Frontiers in Plant Science | Functional and Applied Plant Genomics

Data Report

Accepted on 13 Feb 2025

Genetic Diversity of Hippophae rhamnoides Varieties with Different Fruit Characteristics Based on Whole-Genome Sequencing

in Functional and Applied Plant Genomics

Nataliya V. Melnikova
Alexander A Arkhipov
Yury Zubarev
Roman Novakovskiy
Anastasia Turba
Elena Pushkova
Daiana Zhernova
Anna S Mazina
Ekaterina Dvorianinova
Elizaveta Sigova

Frontiers in Plant Science

doi 10.3389/fpls.2025.1542552

Original Research

Accepted on 13 Feb 2025

Transcriptomic analysis of two Chinese wheat landraces with contrasting Fusarium head blight resistance reveals miRNA-mediated defense mechanisms

in Functional and Applied Plant Genomics

Lijuan Wu
Junqiang Wang
Shian Shen
Zaijun Yang
Xinkun Hu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1537605

Data Report

Accepted on 12 Feb 2025

Chromosome-level assembly of the Isodon lophanthoides genome

in Functional and Applied Plant Genomics

Gao Yubang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1528404

Original Research

Published on 07 Feb 2025

An initial exploration of core collection construction and DNA fingerprinting in Elymus sibiricus L. using SNP markers

in Functional and Applied Plant Genomics

Xinrui Li
Daping Song
Mingfeng Li
Daxu Li
Minghong You
Yan Peng
Jiajun Yan
Shiqie Bai

Frontiers in Plant Science

doi 10.3389/fpls.2025.1534085

287 views

Original Research

Published on 06 Feb 2025

Genotyping-by-sequencing derived SNP markers reveal genetic diversity and population structure of Dactylis glomerata germplasm

in Functional and Applied Plant Genomics

Muhammad Tanveer Altaf
Pablo Federico Cavagnaro
Kağan Kökten
Amjad Ali
Andres Morales
Muhammed Tatar
Mehmet Bedir
Muhammad Azhar Nadeem
Muhammad Aasim
Nafiz Çeliktaş

Frontiers in Plant Science

doi 10.3389/fpls.2025.1530585

361 views

Original Research

Accepted on 05 Feb 2025

Genome-wide Analysis of OPR Family Genes in Vitis vinifera and the Role of VvOPR1 in Copper, Zinc Tolerance

in Functional and Applied Plant Genomics

Shuanghong You
Yuanping Chen
Wenjing Shi
Xue Li
Zheng Wu
Quanhong Yao

Frontiers in Plant Science

doi 10.3389/fpls.2025.1509472

Methods

Published on 03 Feb 2025

Deep phenotyping platform for microscopic plant-pathogen interactions

in Functional and Applied Plant Genomics

Stefanie Lück
Salim Bourras
Dimitar Douchkov

Frontiers in Plant Science

doi 10.3389/fpls.2025.1462694

306 views

Original Research

Accepted on 31 Jan 2025

Profiling of Rhizosphere-Associated Microbial Communities in North Alabama Soils Infested with Varied Levels of Reniform Nematodes

in Functional and Applied Plant Genomics

Sowndarya Karapareddy
Varsha C. Anche
Sowjanya R. Tamatamu
Madhusudhana R. Janga
Kathy Lawrence
Leopold Nyochembeng
Lloyd T. Walker
Venkateswara Rao Sripathi

Frontiers in Plant Science

doi 10.3389/fpls.2025.1521579

Original Research

Published on 29 Jan 2025

GWAS identifies a polyembryony locus in mango: development of KASP and PACE markers for marker-assisted breeding

in Functional and Applied Plant Genomics

Gul Shad Ali
Shamseldeen Eltaher
Jin Li
Barbie Freeman
Sukhwinder Singh

Frontiers in Plant Science

doi 10.3389/fpls.2025.1508027

339 views

Original Research

Published on 28 Jan 2025

Lipidomics-based association study reveals genomic signatures of anti-cancer qualities of pigmented rice sprouts

in Functional and Applied Plant Genomics

Rhowell Navarro Tiozon
Erstelle Pasion-Uy
Saleh Alseekh
Kristel June D. Sartagoda
Shem Gempesaw
Joel H. G. Tolentino
Alisdair R. Fernie
Nese Sreenivasulu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1533442

