Frontiers in Microbiology | Terrestrial Microbiology

Original Research

Published on 07 Apr 2025

Single-cell genomics of single soil aggregates: methodological assessment and potential implications with a focus on nitrogen metabolism

in Terrestrial Microbiology

Emi Matsumura
Hiromi Kato
Shintaro Hara
Tsubasa Ohbayashi
Koji Ito
Ryo Shingubara
Tomoya Kawakami
Satoshi Mitsunobu
Tatsuya Saeki
Soichiro Tsuda

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1557188

4,587 views
3 citations

Original Research

Published on 02 Apr 2025

Microbial community dynamics and bioremediation strategies for petroleum contamination in an in-service oil Depot, middle-lower Yellow River Basin

in Terrestrial Microbiology

Quanwei Song
Bingyu Zhou
Yinan Song
Xianyuan Du
Hongkun Chen
Rui Zuo
Jin Zheng
Tingyu Yang
Yimin Sang
Jufeng Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1544233

4,330 views
5 citations

Original Research

Published on 02 Apr 2025

Combined effects of acidification and warming on soil denitrification and microbial community

in Terrestrial Microbiology

Peiyuan Xu
Mengke Gao
Yuchen Li
Jun Ye
Jianqiang Su
Hu Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1572497

2,659 views
2 citations

Original Research

Published on 27 Mar 2025

Differences in rhizospheric microbial communities between cultivated and wild endangered Glyptostrobus pensilis

in Terrestrial Microbiology

Xiaojuan Yang
Biyu Deng
Shiyi Lu
Cong Wang
Yongyan Liang
Shinan Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1548836

1,989 views

Original Research

Published on 21 Mar 2025

Response of foxtail millet yield, soil chemical property and bacterial community to different green manure-foxtail millet rotation models in North China

in Terrestrial Microbiology

Guohong Yu
Ya Han
Pengcheng Liu
Hongbo Hao
Mingzhe Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1558354

1,791 views
2 citations

Original Research

Published on 20 Mar 2025

PGPR and nutrient consortia promoted cotton growth, antioxidant enzymes, and mineral uptake by suppressing sooty mold in arid climate

in Terrestrial Microbiology

Muhammad Luqman
Maqshoof Ahmad
Abubakar Dar
Azhar Hussain
Usman Zulfiqar
Muhammad Zahid Mumtaz
Adnan Mustafa
Abd El-Zaher M. A. Mustafa
Mohamed S. Elshikh

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1551465

3,397 views
4 citations

Original Research

Published on 18 Mar 2025

Soil fungal community and co-occurrence network patterns at different successional stages of black locust coppice stands

in Terrestrial Microbiology

Huimei Tian
Liangzhe Li
Yunpeng Zhu
Chengcheng Wang
Mengxue Wu
Weixing Shen
Chuanrong Li
Kun Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1528028

2,548 views
5 citations

Editorial

Published on 18 Mar 2025

Editorial: Insights in terrestrial microbiology: 2023/2024

in Terrestrial Microbiology

Paola Grenni
Ruibo Sun
Jeanette M. Norton

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1583425

1,818 views

Original Research

Published on 17 Mar 2025

Divergent profiles of rhizosphere soil carbon and nitrogen cycling in Pinus massoniana provenances with different types of carbon storage

in Terrestrial Microbiology

Zichen Huang
Jiannan Wang
Xin He
Mengyang Zhang
Xingyue Ren
Wenya Yu
Sheng Yao
Kongshu Ji

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1537173

2,417 views
1 citation

Original Research

Published on 17 Mar 2025

Effects of biochar combined with nitrification inhibitors on NH3 and N2O emission under different water conditions from vegetable soils

in Terrestrial Microbiology

Zhenyuan He
Haohao LÜ
Yuying Wang
Hangjie Yuan
Yuxue Liu
Neng Li
Lili He

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1547979

2,790 views
3 citations

Original Research

Published on 14 Mar 2025

Effects of long-term continuous cropping on microbial community structure and function in tobacco rhizosphere soil

in Terrestrial Microbiology

Bingye Yang
Changchun Feng
Hong Jiang
Yulan Chen
Mengjiao Ding
Huaxin Dai
Zhen Zhai
Mengmeng Yang
Taibo Liang
Yanling Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1496385

