Frontiers in Microbiology | Systems Microbiology

Methods

Published on 07 Aug 2019

Accurate and Strict Identification of Probiotic Species Based on Coverage of Whole-Metagenome Shotgun Sequencing Data

in Systems Microbiology

Donghyeok Seol
So Yun Jhang
Hyaekang Kim
Se-Young Kim
Hyo-Sun Kwak
Soon Han Kim
Woojung Lee
Sewook Park
Heebal Kim
Seoae Cho

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01683

10,878 views
24 citations

Original Research

Published on 06 Aug 2019

Continuous Adaptive Evolution of a Fast-Growing Corynebacterium glutamicum Strain Independent of Protocatechuate

in Systems Microbiology

Michaela Graf
Thorsten Haas
Felix Müller
Anina Buchmann
Julia Harm-Bekbenbetova
Andreas Freund
Alexander Nieß
Marcus Persicke
Jörn Kalinowski
Bastian Blombach

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01648

8,641 views
29 citations

Original Research

Published on 02 Aug 2019

Characteristics of the Salivary Microbiota in Patients With Various Digestive Tract Cancers

in Systems Microbiology

Shinya Kageyama
Toru Takeshita
Kenji Takeuchi
Mikari Asakawa
Rie Matsumi
Michiko Furuta
Yukie Shibata
Kiyoshi Nagai
Masahiko Ikebe
Masaru Morita

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01780

12,922 views
89 citations

Original Research

Published on 31 Jul 2019

Pretreatment With Bacillus cereus Preserves Against D-Galactosamine-Induced Liver Injury in a Rat Model

in Systems Microbiology

Ya-Ting Li
Jian-Zhong Ye
Long-Xian Lv
Hong Xu
Li-Ya Yang
Xian-Wan Jiang
Wen-Rui Wu
Ding Shi
Dai-Qiong Fang
Xiao-Yuan Bian

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01751

5,667 views
18 citations

Original Research

Published on 30 Jul 2019

Fecal Metaproteomic Analysis Reveals Unique Changes of the Gut Microbiome Functions After Consumption of Sourdough Carasau Bread

in Systems Microbiology

Marcello Abbondio
Antonio Palomba
Alessandro Tanca
Cristina Fraumene
Daniela Pagnozzi
Monica Serra
Fabio Marongiu
Ezio Laconi
Sergio Uzzau

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01733

11,751 views
33 citations

Original Research

Published on 30 Jul 2019

Microbiota in Human Periodontal Abscess Revealed by 16S rDNA Sequencing

in Systems Microbiology

Jiazhen Chen
Xingwen Wu
Danting Zhu
Meng Xu
Youcheng Yu
Liying Yu
Wenhong Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01723

12,391 views
19 citations

Original Research

Published on 30 Jul 2019

Comparative Analyses of Fecal Microbiota in European Mouflon (Ovis orientalis musimon) and Blue Sheep (Pseudois nayaur) Living at Low or High Altitudes

in Systems Microbiology

Guolei Sun
Honghai Zhang
Qinguo Wei
Chao Zhao
Xiufeng Yang
Xiaoyang Wu
Tian Xia
Guangshuai Liu
Lei Zhang
Ying Gao

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01735

6,485 views
54 citations

Correction

Published on 29 Jul 2019

Corrigendum: Long-Term Encapsulated Nitrate Supplementation Modulates Rumen Microbial Diversity and Rumen Fermentation to Reduce Methane Emission in Grazing Steers

in Systems Microbiology

Yury Tatiana Granja-Salcedo
Rodolfo Maciel Fernandes
Rafael Canonenco de Araujo
Luciano Takeshi Kishi
Telma Teresinha Berchielli
Flávio Dutra de Resende
Alexandre Berndt
Gustavo Rezende Siqueira

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01732

2,224 views
6 citations

Original Research

Published on 24 Jul 2019

Supplemental Plant Extracts From Flos lonicerae in Combination With Baikal skullcap Attenuate Intestinal Disruption and Modulate Gut Microbiota in Laying Hens Challenged by Salmonella pullorum

in Systems Microbiology

Wei-wei Wang
Hong-jie Jia
Hai-jun Zhang
Jing Wang
Hui-yuan Lv
Shu-geng Wu
Guang-hai Qi

