Frontiers in Molecular Biosciences

Original Research

Published on 15 Nov 2021

An Unbound Proline-Rich Signaling Peptide Frequently Samples Cis Conformations in Gaussian Accelerated Molecular Dynamics Simulations

Juan Alcantara
Robyn Stix
Katherine Huang
Acadia Connor
Ray East
Valeria Jaramillo-Martinez
Elliott J. Stollar
K. Aurelia Ball

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.734169

7,826 views
15 citations

Mini Review

Published on 15 Nov 2021

Roles of Integrins in Gastrointestinal Cancer Metastasis

Sicong Hou
Jiaxin Wang
Wenqian Li
Xin Hao
Qinglei Hang

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.708779

8,206 views
25 citations

Original Research

Published on 15 Nov 2021

Processing of RNA Containing 8-Oxo-7,8-Dihydroguanosine (8-oxoG) by the Exoribonuclease Xrn-1

Cheyenne N. Phillips
Shawn Schowe
Conner J. Langeberg
Namoos Siddique
Erich G. Chapman
Marino J. E. Resendiz

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.780315

5,396 views
10 citations

Technology and Code

Published on 15 Nov 2021

WebMaBoSS: A Web Interface for Simulating Boolean Models Stochastically

Vincent Noël
Marco Ruscone
Gautier Stoll
Eric Viara
Andrei Zinovyev
Emmanuel Barillot
Laurence Calzone

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.754444

5,296 views
4 citations

Original Research

Published on 15 Nov 2021

Modeling DNA Opening in the Eukaryotic Transcription Initiation Complexes via Coarse-Grained Models

Genki Shino
Shoji Takada

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.772486

5,333 views
13 citations

Original Research

Published on 15 Nov 2021

Identification of Clinical and Tumor Microenvironment Characteristics of Hypoxia-Related Risk Signature in Lung Adenocarcinoma

Zili Dai
Taisheng Liu
Guihong Liu
Zhen Deng
Peng Yu
Baiyao Wang
Bohong Cen
Liyi Guo
Jian Zhang

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.757421

5,787 views
10 citations

Review

Published on 15 Nov 2021

Molecular Recognition Insights of Sialic Acid Glycans by Distinct Receptors Unveiled by NMR and Molecular Modeling

Cátia Oliveira Soares
Ana Sofia Grosso
June Ereño-Orbea
Helena Coelho
Filipa Marcelo

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.727847

11,679 views
25 citations

Original Research

Published on 12 Nov 2021

An lncRNA Model for Predicting the Prognosis of Hepatocellular Carcinoma Patients and ceRNA Mechanism

Hao Zhang
Renzheng Liu
Lin Sun
Xiao Hu

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.749313

3,148 views
4 citations

Original Research

Published on 12 Nov 2021

Explore Protein Conformational Space With Variational Autoencoder

Hao Tian
Xi Jiang
Francesco Trozzi
Sian Xiao
Eric C. Larson
Peng Tao

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.781635

13,953 views
47 citations

Editorial

Published on 12 Nov 2021

Editorial: Advanced Sampling and Modeling in Molecular Simulations for Slow and Large-Scale Biomolecular Dynamics

Xiakun Chu
Yong Wang
Pengfei Tian
Wenfei Li
Davide Mercadante

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.795991

3,636 views
3 citations

Review

Published on 12 Nov 2021

Molecular Strategies to Target Protein Aggregation in Huntington’s Disease

Olga D. Jarosińska
Stefan G. D. Rüdiger

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.769184

25,923 views
78 citations

Review

Published on 12 Nov 2021

Reproduction in Animal Models of Lysosomal Storage Diseases: A Scoping Review

Daniela Vuolo
Cinthia Castro Do Nascimento
Vânia D’Almeida

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.773384

4,133 views
8 citations

Original Research

Published on 12 Nov 2021

Therapeutic Targeting of Nonalcoholic Fatty Liver Disease by Downregulating SREBP-1C Expression via AMPK-KLF10 Axis

Yu-Chi Chen
Rong-Jane Chen
Szu-Yuan Peng
Winston C. Y. Yu
Vincent Hung-Shu Chang

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.751938

6,812 views
19 citations

Review

Published on 11 Nov 2021

NMR Studies of Tau Protein in Tauopathies

Kristine Kitoka
Rostislav Skrabana
Norbert Gasparik
Jozef Hritz
Kristaps Jaudzems

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.761227

9,017 views
14 citations

Original Research

Published on 11 Nov 2021

Omics- and Pharmacogenomic Evidence for the Prognostic, Regulatory, and Immune-Related Roles of PBK in a Pan-Cancer Cohort

Yi Liu
Juan Xiang
Gang Peng
Chenfu Shen

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.785370

10,954 views
8 citations

Original Research

Published on 11 Nov 2021

MXD3 as an Immunological and Prognostic Factor From Pancancer Analysis

Xiaoyu Zhang
Xiaoqin He
Yue Li
Yangtao Xu
Wenliang Chen
Xin Liu
Xinyao Hu
Lin Xiong
Ximing Xu