3,072 views
6 citations

Original Research

Published on 07 Mar 2025

Differentiation and response mechanisms of the endophytic flora of plants ecologically restored in the ilmenite area

in Terrestrial Microbiology

Xin Yu
Junqiang Xu
Ziping Zou
Yunfeng Zhang
Peng Wu
Qiang Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1555309

2,298 views
1 citation

Original Research

Published on 07 Mar 2025

Tripartite microbial augmentation of Bradyrhizobium diazoefficiens, Bacillus sp. MN54, and Piriformospora indica on growth, yield, and nutrient profiling of soybean (Glycine max L.)

in Terrestrial Microbiology

Munazza Rafique
Muhammad Naveed
Muhammad Zahid Mumtaz
Abid Niaz
Saud Alamri
Sajid ur Rehman
Manzer H. Siddiqui
Adnan Mustafa

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1437489

3,243 views
6 citations

Original Research

Published on 06 Mar 2025

Spartina alterniflora modifies the native arbuscular mycorrhizal fungal community in coastal ecosystem

in Terrestrial Microbiology

Yuxin Jiang
Meng Li
Xiaohong Guo

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1544111

2,252 views

Original Research

Published on 05 Mar 2025

Native mixed microbe inoculants (M1H) optimize soil health to promote Cajanus cajan growth: the soil fungi are more sensitive than bacteria

in Terrestrial Microbiology

Zexun Liu
Chengcheng Luo
Kang Zheng
Yongtao Sun
Jie Ru
Yaner Ma
Xinru Zhang
Yong Zhou
Jiayao Zhuang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1521064

2,432 views
5 citations

Original Research

Published on 28 Feb 2025

Differentiation of soil metabolic function and microbial communities between plantations and natural reforestation

in Terrestrial Microbiology

Nannan Zhang
Xiaoxia Chen
Tingju Ren
Jiangcheng Luo
Jin Liang
En Tao Wang
Fusun Shi

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1544641

2,761 views
2 citations

Original Research

Published on 27 Feb 2025

The long-term straw return resulted in significant differences in soil microbial community composition and community assembly processes between wheat and rice

in Terrestrial Microbiology

Siyuan Cui
Shangqi Xu
Guangqiao Cao
Xinkai Zhu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1533839

2,932 views
6 citations

Original Research

Published on 26 Feb 2025

Understanding the microbiome–crop rotation nexus in karst agricultural systems: insights from Southwestern China

in Terrestrial Microbiology

Bin Wang
Nianjie Shang
Xinwei Feng
Zongling Hu
Pengfei Li
Yi Chen
Binbin Hu
Mengjiao Ding
Junju Xu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1503636

2,447 views
2 citations

Original Research

Published on 25 Feb 2025

Diversity of arbuscular mycorrhizal fungi and its response to seasonal variation in alpine grassland of the eastern Tibetan Plateau

in Terrestrial Microbiology

Wanqing Dong
Tingting Ding
Tingyu Duan

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1511979

1,732 views
1 citation

Original Research

Published on 21 Feb 2025

Bioindicator “fingerprints” of methane-emitting thermokarst features in Alaskan soils

in Terrestrial Microbiology

Chuck R. Smallwood
Nicholas Hasson
Jihoon Yang
Jenna Schambach
Haley Bennett
Bryce Ricken
Jason Sammon
Monica Mascarenas
Naomi Eberling
Stephanie Kolker

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1462941

3,496 views
2 citations

Original Research

Published on 19 Feb 2025

The distribution of aerobic bacteria in Chinese cropland is linked to the soil texture

in Terrestrial Microbiology

Xiao Jiamin
Wu Haonan
Xu Chao
Hu Yajun
Xu Zhiwen
Zhang Dongxu
Li Abo
Wei Xiaomeng
Ge Tida
Wei Gehong