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01681

8,775 views
80 citations

Original Research

Published on 24 Jul 2019

A Novel Animal Model for Regional Microbial Dysbiosis of the Pioneer Microbial Community

in Systems Microbiology

Nilusha Malmuthuge
Philip J. Griebel

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01706

4,198 views
5 citations

Original Research

Published on 17 Jul 2019

Fecal and Mucosal Microbiota Profiling in Irritable Bowel Syndrome and Inflammatory Bowel Disease

in Systems Microbiology

Alessandra Lo Presti
Francesca Zorzi
Federica Del Chierico
Annamaria Altomare
Silvia Cocca
Alessandra Avola
Fabiola De Biasio
Alessandra Russo
Eleonora Cella
Sofia Reddel

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01655

24,239 views
205 citations

Original Research

Published on 10 Jul 2019

Longitudinal Survey of Fungi in the Human Gut: ITS Profiling, Phenotyping, and Colonization

in Systems Microbiology

Stefano Raimondi
Alberto Amaretti
Caterina Gozzoli
Marta Simone
Lucia Righini
Francesco Candeliere
Paola Brun
Andrea Ardizzoni
Bruna Colombari
Simona Paulone

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01575

17,746 views
136 citations

Original Research

Published on 10 Jul 2019

RWHMDA: Random Walk on Hypergraph for Microbe-Disease Association Prediction

in Systems Microbiology

Ya-Wei Niu
Cun-Quan Qu
Guang-Hui Wang
Gui-Ying Yan

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01578

6,334 views
24 citations

Original Research

Published on 10 Jul 2019

The Seasonal Dynamics and the Influence of Human Activities on Campus Outdoor Microbial Communities

in Systems Microbiology

Chaoyun Chen
Ruiqiao He
Zhangyu Cheng
Maozhen Han
Yuguo Zha
Pengshuo Yang
Qi Yao
Hao Zhou
Chaofang Zhong
Kang Ning

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01579

5,753 views
11 citations

Original Research

Published on 10 Jul 2019

Effects of Hardwood Biochar on Methane Production, Fermentation Characteristics, and the Rumen Microbiota Using Rumen Simulation

in Systems Microbiology

Rebecca Teoh
Eleonora Caro
Devin B. Holman
Stephen Joseph
Sarah J. Meale
Alex V. Chaves

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01534

13,334 views
52 citations

Original Research

Published on 09 Jul 2019

Fecal Microbiota Transplant From Highly Feed Efficient Donors Affects Cecal Physiology and Microbiota in Low- and High-Feed Efficient Chickens

in Systems Microbiology

Barbara U. Metzler-Zebeli
Sina-Catherine Siegerstetter
Elizabeth Magowan
Peadar G. Lawlor
Niamh E. O′Connell
Qendrim Zebeli

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01576

10,012 views
53 citations

Original Research

Published on 03 Jul 2019

Assessing the Hybrid Effects of Neutral and Niche Processes on Gut Microbiome Influenced by HIV Infection

in Systems Microbiology

Guanshu Yin
Yao Xia

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01467

3,131 views
1 citation

Original Research

Published on 26 Jun 2019

The Capacity of the Fecal Microbiota From Malawian Infants to Ferment Resistant Starch

in Systems Microbiology

Yanan Wang
Elissa K. Mortimer
Kondwani G. H. Katundu
Noel Kalanga
Lex E. X. Leong
Geetha L. Gopalsamy
Claus T. Christophersen
Alyson C. Richard
Aravind Shivasami
Guy C. J. Abell

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01459

5,191 views
14 citations

Original Research

Published on 26 Jun 2019

Compositional and Functional Analysis of the Microbiome in Tissue and Saliva of Oral Squamous Cell Carcinoma

in Systems Microbiology

Zhen Zhang
Junjie Yang
Qiang Feng
Bin Chen
Meihui Li
Cheng Liang
Mingyu Li
Zhihui Li
Qin Xu
Lei Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01439

12,977 views
71 citations

Original Research

Published on 25 Jun 2019

Analysis of the Relationship Between the Degree of Dysbiosis in Gut Microbiota and Prognosis at Different Stages of Primary Hepatocellular Carcinoma

in Systems Microbiology

Jiajia Ni
Rong Huang
Huifang Zhou
Xiaoping Xu
Yang Li
Peihua Cao
Kebo Zhong
Mei Ge
Xiaoxia Chen
Baohua Hou

