Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 17 Dec 2025

Functional genomic investigation of CYP71AJ49 in Peucedanum praeruptorum Dunn: Agrobacterium-mediated overexpression reveals dual roles in drought adaptation and coumarin biosynthesis

in Functional and Applied Plant Genomics

Maosuo Wang
Shenghua Wang
Huifang Chu
Qian Ruan
Jun Dai
Peipei Wei

Frontiers in Plant Science

doi 10.3389/fpls.2025.1707087

140 views

Editorial

Published on 16 Dec 2025

Editorial: Plant genotyping: from traditional markers to modern technologies, volume II

in Functional and Applied Plant Genomics

Yuri Shavrukov
Sunita Gupta
Gulmira Khassanova

Frontiers in Plant Science

doi 10.3389/fpls.2025.1755453

181 views

Original Research

Accepted on 15 Dec 2025

Transcriptomic Insights into Arabinogalactan Protein Mechanism of action in Galactosyltransferase Octuple Mutants

in Functional and Applied Plant Genomics

Damilola A Ayorinde
Gbolaga O Olanrewaju
Allan M Showalter

Frontiers in Plant Science

Original Research

Published on 15 Dec 2025

Genome-wide identification and functional characterization of the two-component system gene family in petunia reveals roles in hormone signaling and stress response

in Functional and Applied Plant Genomics

Binbin Dai
Juntao Huo
Linxia Zhang
Peishan Zou
Miaomiao Sun
Seping Dai
Guofeng Liu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1721349

353 views

Original Research

Accepted on 12 Dec 2025

Genome-Wide Identification and Expression Analysis of the PEBP Gene Family in Ziziphus jujuba var. spinosa

in Functional and Applied Plant Genomics

Xiaojun Ma
Xiaozhou Yang
Xinhong Wang
Xiaohan Tang
Xuexiang Li
Dali Geng
Yuqing Ma
Menglin Pu
Jing Shu

Frontiers in Plant Science

215 views

Original Research

Accepted on 12 Dec 2025

Genomic Analyses of 238 Seed Plants Reveal the Evolutionary Mechanisms Driving Specialization of F3H, ANS, and FLS in Flavonoid Biosynthesis

in Functional and Applied Plant Genomics

Siqi Liu
Zeyu Zhou
Weibin Wang
Cheng Jia
Dawei Li
Tingting Hao
Yue Chen

Frontiers in Plant Science

Original Research

Published on 12 Dec 2025

Functional characterization of EjAP1-like1 reveals its role in floral development and flowering time regulation in loquat (Eriobotrya japonica)

in Functional and Applied Plant Genomics

Yifang Wang
Chongbin Zhao
Xiaoyan Yang
Bin Wang
Ze Peng
Xianghui Yang
Chongjian Ma
Yuan Yuan
Yuanyuan Jiang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1713266

366 views

Data Report

Accepted on 11 Dec 2025

Plastome of Dehaasia pugerensis Koord. & Valeton: A Critically Endangered Lauraceae Species

in Functional and Applied Plant Genomics

Aulia Hasan Widjaya
Andi Salamah
Tety Maryenti
Iyan Robiansyah
Weibang SUN
Mahat Magandhi
Irfan Martiansyah
Muhammad Rifqi Hariri
Aditya Nugroho

Frontiers in Plant Science

104 views

Opinion

Published on 11 Dec 2025

Integrated biotechnological and artificial intelligence innovations for plant improvement

in Functional and Applied Plant Genomics

Haibo Wu
Man Luo
Yubin Liu
Jinghao Yang
Yunpeng Cao

Frontiers in Plant Science

doi 10.3389/fpls.2025.1736707

520 views

Original Research

Published on 11 Dec 2025

BrSQE1 and the ethylene signaling pathway suppress cell division to regulate plant size in Chinese cabbage (Brassica rapa subsp. pekinensis)

in Functional and Applied Plant Genomics

Rui Yang
Qianyun Wang
Yuhong Ren
Yongcheng Li
Jiajie Wang
Daling Feng
Wei Ma
Na Li
Lei Yang
Jianjun Zhao