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1541460

2,379 views
3 citations

Original Research

Published on 18 Feb 2025

Metagenomic analysis revealed the bioremediation mechanism of lead and cadmium contamination by modified biochar synergized with Bacillus cereus PSB-2 in phosphate mining wasteland

in Terrestrial Microbiology

Yuxin Zhang
Jun Peng
Ziwei Wang
Fang Zhou
Junxia Yu
Ruan Chi
Chunqiao Xiao

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1529784

5,661 views
11 citations

Original Research

Published on 17 Feb 2025

Rhizosphere microbiome metagenomics in PGPR-mediated alleviation of combined stress from polypropylene microplastics and Cd in hybrid Pennisetum

in Terrestrial Microbiology

Si-Yu Zhao
Yue-Liang Meng
Zi-Han Yang
B. Larry Li
Yu-Ying Li
Hui Han
Ling Liu
Peng-Fei Duan
Zhao-Jin Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1549043

4,869 views
8 citations

Original Research

Published on 13 Feb 2025

Comparison of microbial diversity and community structure in soils managed with organic and chemical fertilization strategies using amplicon sequencing of 16 s and ITS regions

in Terrestrial Microbiology

Ajay Kumar Mishra
Poonam Yadav
Sheetal Sharma
Piyush Maurya

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1444903

7,249 views
9 citations

1,720 articles

articles

Single-cell genomics of single soil aggregates: methodological assessment and potential implications with a focus on nitrogen metabolism

Microbial community dynamics and bioremediation strategies for petroleum contamination in an in-service oil Depot, middle-lower Yellow River Basin

Combined effects of acidification and warming on soil denitrification and microbial community

Differences in rhizospheric microbial communities between cultivated and wild endangered Glyptostrobus pensilis

Response of foxtail millet yield, soil chemical property and bacterial community to different green manure-foxtail millet rotation models in North China

PGPR and nutrient consortia promoted cotton growth, antioxidant enzymes, and mineral uptake by suppressing sooty mold in arid climate

Soil fungal community and co-occurrence network patterns at different successional stages of black locust coppice stands

Editorial: Insights in terrestrial microbiology: 2023/2024

Divergent profiles of rhizosphere soil carbon and nitrogen cycling in Pinus massoniana provenances with different types of carbon storage

Effects of biochar combined with nitrification inhibitors on NH3 and N2O emission under different water conditions from vegetable soils

Effects of long-term continuous cropping on microbial community structure and function in tobacco rhizosphere soil

Differentiation and response mechanisms of the endophytic flora of plants ecologically restored in the ilmenite area

Tripartite microbial augmentation of Bradyrhizobium diazoefficiens, Bacillus sp. MN54, and Piriformospora indica on growth, yield, and nutrient profiling of soybean (Glycine max L.)

Spartina alterniflora modifies the native arbuscular mycorrhizal fungal community in coastal ecosystem

Native mixed microbe inoculants (M1H) optimize soil health to promote Cajanus cajan growth: the soil fungi are more sensitive than bacteria

Differentiation of soil metabolic function and microbial communities between plantations and natural reforestation

The long-term straw return resulted in significant differences in soil microbial community composition and community assembly processes between wheat and rice

Understanding the microbiome–crop rotation nexus in karst agricultural systems: insights from Southwestern China

Diversity of arbuscular mycorrhizal fungi and its response to seasonal variation in alpine grassland of the eastern Tibetan Plateau

Bioindicator “fingerprints” of methane-emitting thermokarst features in Alaskan soils

The distribution of aerobic bacteria in Chinese cropland is linked to the soil texture

Metagenomic analysis revealed the bioremediation mechanism of lead and cadmium contamination by modified biochar synergized with Bacillus cereus PSB-2 in phosphate mining wasteland

Rhizosphere microbiome metagenomics in PGPR-mediated alleviation of combined stress from polypropylene microplastics and Cd in hybrid Pennisetum

Comparison of microbial diversity and community structure in soils managed with organic and chemical fertilization strategies using amplicon sequencing of 16 s and ITS regions