Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 04 Jan 2018

Digital Image Analysis of Yeast Single Cells Growing in Two Different Oxygen Concentrations to Analyze the Population Growth and to Assist Individual-Based Modeling

in Systems Microbiology

Marta Ginovart
Rosa Carbó
Mónica Blanco
Xavier Portell

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02628

13,269 views
18 citations

Original Research

Published on 22 Dec 2017

Uncovering the Potential of Termite Gut Microbiome for Lignocellulose Bioconversion in Anaerobic Batch Bioreactors

in Systems Microbiology

Lucas Auer
Adèle Lazuka
David Sillam-Dussès
Edouard Miambi
Michael O'Donohue
Guillermina Hernandez-Raquet

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02623

20,604 views
90 citations

Original Research

Published on 20 Dec 2017

Comparative Metagenomics of Cellulose- and Poplar Hydrolysate-Degrading Microcosms from Gut Microflora of the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus) after Long-Term Enrichment

in Systems Microbiology

Mabel T. Wong
Weijun Wang
Marie Couturier
Fakhria M. Razeq
Vincent Lombard
Pascal Lapebie
Elizabeth A. Edwards
Nicolas Terrapon
Bernard Henrissat
Emma R. Master

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02504

8,673 views
20 citations

Original Research

Published on 19 Dec 2017

Riemerella anatipestifer Type IX Secretion System Is Required for Virulence and Gelatinase Secretion

in Systems Microbiology

Yunqing Guo
Di Hu
Jie Guo
Tao Wang
Yuncai Xiao
Xiliang Wang
Shaowen Li
Mei Liu
Zili Li
Dingren Bi

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02553

8,625 views
38 citations

Original Research

Published on 18 Dec 2017

Transcriptome Landscape of Mycobacterium smegmatis

in Systems Microbiology

Xinfeng Li
Han Mei
Fang Chen
Qing Tang
Zhaoqing Yu
Xiaojian Cao
Binda T. Andongma
Shan-Ho Chou
Jin He

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02505

12,664 views
59 citations

Original Research

Published on 14 Dec 2017

Modeling Metabolic Interactions in a Consortium of the Infant Gut Microbiome

in Systems Microbiology

Francisco Pinto
Daniel A. Medina
José R. Pérez-Correa
Daniel Garrido

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02507

11,669 views
36 citations

Original Research

Published on 13 Dec 2017

Simulation of Escherichia coli Dynamics in Biofilms and Submerged Colonies with an Individual-Based Model Including Metabolic Network Information

in Systems Microbiology

Ignace L. M. M. Tack
Philippe Nimmegeers
Simen Akkermans
Ihab Hashem
Jan F. M. Van Impe

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02509

6,825 views
27 citations

Original Research

Published on 12 Dec 2017

Rumen Bacteria Communities and Performances of Fattening Lambs with a Lower or Greater Subacute Ruminal Acidosis Risk

in Systems Microbiology

Fei Li
Zhilan Wang
Chunxiao Dong
Fadi Li
Weimin Wang
Zehu Yuan
Futao Mo
Xiuxiu Weng

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02506

9,965 views
60 citations

Original Research

Published on 12 Dec 2017

Development of a Quantitative Loop-Mediated Isothermal Amplification Assay for the Rapid Detection of Novel Goose Parvovirus

in Systems Microbiology

Jing Yang
Hao Chen
Zhenzhong Wang
Xianglong Yu
Xiaoyu Niu
Yi Tang
Youxiang Diao

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02472

7,295 views
24 citations

Original Research

Published on 12 Dec 2017

Analysis of abrB Expression during the Infectious Cycle of Bacillus thuringiensis Reveals Population Heterogeneity

in Systems Microbiology

Samia Ben Rejeb
Didier Lereclus
Leyla Slamti

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02471

4,838 views
11 citations

Original Research

Published on 29 Nov 2017

Comparing the Healthy Nose and Nasopharynx Microbiota Reveals Continuity As Well As Niche-Specificity

in Systems Microbiology

Ilke De Boeck
Stijn Wittouck
Sander Wuyts
Eline F. M. Oerlemans
Marianne F. L. van den Broek
Dieter Vandenheuvel
Olivier Vanderveken
Sarah Lebeer

