Frontiers in Neuroinformatics

Technology Report

Published on 20 May 2014

Neurovascular Network Explorer 1.0: a database of 2-photon single-vessel diameter measurements with MATLAB® graphical user interface

Vishnu B. Sridhar
Peifang Tian
Anders M. Dale
Anna Devor
Payam A. Saisan

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00056

6,158 views
5 citations

General Commentary

Published on 16 May 2014

Corrigendum: Impact of functional MRI data preprocessing pipeline on default-mode network detectability in patients with disorders of consciousness

Adrian S. Andronache
Cristina Rosazza
Davide Sattin
Matilde Leonardi
Ludovico D'Incerti
Ludovico Minati

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00050

3,156 views

Methods

Published on 08 May 2014

Estimating Neural Response Functions from fMRI

Sukhbinder Kumar
William Douglas Penny

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00048

6,236 views
8 citations

Original Research

Published on 07 May 2014

Reproducibility of graph metrics of human brain structural networks

Jeffrey T. Duda
Philip A. Cook
James C. Gee

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00046

10,277 views
33 citations

Original Research

Published on 05 May 2014

Variational Bayesian causal connectivity analysis for fMRI

Martin Luessi
S. Derin Babacan
Rafael Molina
James R. Booth
Aggelos K. Katsaggelos

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00045

7,435 views
8 citations

Methods

Published on 05 May 2014

Interactive 3D visualization of structural changes in the brain of a person with corticobasal syndrome

Claudia Hänel
Peter Pieperhoff
Bernd Hentschel
Katrin Amunts
Torsten Kuhlen

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00042

9,180 views
15 citations

Technology Report

Published on 30 Apr 2014

Structure-centered portal for child psychiatry research

Pallavi Rane
Christian Haselgrove
Steven M. Hodge
Jean A. Frazier
David N. Kennedy

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00047

4,918 views
3 citations

Methods

Published on 29 Apr 2014

Large-scale automated image analysis for computational profiling of brain tissue surrounding implanted neuroprosthetic devices using Python

Nicolas Rey-Villamizar
Vinay Somasundar
Murad Megjhani
Yan Xu
Yanbin Lu
Raghav Padmanabhan
Kristen Trett
William Shain
Badri Roysam

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00039

10,726 views
17 citations

Methods

Published on 29 Apr 2014

NeuroElectro: a window to the world's neuron electrophysiology data

Shreejoy J. Tripathy
Judith Savitskaya
Shawn D. Burton
Nathaniel N. Urban
Richard C. Gerkin

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00040

18,524 views
122 citations

Original Research

Published on 28 Apr 2014

The Insight ToolKit image registration framework

Brian B. Avants
Nicholas J. Tustison
Michael Stauffer
Gang Song
Baohua Wu
James C. Gee

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00044

45,031 views
646 citations

Technology Report

Published on 23 Apr 2014

High-throughput neuroimaging-genetics computational infrastructure

Ivo D. Dinov
Petros Petrosyan
Zhizhong Liu
Paul Eggert
Sam Hobel
Paul Vespa
Seok Woo Moon
John D. Van Horn
Joseph Franco
Arthur W. Toga

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00041

14,692 views
25 citations

Original Research

Published on 23 Apr 2014

Integrated platform and API for electrophysiological data

Andrey Sobolev
Adrian Stoewer
Aljoscha Leonhardt
Philipp L. Rautenberg
Christian J. Kellner
Christian Garbers
Thomas Wachtler

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00032

10,602 views
12 citations

Original Research

Published on 23 Apr 2014

libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience

Michael Vella
Robert C. Cannon
Sharon Crook
Andrew P. Davison
Gautham Ganapathy
Hugh P. C. Robinson
R. Angus Silver
Padraig Gleeson

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00038

21,365 views
35 citations

Methods

Published on 22 Apr 2014

Efficient generation of connectivity in neuronal networks from simulator-independent descriptions

Mikael Djurfeldt
Andrew P. Davison
Jochen M. Eppler

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00043

8,981 views
10 citations

Methods

Published on 22 Apr 2014

Integrating neuroinformatics tools in TheVirtualBrain

M. Marmaduke Woodman
Laurent Pezard
Lia Domide
Stuart A. Knock
Paula Sanz-Leon
Jochen Mersmann
Anthony R. McIntosh
Viktor Jirsa

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00036

12,778 views
32 citations

Methods

Published on 11 Apr 2014

Python-based geometry preparation and simulation visualization toolkits for STEPS