428 views

Original Research

Accepted on 27 Jan 2025

Transcriptomic analysis of early stages of 'Candidatus Liberibacter asiaticus' infection in susceptible and resistant species after inoculation by Diaphorina citri feeding on young shoots

in Functional and Applied Plant Genomics

Monica Alves
Juan Cifuentes-Arenas
Regina Niñoles
Laudecir Raiol-Junior
Everton Carvalho
Sabela Quirós
Jesus Ferro
Concetta Licciardello
Berta Alquézar
Lourdes Carmona López

Frontiers in Plant Science

doi 10.3389/fpls.2025.1502953

Original Research

Published on 27 Jan 2025

DH2-dependent trans-acting siRNAs regulate leaf and lemma development in rice

in Functional and Applied Plant Genomics

Jun Tang
Tianye Li
Yuanzhuo Gao
Xinghang Li
Ziheng Huang
Hui Zhuang
Guanghua He
Hongfa Luo
Yunfeng Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1534038

808 views

Original Research

Published on 27 Jan 2025

Identification and functional validation of a new gene conferring resistance to Soybean Mosaic Virus strains SC4 and SC20 in soybean

in Functional and Applied Plant Genomics

Muhammad Muzzafar Raza
Huiying Jia
Muhammad Khuram Razzaq
Bowen Li
Kai Li
Junyi Gai

Frontiers in Plant Science

doi 10.3389/fpls.2024.1518829

292 views

Original Research

Published on 24 Jan 2025

Genomic insights into genetic diversity and seed coat color change in common bean composite populations

in Functional and Applied Plant Genomics

Eva Plestenjak
Mohamed Neji
Lovro Sinkovič
Vladimir Meglič
Barbara Pipan

Frontiers in Plant Science

doi 10.3389/fpls.2024.1523745

457 views

Review

Accepted on 22 Jan 2025

Recent Advances in Understanding the Mechanisms of Plant Cadmium Accumulation as Affected by Grafting in Vegetable Production

in Functional and Applied Plant Genomics

Ruimin Zhang
Youzhou Zhu
Hong Li
Na Sun

Frontiers in Plant Science

doi 10.3389/fpls.2025.1526041

Original Research

Published on 22 Jan 2025

Construction and evaluation of Brassica rapa orphan genes overexpression library

in Functional and Applied Plant Genomics

Mingliang Jiang
Zongxiang Zhan
Xiaonan Li
Zhongyun Piao

Frontiers in Plant Science

doi 10.3389/fpls.2025.1532449

520 views

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Articles

Genetic Diversity of Hippophae rhamnoides Varieties with Different Fruit Characteristics Based on Whole-Genome Sequencing

Transcriptomic analysis of two Chinese wheat landraces with contrasting Fusarium head blight resistance reveals miRNA-mediated defense mechanisms

Chromosome-level assembly of the Isodon lophanthoides genome

An initial exploration of core collection construction and DNA fingerprinting in Elymus sibiricus L. using SNP markers

Genotyping-by-sequencing derived SNP markers reveal genetic diversity and population structure of Dactylis glomerata germplasm

Genome-wide Analysis of OPR Family Genes in Vitis vinifera and the Role of VvOPR1 in Copper, Zinc Tolerance

Deep phenotyping platform for microscopic plant-pathogen interactions

Profiling of Rhizosphere-Associated Microbial Communities in North Alabama Soils Infested with Varied Levels of Reniform Nematodes

GWAS identifies a polyembryony locus in mango: development of KASP and PACE markers for marker-assisted breeding

Lipidomics-based association study reveals genomic signatures of anti-cancer qualities of pigmented rice sprouts

Transcriptomic analysis of early stages of 'Candidatus Liberibacter asiaticus' infection in susceptible and resistant species after inoculation by Diaphorina citri feeding on young shoots

DH2-dependent trans-acting siRNAs regulate leaf and lemma development in rice

Identification and functional validation of a new gene conferring resistance to Soybean Mosaic Virus strains SC4 and SC20 in soybean

Genomic insights into genetic diversity and seed coat color change in common bean composite populations

Recent Advances in Understanding the Mechanisms of Plant Cadmium Accumulation as Affected by Grafting in Vegetable Production

Construction and evaluation of Brassica rapa orphan genes overexpression library