Frontiers in Molecular Biosciences

Original Research

Published on 17 Aug 2023

Inhibitory to non-inhibitory evolution of the ζ subunit of the F1FO-ATPase of Paracoccus denitrificans and α-proteobacteria as related to mitochondrial endosymbiosis

in Structural Biology

Francisco Mendoza-Hoffmann
Lingyun Yang
Damiano Buratto
Jorge Brito-Sánchez
Gilberto Garduño-Javier
Emiliano Salinas-López
Cristina Uribe-Álvarez
Raquel Ortega
Oliver Sotelo-Serrano
Miguel Ángel Cevallos

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1184200

5,056 views

Original Research

Published on 14 Aug 2023

Identifying structural and dynamic changes during the Biliverdin Reductase B catalytic cycle

in Structural Biology

Eunjeong Lee
Matthew J. McLeod
Jasmina S. Redzic
Barbara Marcolin
Robert E. Thorne
Pratul Agarwal
Elan Zohar Eisenmesser

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1244587

3,753 views
4 citations

Original Research

Published on 02 Aug 2023

Angle-dependent rotation velocity consistent with ADP release in bacterial F1-ATPase

in Structural Biology

Nathan Suiter
Sándor Volkán-Kacsó

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1184249

2,055 views
3 citations

Original Research

Published on 31 Jul 2023

Engagement of intrinsic disordered proteins in protein–protein interaction

in Structural Biology

Irena Roterman
Katarzyna Stapor
Leszek Konieczny

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1230922

3,147 views
8 citations

Original Research

Published on 17 Jul 2023

Probing the conformational changes of in vivo overexpressed cell cycle regulator 6S ncRNA

in Structural Biology

Eleni Makraki
Sophia Miliara
Michalis Pagkalos
Michael Kokkinidis
Efstratios Mylonas
Vasiliki E. Fadouloglou

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1219668

3,494 views

Original Research

Published on 06 Jul 2023

Automated identification of chalcogen bonds in AlphaFold protein structure database files: is it possible?

in Structural Biology

Oliviero Carugo
Kristina Djinović-Carugo

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1155629

4,745 views
7 citations

Original Research

Published on 05 Jul 2023

Understanding structure-guided variant effect predictions using 3D convolutional neural networks

in Structural Biology

Gayatri Ramakrishnan
Coos Baakman
Stephan Heijl
Bas Vroling
Ragna van Horck
Jeffrey Hiraki
Li C. Xue
Martijn A. Huynen

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1204157

5,550 views
13 citations

Review

Published on 29 Jun 2023

Dynamic allostery in thrombin—a review

in Structural Biology

Elizabeth A. Komives

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1200465

4,757 views
8 citations

Opinion

Published on 22 Jun 2023

AI-based protein models enhance the accuracy of experimentally determined protein crystal structures

in Structural Biology

Ki Hyun Nam

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1208810

4,195 views
6 citations

Review

Published on 16 Jun 2023

The cytosolic N-terminal domain of V-ATPase a-subunits is a regulatory hub targeted by multiple signals

in Structural Biology

Farzana Tuli
Patricia M. Kane

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1168680

7,192 views
8 citations

Original Research

Published on 09 Jun 2023

Physical pictures of rotation mechanisms of F1- and V1-ATPases: Leading roles of translational, configurational entropy of water

in Structural Biology

Satoshi Yasuda
Tomohiko Hayashi
Takeshi Murata
Masahiro Kinoshita

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1159603

4,335 views
4 citations

Mini Review

Published on 09 May 2023

Reversible binding of divalent cations to Ductin protein assemblies—A putative new regulatory mechanism of membrane traffic processes

in Structural Biology

Krisztina Sebők-Nagy
András Blastyák
Gábor Juhász
Tibor Páli

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1195010

2,817 views
3 citations

Editorial

Published on 02 May 2023

Editorial: “Small molecules targeting transmembrane receptors and ion channels in drug discovery”

in Structural Biology

Rosa Maria Vitale
Fabio Arturo Iannotti
Tullio Florio

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1183713

2,571 views
1 citation

Original Research

Published on 02 May 2023

Interactions of the protein tyrosine phosphatase PTPN3 with viral and cellular partners through its PDZ domain: insights into structural determinants and phosphatase activity

in Structural Biology

Mariano Genera
Baptiste Colcombet-Cazenave
Anastasia Croitoru
Bertrand Raynal
Ariel Mechaly
Joël Caillet
Ahmed Haouz
Nicolas Wolff
Célia Caillet-Saguy

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1192621

4,487 views
4 citations

Original Research

Published on 02 May 2023

Arginine anchor points govern H3 tail dynamics

in Structural Biology

Christine E. Jennings
Casey J. Zoss
Emma A. Morrison

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1150400

4,913 views
13 citations

Review

Published on 24 Apr 2023

Rotary mechanism of V/A-ATPases—how is ATP hydrolysis converted into a mechanical step rotation in rotary ATPases?

