Frontiers in Microbiology | Systems Microbiology

Review

Published on 30 Oct 2020

Recent Understanding of Soil Acidobacteria and Their Ecological Significance: A Critical Review

in Systems Microbiology

Sadaf Kalam
Anirban Basu
Iqbal Ahmad
R. Z. Sayyed
Hesham Ali El-Enshasy
Daniel Joe Dailin
Ni Luh Suriani

Frontiers in Microbiology

doi 10.3389/fmicb.2020.580024

43,396 views
668 citations

Original Research

Published on 27 Oct 2020

Gene Regulatory Networks of Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 Inferred by a Computational Biology Approach

in Systems Microbiology

Alexandre Rafael Lenz
Edgardo Galán-Vásquez
Eduardo Balbinot
Fernanda Pessi de Abreu
Nikael Souza de Oliveira
Letícia Osório da Rosa
Scheila de Avila e Silva
Marli Camassola
Aldo José Pinheiro Dillon
Ernesto Perez-Rueda

Frontiers in Microbiology

doi 10.3389/fmicb.2020.588263

6,547 views
15 citations

Original Research

Published on 27 Oct 2020

RNMFMDA: A Microbe-Disease Association Identification Method Based on Reliable Negative Sample Selection and Logistic Matrix Factorization With Neighborhood Regularization

in Systems Microbiology

Lihong Peng
Ling Shen
Longjie Liao
Guangyi Liu
Liqian Zhou

Frontiers in Microbiology

doi 10.3389/fmicb.2020.592430

3,647 views
28 citations

Original Research

Published on 26 Oct 2020

Tibetan Sheep Adapt to Plant Phenology in Alpine Meadows by Changing Rumen Microbial Community Structure and Function

in Systems Microbiology

Hongjin Liu
Linyong Hu
Xueping Han
Na Zhao
Tianwei Xu
Li Ma
Xungang Wang
Xiaoling Zhang
Shengping Kang
Xinquan Zhao

Frontiers in Microbiology

doi 10.3389/fmicb.2020.587558

6,227 views
43 citations

Original Research

Published on 23 Oct 2020

Environmental Nutrients Alter Bacterial and Fungal Gut Microbiomes in the Common Meadow Katydid, Orchelimum vulgare

in Systems Microbiology

Melani Muratore
Yvonne Sun
Chelse Prather

Frontiers in Microbiology

doi 10.3389/fmicb.2020.557980

4,624 views
11 citations

Original Research

Published on 23 Oct 2020

Interpretations of Environmental Microbial Community Studies Are Biased by the Selected 16S rRNA (Gene) Amplicon Sequencing Pipeline

in Systems Microbiology

Daniel Straub
Nia Blackwell
Adrian Langarica-Fuentes
Alexander Peltzer
Sven Nahnsen
Sara Kleindienst

Frontiers in Microbiology

doi 10.3389/fmicb.2020.550420

37,734 views
309 citations

Original Research

Published on 22 Oct 2020

Effect of Heat-Inactivated Compound Probiotics on Growth Performance, Plasma Biochemical Indices, and Cecal Microbiome in Yellow-Feathered Broilers

in Systems Microbiology

Cui Zhu
Li Gong
Kaiyong Huang
Fangjun Li
Diqing Tong
Huihua Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2020.585623

8,341 views
53 citations

Methods

Published on 22 Oct 2020

There’re CRISPRs in My Yogurt: A Discovery-Based CURE at the Intersection of Industrial Food Production and the Human Microbiome

in Systems Microbiology

Katherine L. Petrie

Frontiers in Microbiology

doi 10.3389/fmicb.2020.578737

16,876 views
4 citations

Review

Published on 20 Oct 2020

The Russian Doll Model: How Bacteria Shape Successful and Sustainable Inter-Kingdom Relationships

in Systems Microbiology

Enrica Pessione

Frontiers in Microbiology

doi 10.3389/fmicb.2020.573759

8,002 views
10 citations

Original Research

Published on 16 Oct 2020

Screening of Microbes Associated With Swine Growth and Fat Deposition Traits Across the Intestinal Tract

in Systems Microbiology

Shi Tang
Ying Xin
Yunlong Ma
Xuewen Xu
Shuhong Zhao
Jianhua Cao

Frontiers in Microbiology

doi 10.3389/fmicb.2020.586776

9,867 views
78 citations

Original Research

Published on 16 Oct 2020

RETRACTED: Deciphering the Urinary Microbiota Repertoire by Culturomics Reveals Mostly Anaerobic Bacteria From the Gut

in Systems Microbiology

Grégory Dubourg
Aurélie Morand
Fatima Mekhalif
Raphael Godefroy
Alice Corthier
Abdourahamane Yacouba
Ami Diakite
Florent Cornu
Marina Cresci
Samy Brahimi