Frontiers in Plant Science

doi 10.3389/fpls.2025.1702939

314 views

Original Research

Published on 08 Dec 2025

Characterization of CXE genes in pineapple and their aroma-related expression during fruit ripening

in Functional and Applied Plant Genomics

Wenxin Xu
Tangxiu Li
Jing Wu
You Wang
Junting Feng
Aiping Luan
Okandze Poho Pérol Carzorel
Shuqiang He
Junhu He
Chengjie Chen

Frontiers in Plant Science

doi 10.3389/fpls.2025.1733743

354 views

Original Research

Accepted on 05 Dec 2025

Genome-Wide Identification and Characterization of the ALBA Gene Family in Rapeseed (Brassica napus L.) and Its Role in Development and Abiotic Stress Responses

in Functional and Applied Plant Genomics

Penghui Xu
Zhenzhong Chen

Frontiers in Plant Science

322 views

Original Research

Published on 05 Dec 2025

Genetic variation in storage protein and starch biosynthesis genes reveals key associations with seed composition in pea (Pisum sativum)

in Functional and Applied Plant Genomics

Admas Alemu
Kavitha Anguluri
Bo Yuan
René Lametsch
Cecilia Hammenhag

Frontiers in Plant Science

doi 10.3389/fpls.2025.1679498

1,046 views

Opinion

Accepted on 04 Dec 2025

Gene Editing to Enhance Biotic Stress Tolerance in Sugarcane

in Functional and Applied Plant Genomics

Fredy Altpeter

Frontiers in Plant Science

244 views

Original Research

Published on 04 Dec 2025

TPS5 and TOR signaling components are determinants of Populus balsamifera leaf morphology

in Functional and Applied Plant Genomics

Marc J. Champigny
Shankar Pahari
Charles A. Hefer
Salim N. Silim
Shawn D. Mansfield
Raju Y. Soolanayakanahally

Frontiers in Plant Science

doi 10.3389/fpls.2025.1683866

682 views

Original Research

Accepted on 03 Dec 2025

Dualistic MADS-box Evolution Forged Legume Diversity Post-WGD

in Functional and Applied Plant Genomics

Kou Kun
Nan Haiyang
Chen Xinxin
Zhang Jiajia
Zou Mingyang
Shang Erxuan
Guo Xinyi

Frontiers in Plant Science

199 views

Original Research

Published on 03 Dec 2025

Comparing four heat-inducible promoters in stably transformed sugarcane regarding spatial and temporal control of transgene expression reveals candidates to drive stem-preferred transgene expression

in Functional and Applied Plant Genomics

Moni Qiande
Fredy Altpeter

Frontiers in Plant Science

doi 10.3389/fpls.2025.1709171

1,032 views

Editorial

Accepted on 01 Dec 2025

From Genes to Holobionts: Integrative Genomic Approaches to Multifactorial Stress Resilience in Plants

in Functional and Applied Plant Genomics

Somashekhar M Punnuri
MAHENDAR THUDI
Reyazul Rouf Mir

Frontiers in Plant Science

221 views

Original Research

Accepted on 01 Dec 2025

Genome-wide identification of the RPD3/HDA1 gene family in foxtail millet (Setaria italica) and analysis of their association with plant height

in Functional and Applied Plant Genomics

Hongkai Liang
Zhangfei Zhang
Yang Puyuan
Xiaokuo Cui
Liwei Wang
Hui Zhi
Guanqing Jia
Qiang He
Xianmin Diao

Frontiers in Plant Science

118 views

Original Research

Accepted on 01 Dec 2025

Population genomics of Brazilian native fruit species of Eugenia spp. (Myrtaceae) for conservation and improvement

in Functional and Applied Plant Genomics

Laecio Fernandes Souza Sampaio
Maria Imaculada Zucchi
Carlos Colombo
Angelo Pedro Jacomino
Antonio Figueira
Francisco de Assis Alves Mourão Filho

Frontiers in Plant Science

Original Research

Published on 28 Nov 2025

Genome-wide association study and fine-mapping identify a major quantitative trait locus controlling hundred-seed weight in soybean

in Functional and Applied Plant Genomics

Chunlei Zhang
Huilong Hong
Rongqiang Yuan
Shiyao Zhang
Tianjiao Gao
Shuping Yan
Sobhi F. Lamlom
Honglei Ren
Zhangxiong Liu
Jiajun Wang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1716186