in Structural Biology

Ken Yokoyama

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1176114

6,787 views
5 citations

Editorial

Published on 18 Apr 2023

Editorial: In celebration of women in science: Structural biology

in Structural Biology

Roberta Spadaccini

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1174561

2,022 views

Review

Published on 14 Apr 2023

Sweetening K-channels: what sugar taught us about permeation and gating

in Structural Biology

David Naranjo
Ignacio Diaz-Franulic

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1063796

3,270 views
3 citations

Original Research

Published on 07 Apr 2023

V-ATPase modulates exocytosis in neuroendocrine cells through the activation of the ARNO-Arf6-PLD pathway and the synthesis of phosphatidic acid

in Structural Biology

Qili Wang
Alexander Wolf
Sebahat Ozkan
Ludovic Richert
Yves Mely
Sylvette Chasserot-Golaz
Stéphane Ory
Stéphane Gasman
Nicolas Vitale

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1163545

3,790 views
9 citations

Original Research

Published on 30 Mar 2023

The EJC disassembly factor PYM is an intrinsically disordered protein and forms a fuzzy complex with RNA

in Structural Biology

Deepshikha Verma
Veena Hegde
John Kirkpatrick
Teresa Carlomagno

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1148653

3,706 views
3 citations

Original Research

Published on 29 Mar 2023

DNA accelerates the protease inhibition of a bacterial serpin chloropin

in Structural Biology

Jiawei Xu
Wei Ye
Ting Ting Yang
Teng Yan
Haiyan Cai
Aiwu Zhou
Yufeng Yang

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1157186

3,816 views
1 citation

Original Research

Published on 29 Mar 2023

Structural polymorphism of the low-complexity C-terminal domain of TDP-43 amyloid aggregates revealed by solid-state NMR

in Structural Biology

Jayakrishna Shenoy
Alons Lends
Mélanie Berbon
Muhammed Bilal
Nadia El Mammeri
Mathilde Bertoni
Ahmad Saad
Estelle Morvan
Axelle Grélard
Sophie Lecomte

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1148302

6,090 views
18 citations

Original Research

Published on 28 Mar 2023

Riboflavin kinase and pyridoxine 5′-phosphate oxidase complex formation envisages transient interactions for FMN cofactor delivery

in Structural Biology

Maribel Rivero
Sergio Boneta
Nerea Novo
Adrián Velázquez-Campoy
Victor Polo
Milagros Medina

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1167348

5,831 views
8 citations

Original Research

Published on 16 Mar 2023

Structural and oxidative investigation of a recombinant high-yielding fetal hemoglobin mutant

in Structural Biology

Karin Kettisen
Maria Nyblom
Emanuel Smeds
Angela Fago
Leif Bülow

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2023.1133985

7,941 views
3 citations

501 articles

articles

Inhibitory to non-inhibitory evolution of the ζ subunit of the F1FO-ATPase of Paracoccus denitrificans and α-proteobacteria as related to mitochondrial endosymbiosis

Identifying structural and dynamic changes during the Biliverdin Reductase B catalytic cycle

Angle-dependent rotation velocity consistent with ADP release in bacterial F1-ATPase

Engagement of intrinsic disordered proteins in protein–protein interaction

Probing the conformational changes of in vivo overexpressed cell cycle regulator 6S ncRNA

Automated identification of chalcogen bonds in AlphaFold protein structure database files: is it possible?

Understanding structure-guided variant effect predictions using 3D convolutional neural networks

Dynamic allostery in thrombin—a review

AI-based protein models enhance the accuracy of experimentally determined protein crystal structures

The cytosolic N-terminal domain of V-ATPase a-subunits is a regulatory hub targeted by multiple signals

Physical pictures of rotation mechanisms of F1- and V1-ATPases: Leading roles of translational, configurational entropy of water

Reversible binding of divalent cations to Ductin protein assemblies—A putative new regulatory mechanism of membrane traffic processes

Editorial: “Small molecules targeting transmembrane receptors and ion channels in drug discovery”

Interactions of the protein tyrosine phosphatase PTPN3 with viral and cellular partners through its PDZ domain: insights into structural determinants and phosphatase activity

Arginine anchor points govern H3 tail dynamics

Rotary mechanism of V/A-ATPases—how is ATP hydrolysis converted into a mechanical step rotation in rotary ATPases?

Editorial: In celebration of women in science: Structural biology

Sweetening K-channels: what sugar taught us about permeation and gating

V-ATPase modulates exocytosis in neuroendocrine cells through the activation of the ARNO-Arf6-PLD pathway and the synthesis of phosphatidic acid

The EJC disassembly factor PYM is an intrinsically disordered protein and forms a fuzzy complex with RNA

DNA accelerates the protease inhibition of a bacterial serpin chloropin

Structural polymorphism of the low-complexity C-terminal domain of TDP-43 amyloid aggregates revealed by solid-state NMR

Riboflavin kinase and pyridoxine 5′-phosphate oxidase complex formation envisages transient interactions for FMN cofactor delivery

Structural and oxidative investigation of a recombinant high-yielding fetal hemoglobin mutant