Weiliang Chen
Erik De Schutter

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00037

14,805 views
6 citations

Methods

Published on 08 Apr 2014

Generic Machine Learning Pattern for Neuroimaging-Genetic Studies in the Cloud

Benoit Da Mota
Radu Tudoran
Alexandru Costan
Gaël Varoquaux
Goetz Brasche
Patricia Conrod
Hervé Lemaitre
Tomas Paus
Marcella Rietschel
Vincent Frouin

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00031

8,846 views
10 citations

Original Research

Published on 07 Apr 2014

Sharing privacy-sensitive access to neuroimaging and genetics data: a review and preliminary validation

Anand D. Sarwate
Sergey M Plis
Jessica A Turner
Mohammad Reza Arbabshirani
Vince D Calhoun

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00035

16,809 views
61 citations

Methods

Published on 07 Apr 2014

An ITK implementation of a physics-based non-rigid registration method for brain deformation in image-guided neurosurgery

Yixun Liu
Andriy Kot
Fotis Drakopoulos
Chengjun Yao
Andrey Fedorov
Andinet Enquobahrie
Olivier Clatz
Nikos P Chrisochoides

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00033

11,103 views
24 citations

Methods

Published on 04 Apr 2014

Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimages

Juan Nunez-Iglesias
Ryan Kennedy
Stephen M Plaza
Anirban Chakraborty
William T Katz

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00034

19,843 views
48 citations

Original Research

Published on 28 Mar 2014

Isotropic non-white matter partial volume effects in constrained spherical deconvolution

Timo Roine
Ben Jeurissen
Daniele Perrone
Jan Aelterman
Alexander Leemans
Wilfried Philips
Jan Sijbers

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00028

8,124 views
60 citations

Methods

Published on 27 Mar 2014

The multi-modal Australian ScienceS Imaging and Visualization Environment (MASSIVE) high performance computing infrastructure: applications in neuroscience and neuroinformatics research

Wojtek James Goscinski
Paul McIntosh
Ulrich Claus Felzmann
Anton Maksimenko
Christopher John Hall
Timur Gureyev
Darren Thompson
Andrew Janke
Graham Galloway
Neil E B Killeen

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00030

15,667 views
93 citations

Review

Published on 26 Mar 2014

A review of multivariate analyses in imaging genetics

Jingyu Liu
Vince D Calhoun

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00029

17,306 views
120 citations

Technology Report

Published on 26 Mar 2014

A web-portal for interactive data exploration, visualization, and hypothesis testing

Hauke Bartsch
Wesley K. Thompson
Terry L. Jernigan
Anders M Dale

Frontiers in Neuroinformatics

doi 10.3389/fninf.2014.00025

12,532 views
34 citations

1,136 articles

articles

Neurovascular Network Explorer 1.0: a database of 2-photon single-vessel diameter measurements with MATLAB® graphical user interface

Corrigendum: Impact of functional MRI data preprocessing pipeline on default-mode network detectability in patients with disorders of consciousness

Estimating Neural Response Functions from fMRI

Reproducibility of graph metrics of human brain structural networks

Variational Bayesian causal connectivity analysis for fMRI

Interactive 3D visualization of structural changes in the brain of a person with corticobasal syndrome

Structure-centered portal for child psychiatry research

Large-scale automated image analysis for computational profiling of brain tissue surrounding implanted neuroprosthetic devices using Python

NeuroElectro: a window to the world's neuron electrophysiology data

The Insight ToolKit image registration framework

High-throughput neuroimaging-genetics computational infrastructure

Integrated platform and API for electrophysiological data

libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience

Efficient generation of connectivity in neuronal networks from simulator-independent descriptions

Integrating neuroinformatics tools in TheVirtualBrain

Python-based geometry preparation and simulation visualization toolkits for STEPS

Generic Machine Learning Pattern for Neuroimaging-Genetic Studies in the Cloud

Sharing privacy-sensitive access to neuroimaging and genetics data: a review and preliminary validation

An ITK implementation of a physics-based non-rigid registration method for brain deformation in image-guided neurosurgery

Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimages

Isotropic non-white matter partial volume effects in constrained spherical deconvolution

The multi-modal Australian ScienceS Imaging and Visualization Environment (MASSIVE) high performance computing infrastructure: applications in neuroscience and neuroinformatics research

A review of multivariate analyses in imaging genetics

A web-portal for interactive data exploration, visualization, and hypothesis testing