiome and Metabolome in a Mouse Model of Choroidal Neovascularization

Elevated Systemic and Intestinal Inflammatory Response Are Associated With Gut Microbiome Disorder After Cardiovascular Surgery

Discovering Potential Taxonomic Biomarkers of Type 2 Diabetes From Human Gut Microbiota via Different Feature Selection Methods

A Novel Network-Based Algorithm for Predicting Protein-Protein Interactions Using Gene Ontology

Prediction of Minimal Inhibitory Concentration of Meropenem Against Klebsiella pneumoniae Using Metagenomic Data

Evaluating the Assembly Dynamics in the Human Vaginal Microbiomes With Niche-Neutral Hybrid Modeling

Spatially Resolved Immunometabolism to Understand Infectious Disease Progression

Gut and Vagina Microbiota Associated With Estrus Return of Weaning Sows and Its Correlation With the Changes in Serum Metabolites

Development and Validation of a Nomogram for the Prediction of Hospital Mortality of Patients With Encephalopathy Caused by Microbial Infection: A Retrospective Cohort Study

The Influence of Cesarean Section on the Composition and Development of Gut Microbiota During the First 3 Months of Life

DAnIEL: A User-Friendly Web Server for Fungal ITS Amplicon Sequencing Data