Frontiers in Microbiology | Systems Microbiology

Perspective

Published on 07 Apr 2021

Real-World Ethical Dilemmas in Laboratory Safety for Microbiology Under-Resourced and Outreach Teaching

in Systems Microbiology

Beverly L. Smith-Keiling

Frontiers in Microbiology

doi 10.3389/fmicb.2021.589569

10,637 views
5 citations

Original Research

Published on 07 Apr 2021

Infant Feeding Alters the Longitudinal Impact of Birth Mode on the Development of the Gut Microbiota in the First Year of Life

in Systems Microbiology

Modupe O. Coker
Hannah E. Laue
Anne G. Hoen
Margaret Hilliard
Erika Dade
Zhigang Li
Thomas Palys
Hilary G. Morrison
Emily Baker
Margaret R. Karagas

Frontiers in Microbiology

doi 10.3389/fmicb.2021.642197

13,941 views
63 citations

Original Research

Published on 06 Apr 2021

Stability Assessment of the Rumen Bacterial and Archaeal Communities in Dairy Cows Within a Single Lactation and Its Association With Host Phenotype

in Systems Microbiology

Zhigang Zhu
Gareth Frank Difford
Samantha Joan Noel
Jan Lassen
Peter Løvendahl
Ole Højberg

Frontiers in Microbiology

doi 10.3389/fmicb.2021.636223

5,460 views
16 citations

Methods

Published on 01 Apr 2021

An Inductive Logistic Matrix Factorization Model for Predicting Drug-Metabolite Association With Vicus Regularization

in Systems Microbiology

Yuanyuan Ma
Lifang Liu
Qianjun Chen
Yingjun Ma

Frontiers in Microbiology

doi 10.3389/fmicb.2021.650366

3,955 views
3 citations

Review

Published on 30 Mar 2021

The Lichens’ Microbiota, Still a Mystery?

in Systems Microbiology

Maria Grimm
Martin Grube
Ulf Schiefelbein
Daniela Zühlke
Jörg Bernhardt
Katharina Riedel

Frontiers in Microbiology

doi 10.3389/fmicb.2021.623839

59,063 views
174 citations

Methods

Published on 24 Mar 2021

Comparison of Methods for Picking the Operational Taxonomic Units From Amplicon Sequences

in Systems Microbiology

Ze-Gang Wei
Xiao-Dan Zhang
Ming Cao
Fei Liu
Yu Qian
Shao-Wu Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2021.644012

15,708 views
35 citations

Original Research

Published on 23 Mar 2021

Weaning Age Affects the Development of the Ruminal Bacterial and Archaeal Community in Hu Lambs During Early Life

in Systems Microbiology

Huiling Mao
Yanfang Zhang
Yan Yun
Wenwen Ji
Zhao Jin
Chong Wang
Zhongtang Yu

Frontiers in Microbiology

doi 10.3389/fmicb.2021.636865

4,956 views
16 citations

Review

Published on 19 Mar 2021

Carbonic Anhydrases: New Perspectives on Protein Functional Role and Inhibition in Helicobacter pylori

in Systems Microbiology

Cristina Campestre
Viviana De Luca
Simone Carradori
Rossella Grande
Vincenzo Carginale
Andrea Scaloni
Claudiu T. Supuran
Clemente Capasso

Frontiers in Microbiology

doi 10.3389/fmicb.2021.629163

11,670 views
63 citations

Original Research

Published on 19 Mar 2021

Yeast Culture Improves Egg Quality and Reproductive Performance of Aged Breeder Layers by Regulating Gut Microbes

in Systems Microbiology

Yuchen Liu
Xue Cheng
Wenrui Zhen
Dan Zeng
Lujiang Qu
Zhong Wang
Zhonghua Ning

Frontiers in Microbiology

doi 10.3389/fmicb.2021.633276

7,807 views
42 citations

Original Research

Published on 17 Mar 2021

Higher Abundance of Sediment Methanogens and Methanotrophs Do Not Predict the Atmospheric Methane and Carbon Dioxide Flows in Eutrophic Tropical Freshwater Reservoirs

in Systems Microbiology

Gabrielle Maria Fonseca Pierangeli
Mercia Regina Domingues
Tatiane Araujo de Jesus
Lúcia Helena Gomes Coelho
Werner Siegfried Hanisch
Marcelo Luiz Martins Pompêo
Flávia Talarico Saia
Gustavo Bueno Gregoracci
Roseli Frederigi Benassi