Frontiers in Microbiology

doi 10.3389/fmicb.2020.513305

15,109 views
58 citations

Original Research

Published on 15 Oct 2020

MicroMundo Upside Down: Targeted Searching for Antibiotics-Producing Bacteria From Soil With Reverse Antibiosis Approaches

in Systems Microbiology

María Alvarado
Pilar Clemente-Casares
Diego A. Moreno
Piet W. J. de Groot

Frontiers in Microbiology

doi 10.3389/fmicb.2020.577550

6,846 views
6 citations

Original Research

Published on 15 Oct 2020

Relationship Between the Fatty Acid Profiles and Gut Bacterial Communities of the Chinese Mitten Crab (Eriocheir sinensis) From Ecologically Different Habitats

in Systems Microbiology

Shengyan Su
Brian Pelekelo Munganga
Fukuan Du
Juhua Yu
Jianlin Li
Fan Yu
Meiyao Wang
Xinjin He
Xinyuan Li
Raouf Bouzoualegh

Frontiers in Microbiology

doi 10.3389/fmicb.2020.565267

6,679 views
22 citations

Original Research

Published on 09 Oct 2020

Rapid Identification of Vibrio Species of the Harveyi Clade Using MALDI-TOF MS Profiling With Main Spectral Profile Database Implemented With an In-House Database: Luvibase

in Systems Microbiology

Julia Mougin
Christophe Flahaut
Roxane Roquigny
Maryse Bonnin-Jusserand
Thierry Grard
Cédric Le Bris

Frontiers in Microbiology

doi 10.3389/fmicb.2020.586536

6,562 views
21 citations

Original Research

Published on 08 Oct 2020

Gut Microbiological Disorders Reduce Semen Utilization Rate in Duroc Boars

in Systems Microbiology

Liangliang Guo
Yinghui Wu
Chao Wang
Hongkui Wei
Jiajian Tan
Haiqing Sun
Siwen Jiang
Jian Peng

Frontiers in Microbiology

doi 10.3389/fmicb.2020.581926

6,298 views
23 citations

Mini Review

Published on 07 Oct 2020

To the Land and Beyond: Crab Microbiomes as a Paradigm for the Evolution of Terrestrialization

in Systems Microbiology

Stefano Cannicci
Sara Fratini
Niccolò Meriggi
Giovanni Bacci
Alessio Iannucci
Alessio Mengoni
Duccio Cavalieri

Frontiers in Microbiology

doi 10.3389/fmicb.2020.575372

7,261 views
15 citations

Methods

Published on 06 Oct 2020

Microbiomic Analysis on Low Abundant Respiratory Biomass Samples; Improved Recovery of Microbial DNA From Bronchoalveolar Lavage Fluid

in Systems Microbiology

Montserrat Saladié
Jose Antonio Caparrós-Martín
Patricia Agudelo-Romero
Peter A. B. Wark
Stephen M. Stick
Fergal O’Gara

Frontiers in Microbiology

doi 10.3389/fmicb.2020.572504

8,631 views
32 citations

Original Research

Published on 02 Oct 2020

Dynamics of Mammalian Cell Infection by Trypanosoma cruzi trypomastigotes

in Systems Microbiology

Jorge A. Arias-del-Angel
Rebeca G. Manning-Cela
Moisés Santillán

Frontiers in Microbiology

doi 10.3389/fmicb.2020.559660

3,812 views
4 citations

Mini Review

Published on 30 Sep 2020

Symbiont-Mediated Insecticide Detoxification as an Emerging Problem in Insect Pests

in Systems Microbiology

Alison G. Blanton
Brittany F. Peterson

Frontiers in Microbiology

doi 10.3389/fmicb.2020.547108

10,310 views
61 citations

Original Research

Published on 29 Sep 2020

Metagenomic Insights Into the Effects of Rare-Earth Elements Supplementation on Rumen Digestibility and Meat Quality of Beef Cattle

in Systems Microbiology

Lanjiao Xu
Luhua Wen
Yu Ge
Gen Wan
Mingren Qu
Fuguang Xue

Frontiers in Microbiology

doi 10.3389/fmicb.2020.01933

4,320 views
10 citations

Original Research

Published on 24 Sep 2020

Cross Inoculation of Rumen Fluid to Improve Dry Matter Disappearance and Its Effect on Bacterial Composition Using an in vitro Batch Culture Model

in Systems Microbiology

Katie McDermott
Michael R. F. Lee
Kenneth J. McDowall
Henry M. R. Greathead

Frontiers in Microbiology

doi 10.3389/fmicb.2020.531404

4,402 views
5 citations

Original Research

Published on 24 Sep 2020

T4SE-XGB: Interpretable Sequence-Based Prediction of Type IV Secreted Effectors Using eXtreme Gradient Boosting Algorithm

in Systems Microbiology

Tianhang Chen
Xiangeng Wang
Yanyi Chu
Yanjing Wang
Mingming Jiang
Dong-Qing Wei
Yi Xiong

