Frontiers in Microbiology | Terrestrial Microbiology

Review

Published on 19 Sep 2025

Harnessing beneficial bacteria to remediate antibiotic-polluted agricultural soils: integrating source diversity, bioavailability modulators, and ecological impacts

in Terrestrial Microbiology

Oluwaseyi Samuel Olanrewaju
Cornelius Carlos Bezuidenhout

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1635233

4,094 views

Review

Published on 19 Sep 2025

Harnessing beneficial soil bacteria to promote sustainable agriculture and food security: a one health perspective

in Terrestrial Microbiology

Carlos Sabater
Madalina Neacsu
Sylvia H. Duncan

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1638553

5,229 views
2 citations

Original Research

Published on 18 Sep 2025

EM biofertilizer and organic fertilizer co-application modulate vegetation-soil-bacteria interaction networks in artificial grasslands of alpine mining regions

in Terrestrial Microbiology

Liangyu Lyu
Jianjun Shi
Pei Gao
Zongcheng Cai
Fayi Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1659475

2,612 views
3 citations

Original Research

Published on 17 Sep 2025

Insights into microbiome-triterpenoid correlation in Poria cocos via comparative analysis of sclerotial and soil microenvironments

in Terrestrial Microbiology

Mingzhu Zheng
Can Zhong
Gen Pan
Jing Xie
Shuihan Zhang
Jian Jin

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1674216

1,939 views

Editorial

Published on 16 Sep 2025

Editorial: Soil microbial communities to promote suppressiveness against soil-borne pathogens and diseases

in Terrestrial Microbiology

Jose Ignacio Marín-Guirao
Dongdong Yan
Francesco Di Gioia
Massimo Pugliese
Jesus D. Fernandez-Bayo

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1677158

2,489 views
1 citation

Original Research

Published on 05 Sep 2025

Soil disinfestation and optimized nutrient management reduces nitrogen leaching and shapes soil microbial community composition in greenhouse cucumber production systems

in Terrestrial Microbiology

Xilin Guan
Bin Liu
Wenfan Bian
Yufeng Zhang
Xinhao Gao
Xinping Chen
Yan Li
Shenzhong Tian

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1663041

3,529 views

Original Research

Published on 04 Sep 2025

The impact of long-term mulching cultivation on soil quality, microbial community structure, and fruit quality in “Wanzhou Red Mandarin” citrus orchard

in Terrestrial Microbiology

Yiding Liu
Yanqi Teng
Jie Zheng
Aziz Khan
Xiang Li
Junlin Cui
Krishan K. Verma
Qigao Guo
Kai Zhu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1616151

2,827 views
2 citations

Original Research

Published on 04 Sep 2025

Microbial network properties and functional gene diversity drive soil multifunctionality during biocrust succession

in Terrestrial Microbiology

Yawen Jiang
Xuexia Zhang
Mingjie Li
Jing Yang
Yuqing Zhang
Shugao Qin
Wei Feng

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1656706

3,063 views
1 citation

Opinion

Published on 03 Sep 2025

Earthworm breeding techniques and their roles in microbial regulation and soil carbon sequestration

in Terrestrial Microbiology

Jiahui Wu
Yu Yu
Xueqing Deng
Fuwei Wang
Xianfu Yuan
Hongbao Wu
Jianfei Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1651602

2,850 views
2 citations

Original Research

Published on 03 Sep 2025

Effects of different crop rotation patterns on the growth of Guizhou sorghum and rhizosphere soil quality: implications for agricultural policy

in Terrestrial Microbiology

Manjing Chen
Jiaqi Shen
Ying Zhao
Peiyun Xie
Yingying Zhou
Yuwen Jiang
Xiaofeng Deng
Yan Ren
Mingbo Shao