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02372

17,760 views
121 citations

General Commentary

Published on 29 Nov 2017

Commentary: Proteomics Analysis Revealed that Crosstalk between Helicobacter pylori and Streptococcus mitis May Enhance Bacterial Survival and Reduces Carcinogenesis

in Systems Microbiology

Paweł Krzyżek

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02381

2,845 views
2 citations

Original Research

Published on 28 Nov 2017

Parallelized, Aerobic, Single Carbon-Source Enrichments from Different Natural Environments Contain Divergent Microbial Communities

in Systems Microbiology

Theodore M. Flynn
Jason C. Koval
Stephanie M. Greenwald
Sarah M. Owens
Kenneth M. Kemner
Dionysios A. Antonopoulos

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02321

7,375 views
29 citations

Review

Published on 27 Nov 2017

From Genes to Ecosystems in Microbiology: Modeling Approaches and the Importance of Individuality

in Systems Microbiology

Jan-Ulrich Kreft
Caroline M. Plugge
Clara Prats
Johan H. J. Leveau
Weiwen Zhang
Ferdi L. Hellweger

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02299

11,926 views
48 citations

Original Research

Published on 23 Nov 2017

Wuji Wan Formula Ameliorates Diarrhea and Disordered Colonic Motility in Post-inflammation Irritable Bowel Syndrome Rats by Modulating the Gut Microbiota

in Systems Microbiology

Ying Chen
Shuiming Xiao
Zipeng Gong
Xiaoxin Zhu
Qing Yang
Yujie Li
Shuangrong Gao
Yu Dong
Zhe Shi
Yajie Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02307

10,285 views
43 citations

Original Research

Published on 22 Nov 2017

Taxonomic and Functional Differences between Microbial Communities in Qinghai Lake and Its Input Streams

in Systems Microbiology

Ze Ren
Fang Wang
Xiaodong Qu
James J. Elser
Yang Liu
Limin Chu

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02319

10,266 views
65 citations

Original Research

Published on 17 Nov 2017

Flos Lonicera Combined with Metformin Ameliorates Hepatosteatosis and Glucose Intolerance in Association with Gut Microbiota Modulation

in Systems Microbiology

Na R. Shin
Shambhunath Bose
Jing-Hua Wang
AbuZar Ansari
Soo-Kyoung Lim
Young-won Chin
Han-seok Choi
Hojun Kim

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02271

9,914 views
38 citations

Mini Review

Published on 15 Nov 2017

Microbiome Datasets Are Compositional: And This Is Not Optional

in Systems Microbiology

Gregory B. Gloor
Jean M. Macklaim
Vera Pawlowsky-Glahn
Juan J. Egozcue

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02224

219,335 views
2,614 citations

Original Research

Published on 08 Nov 2017

Metagenomic Analysis of the Gut Microbiome of the Common Black Slug Arion ater in Search of Novel Lignocellulose Degrading Enzymes

in Systems Microbiology

Ryan Joynson
Leighton Pritchard
Ekenakema Osemwekha
Natalie Ferry

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02181

13,162 views
42 citations

Original Research

Published on 07 Nov 2017

Low-Molecular-Weight Chitosan Supplementation Increases the Population of Prevotella in the Cecal Contents of Weanling Pigs

in Systems Microbiology

Ting Yu
Yu Wang
Shicheng Chen
Min Hu
Zhiling Wang
Guozhong Wu
Xianyong Ma
Zhuang Chen
Chuntian Zheng

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02182

5,659 views
35 citations

Methods

Published on 07 Nov 2017

Analysis of Microbiome Data in the Presence of Excess Zeros

in Systems Microbiology

Abhishek Kaul
Siddhartha Mandal
Ori Davidov
Shyamal D. Peddada

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02114

38,748 views
304 citations

Original Research

Published on 07 Nov 2017

Isolation and Characterization of Pseudomonas spp. Strains That Efficiently Decompose Sodium Dodecyl Sulfate

in Systems Microbiology

Ewa M. Furmanczyk
Michal A. Kaminski
Grzegorz Spolnik
Maciej Sojka
Witold Danikiewicz
Andrzej Dziembowski
Leszek Lipinski
Adam Sobczak