Frontiers in Microbiology

doi 10.3389/fmicb.2020.580382

8,003 views
40 citations

Original Research

Published on 22 Sep 2020

Modeling Competitive Mixtures With the Lotka-Volterra Framework for More Complex Fitness Assessment Between Strains

in Systems Microbiology

Afonso Dimas Martins
Erida Gjini

Frontiers in Microbiology

doi 10.3389/fmicb.2020.572487

8,545 views
9 citations

Original Research

Published on 18 Sep 2020

Pipeline for Targeted Meta-Proteomic Analyses to Assess the Diversity of Cattle Rumen Microbial Urease

in Systems Microbiology

Xiaoyin Zhang
Shengguo Zhao
Yue He
Nan Zheng
Xianghua Yan
Jiaqi Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2020.573414

4,215 views
9 citations

1,790 articles

articles

Recent Understanding of Soil Acidobacteria and Their Ecological Significance: A Critical Review

Gene Regulatory Networks of Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 Inferred by a Computational Biology Approach

RNMFMDA: A Microbe-Disease Association Identification Method Based on Reliable Negative Sample Selection and Logistic Matrix Factorization With Neighborhood Regularization

Tibetan Sheep Adapt to Plant Phenology in Alpine Meadows by Changing Rumen Microbial Community Structure and Function

Environmental Nutrients Alter Bacterial and Fungal Gut Microbiomes in the Common Meadow Katydid, Orchelimum vulgare

Interpretations of Environmental Microbial Community Studies Are Biased by the Selected 16S rRNA (Gene) Amplicon Sequencing Pipeline

Effect of Heat-Inactivated Compound Probiotics on Growth Performance, Plasma Biochemical Indices, and Cecal Microbiome in Yellow-Feathered Broilers

There’re CRISPRs in My Yogurt: A Discovery-Based CURE at the Intersection of Industrial Food Production and the Human Microbiome

The Russian Doll Model: How Bacteria Shape Successful and Sustainable Inter-Kingdom Relationships

Screening of Microbes Associated With Swine Growth and Fat Deposition Traits Across the Intestinal Tract

RETRACTED: Deciphering the Urinary Microbiota Repertoire by Culturomics Reveals Mostly Anaerobic Bacteria From the Gut

MicroMundo Upside Down: Targeted Searching for Antibiotics-Producing Bacteria From Soil With Reverse Antibiosis Approaches

Relationship Between the Fatty Acid Profiles and Gut Bacterial Communities of the Chinese Mitten Crab (Eriocheir sinensis) From Ecologically Different Habitats

Rapid Identification of Vibrio Species of the Harveyi Clade Using MALDI-TOF MS Profiling With Main Spectral Profile Database Implemented With an In-House Database: Luvibase

Gut Microbiological Disorders Reduce Semen Utilization Rate in Duroc Boars

To the Land and Beyond: Crab Microbiomes as a Paradigm for the Evolution of Terrestrialization

Microbiomic Analysis on Low Abundant Respiratory Biomass Samples; Improved Recovery of Microbial DNA From Bronchoalveolar Lavage Fluid

Dynamics of Mammalian Cell Infection by Trypanosoma cruzi trypomastigotes

Symbiont-Mediated Insecticide Detoxification as an Emerging Problem in Insect Pests

Metagenomic Insights Into the Effects of Rare-Earth Elements Supplementation on Rumen Digestibility and Meat Quality of Beef Cattle

Cross Inoculation of Rumen Fluid to Improve Dry Matter Disappearance and Its Effect on Bacterial Composition Using an in vitro Batch Culture Model

T4SE-XGB: Interpretable Sequence-Based Prediction of Type IV Secreted Effectors Using eXtreme Gradient Boosting Algorithm

Modeling Competitive Mixtures With the Lotka-Volterra Framework for More Complex Fitness Assessment Between Strains

Pipeline for Targeted Meta-Proteomic Analyses to Assess the Diversity of Cattle Rumen Microbial Urease