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.702206

8,287 views
6 citations

Mini Review

Published on 11 Nov 2021

Multiplexed Single-Cell in situ RNA Profiling

Yu-Sheng Wang
Jia Guo

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.775410

7,518 views
13 citations

Original Research

Published on 11 Nov 2021

A Type I Collagen-Targeted MR Imaging Probe for Staging Fibrosis in Crohn’s Disease

Zhoulei Li
Baolan Lu
Jinjiang Lin
Shaofu He
Li Huang
Yangdi Wang
Jixin Meng
Ziping Li
Shi-Ting Feng
Shaochun Lin

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.762355

4,494 views
11 citations

Original Research

Published on 10 Nov 2021

Serum N-Glycome Diversity in Teleost and Chondrostrean Fishes

Kazuhiro Aoki
Tadahiro Kumagai
René Ranzinger
Carl Bergmann
Alvin Camus
Michael Tiemeyer

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.778383

5,815 views
3 citations

Original Research

Published on 10 Nov 2021

Optimal Detection of Fusion Pore Dynamics Using Polarized Total Internal Reflection Fluorescence Microscopy

Joerg Nikolaus
Kasey Hancock
Maria Tsemperouli
David Baddeley
Erdem Karatekin

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.740408

4,944 views
6 citations

Editorial

Published on 10 Nov 2021

Editorial: Small RNAs as a Diverse Toolkit for Bacteria

Olga Ozoline
Konstantin Shavkunov

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.791021

2,433 views
1 citation

Original Research

Published on 10 Nov 2021

The Flexibility of Oligosaccharides Unveiled Through Residual Dipolar Coupling Analysis

Ana Poveda
Giulio Fittolani
Peter H. Seeberger
Martina Delbianco
Jesús Jiménez-Barbero

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.784318

4,732 views
12 citations

Original Research

Published on 10 Nov 2021

An Integrative Pan-Cancer Analysis of PBK in Human Tumors

Huantao Wen
Zitao Chen
Min Li
Qiongzhen Huang
Yuhao Deng
Jiawei Zheng
Moliang Xiong
Pengfei Wang
Wangming Zhang

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.755911

8,271 views
12 citations

Original Research

Published on 09 Nov 2021

In Vitro Folliculogenesis in Mammalian Models: A Computational Biology Study

Nicola Bernabò
Chiara Di Berardino
Giulia Capacchietti
Alessia Peserico
Giorgia Buoncuore
Umberto Tosi
Martina Crociati
Maurizio Monaci
Barbara Barboni

Frontiers in Molecular Biosciences

doi 10.3389/fmolb.2021.737912

5,534 views
8 citations

1,401 Publications

volumes

An Unbound Proline-Rich Signaling Peptide Frequently Samples Cis Conformations in Gaussian Accelerated Molecular Dynamics Simulations

Roles of Integrins in Gastrointestinal Cancer Metastasis

Processing of RNA Containing 8-Oxo-7,8-Dihydroguanosine (8-oxoG) by the Exoribonuclease Xrn-1

WebMaBoSS: A Web Interface for Simulating Boolean Models Stochastically

Modeling DNA Opening in the Eukaryotic Transcription Initiation Complexes via Coarse-Grained Models

Identification of Clinical and Tumor Microenvironment Characteristics of Hypoxia-Related Risk Signature in Lung Adenocarcinoma

Molecular Recognition Insights of Sialic Acid Glycans by Distinct Receptors Unveiled by NMR and Molecular Modeling

An lncRNA Model for Predicting the Prognosis of Hepatocellular Carcinoma Patients and ceRNA Mechanism

Explore Protein Conformational Space With Variational Autoencoder

Editorial: Advanced Sampling and Modeling in Molecular Simulations for Slow and Large-Scale Biomolecular Dynamics

Molecular Strategies to Target Protein Aggregation in Huntington’s Disease

Reproduction in Animal Models of Lysosomal Storage Diseases: A Scoping Review

Therapeutic Targeting of Nonalcoholic Fatty Liver Disease by Downregulating SREBP-1C Expression via AMPK-KLF10 Axis

NMR Studies of Tau Protein in Tauopathies

Omics- and Pharmacogenomic Evidence for the Prognostic, Regulatory, and Immune-Related Roles of PBK in a Pan-Cancer Cohort

MXD3 as an Immunological and Prognostic Factor From Pancancer Analysis

Multiplexed Single-Cell in situ RNA Profiling

A Type I Collagen-Targeted MR Imaging Probe for Staging Fibrosis in Crohn’s Disease

Serum N-Glycome Diversity in Teleost and Chondrostrean Fishes

Optimal Detection of Fusion Pore Dynamics Using Polarized Total Internal Reflection Fluorescence Microscopy

Editorial: Small RNAs as a Diverse Toolkit for Bacteria

The Flexibility of Oligosaccharides Unveiled Through Residual Dipolar Coupling Analysis

An Integrative Pan-Cancer Analysis of PBK in Human Tumors

In Vitro Folliculogenesis in Mammalian Models: A Computational Biology Study