Frontiers in Microbiology

doi 10.3389/fmicb.2017.01872

22,438 views
31 citations

Original Research

Published on 07 Nov 2017

Bacillus subtilis Biofilm Development – A Computerized Study of Morphology and Kinetics

in Systems Microbiology

Sarah Gingichashvili
Danielle Duanis-Assaf
Moshe Shemesh
John D. B. Featherstone
Osnat Feuerstein
Doron Steinberg

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02072

22,406 views
34 citations

Original Research

Published on 03 Nov 2017

Camelina Seed Supplementation at Two Dietary Fat Levels Change Ruminal Bacterial Community Composition in a Dual-Flow Continuous Culture System

in Systems Microbiology

Xiaoxia Dai
Paul J. Weimer
Kimberly A. Dill-McFarland
Virginia L. N. Brandao
Garret Suen
Antonio P. Faciola

Frontiers in Microbiology

doi 10.3389/fmicb.2017.02147

5,407 views
20 citations

1,793 articles

articles

Digital Image Analysis of Yeast Single Cells Growing in Two Different Oxygen Concentrations to Analyze the Population Growth and to Assist Individual-Based Modeling

Uncovering the Potential of Termite Gut Microbiome for Lignocellulose Bioconversion in Anaerobic Batch Bioreactors

Comparative Metagenomics of Cellulose- and Poplar Hydrolysate-Degrading Microcosms from Gut Microflora of the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus) after Long-Term Enrichment

Riemerella anatipestifer Type IX Secretion System Is Required for Virulence and Gelatinase Secretion

Transcriptome Landscape of Mycobacterium smegmatis

Modeling Metabolic Interactions in a Consortium of the Infant Gut Microbiome

Simulation of Escherichia coli Dynamics in Biofilms and Submerged Colonies with an Individual-Based Model Including Metabolic Network Information

Rumen Bacteria Communities and Performances of Fattening Lambs with a Lower or Greater Subacute Ruminal Acidosis Risk

Development of a Quantitative Loop-Mediated Isothermal Amplification Assay for the Rapid Detection of Novel Goose Parvovirus

Analysis of abrB Expression during the Infectious Cycle of Bacillus thuringiensis Reveals Population Heterogeneity

Comparing the Healthy Nose and Nasopharynx Microbiota Reveals Continuity As Well As Niche-Specificity

Commentary: Proteomics Analysis Revealed that Crosstalk between Helicobacter pylori and Streptococcus mitis May Enhance Bacterial Survival and Reduces Carcinogenesis

Parallelized, Aerobic, Single Carbon-Source Enrichments from Different Natural Environments Contain Divergent Microbial Communities

From Genes to Ecosystems in Microbiology: Modeling Approaches and the Importance of Individuality

Wuji Wan Formula Ameliorates Diarrhea and Disordered Colonic Motility in Post-inflammation Irritable Bowel Syndrome Rats by Modulating the Gut Microbiota

Taxonomic and Functional Differences between Microbial Communities in Qinghai Lake and Its Input Streams

Flos Lonicera Combined with Metformin Ameliorates Hepatosteatosis and Glucose Intolerance in Association with Gut Microbiota Modulation

Microbiome Datasets Are Compositional: And This Is Not Optional

Metagenomic Analysis of the Gut Microbiome of the Common Black Slug Arion ater in Search of Novel Lignocellulose Degrading Enzymes

Low-Molecular-Weight Chitosan Supplementation Increases the Population of Prevotella in the Cecal Contents of Weanling Pigs

Analysis of Microbiome Data in the Presence of Excess Zeros

Isolation and Characterization of Pseudomonas spp. Strains That Efficiently Decompose Sodium Dodecyl Sulfate

Bacillus subtilis Biofilm Development – A Computerized Study of Morphology and Kinetics

Camelina Seed Supplementation at Two Dietary Fat Levels Change Ruminal Bacterial Community Composition in a Dual-Flow Continuous Culture System