Frontiers in Microbiology

doi 10.3389/fmicb.2021.647921

7,313 views
27 citations

Original Research

Published on 17 Mar 2021

Specific Microbial Taxa and Functional Capacity Contribute to Chicken Abdominal Fat Deposition

in Systems Microbiology

Hai Xiang
Jiankang Gan
Daoshu Zeng
Jing Li
Hui Yu
Haiquan Zhao
Ying Yang
Shuwen Tan
Gen Li
Chaowei Luo

Frontiers in Microbiology

doi 10.3389/fmicb.2021.643025

8,304 views
50 citations

Original Research

Published on 16 Mar 2021

Finding Colon Cancer- and Colorectal Cancer-Related Microbes Based on Microbe–Disease Association Prediction

in Systems Microbiology

Yu Chen
Hongjian Sun
Mengzhe Sun
Changguo Shi
Hongmei Sun
Xiaoli Shi
Binbin Ji
Jinpeng Cui

Frontiers in Microbiology

doi 10.3389/fmicb.2021.650056

3,118 views
1 citation

Review

Published on 16 Mar 2021

Modulation of Gene Expression in Actinobacteria by Translational Modification of Transcriptional Factors and Secondary Metabolite Biosynthetic Enzymes

in Systems Microbiology

Juan F. Martín
Paloma Liras
Sergio Sánchez

Frontiers in Microbiology

doi 10.3389/fmicb.2021.630694

8,756 views
18 citations

Original Research

Published on 15 Mar 2021

Bioprospecting of Soil-Derived Actinobacteria Along the Alar-Hotan Desert Highway in the Taklamakan Desert

in Systems Microbiology

Shaowei Liu
Ting Wang
Qinpei Lu
Feina Li
Gang Wu
Zhongke Jiang
Xugela Habden
Lin Liu
Xiaolin Zhang
Dmitry A. Lukianov

Frontiers in Microbiology

doi 10.3389/fmicb.2021.604999

8,640 views
21 citations

Review

Published on 15 Mar 2021

Role of the Gastric Microbiome in Gastric Cancer: From Carcinogenesis to Treatment

in Systems Microbiology

Jinpu Yang
Xinxin Zhou
Xiaosun Liu
Zongxin Ling
Feng Ji

Frontiers in Microbiology

doi 10.3389/fmicb.2021.641322

23,436 views
110 citations

Original Research

Published on 11 Mar 2021

Age Matters: Community Assembly in the Pig Fecal Microbiome in the First Month of Life

in Systems Microbiology

Stephanie D. Jurburg
Alex Bossers

Frontiers in Microbiology

doi 10.3389/fmicb.2021.564408

4,722 views
19 citations

Methods

Published on 08 Mar 2021

Leveraging Curation Among Escherichia coli Pathway/Genome Databases Using Ortholog-Based Annotation Propagation

in Systems Microbiology

Suzanne Paley
Ingrid M. Keseler
Markus Krummenacker
Peter D. Karp

Frontiers in Microbiology

doi 10.3389/fmicb.2021.614355

4,100 views
4 citations

Perspective

Published on 04 Mar 2021

Blogging as a Tool for Real-Time Learning in Medical Microbiology

in Systems Microbiology

Charmaine Lloyd

Frontiers in Microbiology

doi 10.3389/fmicb.2021.576145

4,006 views
2 citations

Original Research

Published on 04 Mar 2021

The Rumen Bacterial Community in Dairy Cows Is Correlated to Production Traits During Freshening Period

in Systems Microbiology

Shuai Huang
Shoukun Ji
Garret Suen
Feiran Wang
Shengli Li

Frontiers in Microbiology

doi 10.3389/fmicb.2021.630605

7,967 views
39 citations

Original Research

Published on 01 Mar 2021

Impact of Oseltamivir Treatment on Influenza A and B Virus Dynamics in Human Volunteers

in Systems Microbiology

Kyla L. Hooker
Vitaly V. Ganusov

Frontiers in Microbiology

doi 10.3389/fmicb.2021.631211

16,355 views
14 citations

Original Research

Published on 25 Feb 2021

Effects of Xylo-Oligosaccharides on Growth and Gut Microbiota as Potential Replacements for Antibiotic in Weaning Piglets

in Systems Microbiology

Yuxia Chen
Yining Xie
Ruqing Zhong
Lei Liu
Changguang Lin
Lin Xiao
Liang Chen
Hongfu Zhang
Yves Beckers
Nadia Everaert