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1637727

1,761 views
1 citation

Original Research

Published on 02 Sep 2025

Tobacco intercropping enhances soil fertility by improving synergic interactions between soil physicochemical and microbial properties

in Terrestrial Microbiology

Kaiyuan Gu
Xianglu Liu
Ming Liu
Xu Wei
Juan Li
Yanxia Hu
Yonglei Jiang
Yi Chen
Dexun Wang
Yanming Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1647493

2,771 views
3 citations

Original Research

Published on 02 Sep 2025

Rapid reshaping of the soil microbiome and metabolome during short-term flooding and draining in rice

in Terrestrial Microbiology

Yanyao Lu
Donghong Lai
Shuo Cai
Haiyuan Wang
Zejun Hu
Qiangqiang Xiong

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1632744

2,367 views

Original Research

Published on 01 Sep 2025

Synergistic effects of beneficial microbial inoculants and SMS-amendments on improving soil properties and Pinus seedling growth in degraded soils

in Terrestrial Microbiology

Xuan Bo
Yong Liu
Hong Zhang
Chao Su
Yang Miao

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1608689

2,660 views

Original Research

Published on 29 Aug 2025

Reshaping of soil properties and microbial community by the conversion from non-grain cultivated land to paddy field

in Terrestrial Microbiology

Xuqing Li
Han Chen
Xiao Wang
Qurban Ali
Luqiong Lv
Tiefeng Zhou
Munazza Ijaz
Temoor Ahmed
Jianli Yan
Bin Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1643144

1,699 views

Original Research

Published on 29 Aug 2025

Response of soil microbial community diversity and structure to soybean-based intercropping and its effects on yield

in Terrestrial Microbiology

Xinyi Zhan
Yongwei Shu
Liu Guo
Xinyue Liu
Quan Zhao
Yuze Li
Taiwen Yong
Wenyu Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1658783

2,842 views
1 citation

Original Research

Published on 29 Aug 2025

Features and rhizosphere colonization strategies of Lactobacillus plantarum 0308 in soil-tomato systems

in Terrestrial Microbiology

Xiancui Zhang
Haoran Liao
Tong Cai
Peiwen Cai
Xiangyu Wu
Zhe Wang
Haoyu Ma
Guoqiang Qiu
Mingxing Zhao
Xingmeng Lu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1652881

2,210 views

Original Research

Published on 26 Aug 2025

Land use change has profoundly altered the process of bacterial community assembly in the northeastern black soil zone

in Terrestrial Microbiology

Ning Sun
Xu Zhao
Fangyuan Liu
Ge Song
Mengmeng Zhang
Fuqiang Song

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1640134

2,175 views
1 citation

Original Research

Published on 25 Aug 2025

Reusing waste biomass in crop protection—Calcinated oyster shell powder enhances rhizospheric microbial-mediated suppression of root-knot nematodes

in Terrestrial Microbiology

Qipeng Jiang
Jiamin Yu
Yong Wang
Jinfeng Wang
Lianqiang Jiang
Shiping Guo
Yu Qian
Xiangwen Yu
Dongyang Liu
Daojiang Xi

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1625653

2,023 views

Original Research

Published on 25 Aug 2025

Structure and function of the topsoil microbiome in Chinese terrestrial ecosystems

in Terrestrial Microbiology

Yuqiang Li
Yulong Duan
Junbiao Zhang
Evangelos Petropoulos
Jianhua Zhao
Fasi Wu
Lilong Wang
Yun Chen
Xuyang Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1595810

2,511 views

Original Research

Published on 22 Aug 2025

Soil microbial community responses to active and passive restoration of selectively logged Bornean tropical forest

in Terrestrial Microbiology

Samuel J. B. Robinson
Dafydd M. O. Elias
Tim Goodall
Niall P. McNamara
Robert Griffiths
Noreen Majalap
Yap Sau Wai
Nicholas J. Ostle

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1570294

3,158 views

Original Research

Published on 19 Aug 2025

Impact of cultivation duration and methods on soil physicochemical properties, ginseng growth, and arbuscular mycorrhizal fungi community structure

in Terrestrial Microbiology

Jinlong Wang
Zhihui Kan
Xiaole Zhang
Boya Yang
Yuxuan Dong
Bo Wang
Chunjuan Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1628889