714 views

Systematic Review

Published on 28 Nov 2025

Research evolution of flat peach (Prunus persica (L.) Batsch): a decadal bibliometric analysis

in Functional and Applied Plant Genomics

Abebe Misganaw Gedamu
Yong Li
Jinlong Wu
Ke Cao
Muhammad Anees
Zhaohui Wang
Suning Liu
Hongyang Xing
Pengcheng Wei
Muhammad Jehangir

Frontiers in Plant Science

doi 10.3389/fpls.2025.1710142

618 views

Original Research

Published on 26 Nov 2025

Genome-wide analysis of the CrRLK1L gene family in Puccinellia tenuiflora and functional study of PutFER1 in Arabidopsis underpinning salt tolerance

in Functional and Applied Plant Genomics

Gaojian Li
Yulin Peng
Yanshuang Liu
Zhen Wu
Shaojun Dai
Zhi Qin
Meihong Sun

Frontiers in Plant Science

doi 10.3389/fpls.2025.1680452

807 views

Original Research

Published on 26 Nov 2025

MicroRNA identification and expression analysis of wheat thermo-sensitive male sterile line BNS366 for fertility transformation

in Functional and Applied Plant Genomics

Junpeng Chen
Xue Hu
Ruilian Song
Genlou Sun
Sisi Huang
Wei Hua
Jinghuan Zhu
Daorong Zhang
Xifeng Ren

Frontiers in Plant Science

doi 10.3389/fpls.2025.1662041

473 views

622 articles

articles

Functional genomic investigation of CYP71AJ49 in Peucedanum praeruptorum Dunn: Agrobacterium-mediated overexpression reveals dual roles in drought adaptation and coumarin biosynthesis

Editorial: Plant genotyping: from traditional markers to modern technologies, volume II

Transcriptomic Insights into Arabinogalactan Protein Mechanism of action in Galactosyltransferase Octuple Mutants

Genome-wide identification and functional characterization of the two-component system gene family in petunia reveals roles in hormone signaling and stress response

Genome-Wide Identification and Expression Analysis of the PEBP Gene Family in Ziziphus jujuba var. spinosa

Genomic Analyses of 238 Seed Plants Reveal the Evolutionary Mechanisms Driving Specialization of F3H, ANS, and FLS in Flavonoid Biosynthesis

Functional characterization of EjAP1-like1 reveals its role in floral development and flowering time regulation in loquat (Eriobotrya japonica)

Plastome of Dehaasia pugerensis Koord. & Valeton: A Critically Endangered Lauraceae Species

Integrated biotechnological and artificial intelligence innovations for plant improvement

BrSQE1 and the ethylene signaling pathway suppress cell division to regulate plant size in Chinese cabbage (Brassica rapa subsp. pekinensis)

Characterization of CXE genes in pineapple and their aroma-related expression during fruit ripening

Genome-Wide Identification and Characterization of the ALBA Gene Family in Rapeseed (Brassica napus L.) and Its Role in Development and Abiotic Stress Responses

Genetic variation in storage protein and starch biosynthesis genes reveals key associations with seed composition in pea (Pisum sativum)

Gene Editing to Enhance Biotic Stress Tolerance in Sugarcane

TPS5 and TOR signaling components are determinants of Populus balsamifera leaf morphology

Dualistic MADS-box Evolution Forged Legume Diversity Post-WGD

Comparing four heat-inducible promoters in stably transformed sugarcane regarding spatial and temporal control of transgene expression reveals candidates to drive stem-preferred transgene expression

From Genes to Holobionts: Integrative Genomic Approaches to Multifactorial Stress Resilience in Plants

Genome-wide identification of the RPD3/HDA1 gene family in foxtail millet (Setaria italica) and analysis of their association with plant height

Population genomics of Brazilian native fruit species of Eugenia spp. (Myrtaceae) for conservation and improvement

Genome-wide association study and fine-mapping identify a major quantitative trait locus controlling hundred-seed weight in soybean

Research evolution of flat peach (Prunus persica (L.) Batsch): a decadal bibliometric analysis

Genome-wide analysis of the CrRLK1L gene family in Puccinellia tenuiflora and functional study of PutFER1 in Arabidopsis underpinning salt tolerance

MicroRNA identification and expression analysis of wheat thermo-sensitive male sterile line BNS366 for fertility transformation