Frontiers in Microbiology

doi 10.3389/fmicb.2021.641172

8,659 views
71 citations

Original Research

Published on 25 Feb 2021

Chemotranscriptomic Profiling Defines Drug-Specific Signatures of the Glycopeptide Antibiotics Dalbavancin, Vancomycin and Chlorobiphenyl-Vancomycin in a VanB-Type-Resistant Streptomycete

in Systems Microbiology

Andy Hesketh
Giselda Bucca
Colin P. Smith
Hee-Jeon Hong

Frontiers in Microbiology

doi 10.3389/fmicb.2021.641756

5,173 views
3 citations

Original Research

Published on 25 Feb 2021

Reverse Microbiomics: A New Reverse Dysbiosis Analysis Strategy and Its Usage in Prediction of Autoantigens and Virulent Factors in Dysbiotic Gut Microbiomes From Rheumatoid Arthritis Patients

in Systems Microbiology

Haihe Wang
Edison Ong
John Y. Kao
Duxin Sun
Yongqun He

Frontiers in Microbiology

doi 10.3389/fmicb.2021.633732

8,558 views
13 citations

Original Research

Published on 22 Feb 2021

Supplemental Xylooligosaccharide Modulates Intestinal Mucosal Barrier and Cecal Microbiota in Laying Hens Fed Oxidized Fish Oil

in Systems Microbiology

Jian-min Zhou
Hai-jun Zhang
Shu-geng Wu
Kai Qiu
Yu Fu
Guang-hai Qi
Jing Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2021.635333

6,857 views
28 citations

1,790 articles

articles

Real-World Ethical Dilemmas in Laboratory Safety for Microbiology Under-Resourced and Outreach Teaching

Infant Feeding Alters the Longitudinal Impact of Birth Mode on the Development of the Gut Microbiota in the First Year of Life

Stability Assessment of the Rumen Bacterial and Archaeal Communities in Dairy Cows Within a Single Lactation and Its Association With Host Phenotype

An Inductive Logistic Matrix Factorization Model for Predicting Drug-Metabolite Association With Vicus Regularization

The Lichens’ Microbiota, Still a Mystery?

Comparison of Methods for Picking the Operational Taxonomic Units From Amplicon Sequences

Weaning Age Affects the Development of the Ruminal Bacterial and Archaeal Community in Hu Lambs During Early Life

Carbonic Anhydrases: New Perspectives on Protein Functional Role and Inhibition in Helicobacter pylori

Yeast Culture Improves Egg Quality and Reproductive Performance of Aged Breeder Layers by Regulating Gut Microbes

Higher Abundance of Sediment Methanogens and Methanotrophs Do Not Predict the Atmospheric Methane and Carbon Dioxide Flows in Eutrophic Tropical Freshwater Reservoirs

Specific Microbial Taxa and Functional Capacity Contribute to Chicken Abdominal Fat Deposition

Finding Colon Cancer- and Colorectal Cancer-Related Microbes Based on Microbe–Disease Association Prediction

Modulation of Gene Expression in Actinobacteria by Translational Modification of Transcriptional Factors and Secondary Metabolite Biosynthetic Enzymes

Bioprospecting of Soil-Derived Actinobacteria Along the Alar-Hotan Desert Highway in the Taklamakan Desert

Role of the Gastric Microbiome in Gastric Cancer: From Carcinogenesis to Treatment

Age Matters: Community Assembly in the Pig Fecal Microbiome in the First Month of Life

Leveraging Curation Among Escherichia coli Pathway/Genome Databases Using Ortholog-Based Annotation Propagation

Blogging as a Tool for Real-Time Learning in Medical Microbiology

The Rumen Bacterial Community in Dairy Cows Is Correlated to Production Traits During Freshening Period

Impact of Oseltamivir Treatment on Influenza A and B Virus Dynamics in Human Volunteers

Effects of Xylo-Oligosaccharides on Growth and Gut Microbiota as Potential Replacements for Antibiotic in Weaning Piglets

Chemotranscriptomic Profiling Defines Drug-Specific Signatures of the Glycopeptide Antibiotics Dalbavancin, Vancomycin and Chlorobiphenyl-Vancomycin in a VanB-Type-Resistant Streptomycete

Reverse Microbiomics: A New Reverse Dysbiosis Analysis Strategy and Its Usage in Prediction of Autoantigens and Virulent Factors in Dysbiotic Gut Microbiomes From Rheumatoid Arthritis Patients

Supplemental Xylooligosaccharide Modulates Intestinal Mucosal Barrier and Cecal Microbiota in Laying Hens Fed Oxidized Fish Oil