2,038 views
2 citations

Original Research

Published on 14 Aug 2025

Carbon substrates utilization determine antagonistic fungal-fungal interactions among root-associated fungi

in Terrestrial Microbiology

Rosa Kemmerling
Louise-Elisabeth Dintilhac
Anouk Zancarini
Alice Mataigne
Christophe Mougel
Nathan Vannier

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1645107

3,436 views
1 citation

Original Research

Published on 07 Aug 2025

Soil microbial communities are more disrupted by extreme drought than by gradual climate shifts under different land-use intensities

in Terrestrial Microbiology

Lena Philipp
Evgenia Blagodatskaya
Mika Tarkka
Thomas Reitz

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1649443

3,845 views
4 citations

Original Research

Published on 07 Aug 2025

Loquat-tea intercropping enhances rhizosphere microbial diversity and functional profiles in tea soil ecosystems

in Terrestrial Microbiology

Chengyi Zou
Tianfei Dai
Zhonghua Liang
Mingyan Li
Lina Meng
Xianming Zhao
Nianzhen Li
Qin Wei
Mohamed A. Abd Elhamid
Amr M. Atif

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1651997

1,889 views
1 citation

1,720 articles

articles

Harnessing beneficial bacteria to remediate antibiotic-polluted agricultural soils: integrating source diversity, bioavailability modulators, and ecological impacts

Harnessing beneficial soil bacteria to promote sustainable agriculture and food security: a one health perspective

EM biofertilizer and organic fertilizer co-application modulate vegetation-soil-bacteria interaction networks in artificial grasslands of alpine mining regions

Insights into microbiome-triterpenoid correlation in Poria cocos via comparative analysis of sclerotial and soil microenvironments

Editorial: Soil microbial communities to promote suppressiveness against soil-borne pathogens and diseases

Soil disinfestation and optimized nutrient management reduces nitrogen leaching and shapes soil microbial community composition in greenhouse cucumber production systems

The impact of long-term mulching cultivation on soil quality, microbial community structure, and fruit quality in “Wanzhou Red Mandarin” citrus orchard

Microbial network properties and functional gene diversity drive soil multifunctionality during biocrust succession

Earthworm breeding techniques and their roles in microbial regulation and soil carbon sequestration

Effects of different crop rotation patterns on the growth of Guizhou sorghum and rhizosphere soil quality: implications for agricultural policy

Tobacco intercropping enhances soil fertility by improving synergic interactions between soil physicochemical and microbial properties

Rapid reshaping of the soil microbiome and metabolome during short-term flooding and draining in rice

Synergistic effects of beneficial microbial inoculants and SMS-amendments on improving soil properties and Pinus seedling growth in degraded soils

Reshaping of soil properties and microbial community by the conversion from non-grain cultivated land to paddy field

Response of soil microbial community diversity and structure to soybean-based intercropping and its effects on yield

Features and rhizosphere colonization strategies of Lactobacillus plantarum 0308 in soil-tomato systems

Land use change has profoundly altered the process of bacterial community assembly in the northeastern black soil zone

Reusing waste biomass in crop protection—Calcinated oyster shell powder enhances rhizospheric microbial-mediated suppression of root-knot nematodes

Structure and function of the topsoil microbiome in Chinese terrestrial ecosystems

Soil microbial community responses to active and passive restoration of selectively logged Bornean tropical forest

Impact of cultivation duration and methods on soil physicochemical properties, ginseng growth, and arbuscular mycorrhizal fungi community structure

Carbon substrates utilization determine antagonistic fungal-fungal interactions among root-associated fungi

Soil microbial communities are more disrupted by extreme drought than by gradual climate shifts under different land-use intensities

Loquat-tea intercropping enhances rhizosphere microbial diversity and functional profiles in tea soil ecosystems