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01458

9,382 views
99 citations

Original Research

Published on 25 Jun 2019

A Purified Anthraquinone-Glycoside Preparation From Rhubarb Ameliorates Type 2 Diabetes Mellitus by Modulating the Gut Microbiota and Reducing Inflammation

in Systems Microbiology

Hong-Xin Cui
Ling-Shuai Zhang
Yang Luo
Ke Yuan
Zhi-Yong Huang
Ying Guo

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01423

12,809 views
76 citations

Original Research

Published on 25 Jun 2019

The Bacterial and Fungal Microbiota of Nelore Steers Is Dynamic Across the Gastrointestinal Tract and Its Fecal-Associated Microbiota Is Correlated to Feed Efficiency

in Systems Microbiology

Déborah Romaskevis Gomes Lopes
Alex J. La Reau
Márcio de Souza Duarte
Edenio Detmann
Cláudia Braga Pereira Bento
Maria Eugênia Zerlotti Mercadante
Sarah Figueiredo Martins Bonilha
Garret Suen
Hilario Cuquetto Mantovani

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01263

7,321 views
41 citations

Original Research

Published on 25 Jun 2019

Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture

in Systems Microbiology

Chrats Melkonian
Willi Gottstein
Sonja Blasche
Yongkyu Kim
Martin Abel-Kistrup
Hentie Swiegers
Sofie Saerens
Nathalia Edwards
Kiran R. Patil
Bas Teusink

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01347

9,082 views
268 citations

Review

Published on 25 Jun 2019

Gut Microbiota Shapes the Efficiency of Cancer Therapy

in Systems Microbiology

Weidong Ma
Qixing Mao
Wenjie Xia
Gaochao Dong
Changhua Yu
Feng Jiang

Frontiers in Microbiology

doi 10.3389/fmicb.2019.01050

28,158 views
188 citations

1,793 articles

articles

Accurate and Strict Identification of Probiotic Species Based on Coverage of Whole-Metagenome Shotgun Sequencing Data

Continuous Adaptive Evolution of a Fast-Growing Corynebacterium glutamicum Strain Independent of Protocatechuate

Characteristics of the Salivary Microbiota in Patients With Various Digestive Tract Cancers

Pretreatment With Bacillus cereus Preserves Against D-Galactosamine-Induced Liver Injury in a Rat Model

Fecal Metaproteomic Analysis Reveals Unique Changes of the Gut Microbiome Functions After Consumption of Sourdough Carasau Bread

Microbiota in Human Periodontal Abscess Revealed by 16S rDNA Sequencing

Comparative Analyses of Fecal Microbiota in European Mouflon (Ovis orientalis musimon) and Blue Sheep (Pseudois nayaur) Living at Low or High Altitudes

Corrigendum: Long-Term Encapsulated Nitrate Supplementation Modulates Rumen Microbial Diversity and Rumen Fermentation to Reduce Methane Emission in Grazing Steers

Supplemental Plant Extracts From Flos lonicerae in Combination With Baikal skullcap Attenuate Intestinal Disruption and Modulate Gut Microbiota in Laying Hens Challenged by Salmonella pullorum

A Novel Animal Model for Regional Microbial Dysbiosis of the Pioneer Microbial Community

Fecal and Mucosal Microbiota Profiling in Irritable Bowel Syndrome and Inflammatory Bowel Disease

Longitudinal Survey of Fungi in the Human Gut: ITS Profiling, Phenotyping, and Colonization

RWHMDA: Random Walk on Hypergraph for Microbe-Disease Association Prediction

The Seasonal Dynamics and the Influence of Human Activities on Campus Outdoor Microbial Communities

Effects of Hardwood Biochar on Methane Production, Fermentation Characteristics, and the Rumen Microbiota Using Rumen Simulation

Fecal Microbiota Transplant From Highly Feed Efficient Donors Affects Cecal Physiology and Microbiota in Low- and High-Feed Efficient Chickens

Assessing the Hybrid Effects of Neutral and Niche Processes on Gut Microbiome Influenced by HIV Infection

The Capacity of the Fecal Microbiota From Malawian Infants to Ferment Resistant Starch

Compositional and Functional Analysis of the Microbiome in Tissue and Saliva of Oral Squamous Cell Carcinoma

Analysis of the Relationship Between the Degree of Dysbiosis in Gut Microbiota and Prognosis at Different Stages of Primary Hepatocellular Carcinoma

A Purified Anthraquinone-Glycoside Preparation From Rhubarb Ameliorates Type 2 Diabetes Mellitus by Modulating the Gut Microbiota and Reducing Inflammation

The Bacterial and Fungal Microbiota of Nelore Steers Is Dynamic Across the Gastrointestinal Tract and Its Fecal-Associated Microbiota Is Correlated to Feed Efficiency

Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture

Gut Microbiota Shapes the Efficiency of Cancer Therapy