Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 12 Jul 2024

Transcriptome profiling reveals key regulatory factors and metabolic pathways associated with curd formation and development in broccoli

in Functional and Applied Plant Genomics

Yinxia Zhu
Ce Liu
Mengyao Zhao
Yuxuan Duan
Jingjing Xie
Chunguo Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1418319

2,440 views
2 citations

Original Research

Published on 11 Jul 2024

Genome-wide identification and functional analysis of mRNA m6A writers in soybean under abiotic stress

in Functional and Applied Plant Genomics

Peng Liu
Huijie Liu
Jie Zhao
Tengfeng Yang
Sichao Guo
Luo Chang
Tianyun Xiao
Anjie Xu
Xiaoye Liu
Changhua Zhu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1446591

3,537 views
10 citations

Original Research

Published on 10 Jul 2024

OsG6PGH1 affects various grain quality traits and participates in the salt stress response of rice

in Functional and Applied Plant Genomics

Bo Peng
Yan Liu
Jing Qiu
Jing Peng
Xiaoyu Sun
Xiayu Tian
Zhiguo Zhang
Yaqin Huang
Ruihua Pang
Wei Zhou

Frontiers in Plant Science

doi 10.3389/fpls.2024.1436998

2,758 views
5 citations

Original Research

Published on 10 Jul 2024

Multi-omics analysis of Populus simonii × P. nigra leaves under Hyphantria cunea stress

in Functional and Applied Plant Genomics

Jiahui Jiang
Gaofeng Fan
Ruiqi Wang
Wenjing Yao
Boru Zhou
Tingbo Jiang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1392433

3,508 views
5 citations

Original Research

Published on 09 Jul 2024

Divergent evolution of NLR genes in the genus Glycine: impacts of annuals and perennials’ life history strategies

in Functional and Applied Plant Genomics

Abu Bakar Sultan
Humera Nawaz
Fozia Saleem
Sehar Nawaz
Muhammad Danial
Romana Iftikhar
Umer Maqsood
Amna Areej
Sidra Shakoor
Nada H. Aljarba

Frontiers in Plant Science

doi 10.3389/fpls.2024.1383135

4,769 views
4 citations

Original Research

Published on 08 Jul 2024

Integrated examination of the transcriptome and metabolome of the gene expression response and metabolite accumulation in soybean seeds for seed storability under aging stress

in Functional and Applied Plant Genomics

Guang Li
Jianguo Xie
Wei Zhang
Fanfan Meng
Mingliang Yang
Xuhong Fan
Xingmiao Sun
Yuhong Zheng
Yunfeng Zhang
Mingliang Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1437107

3,328 views
4 citations

Original Research

Published on 02 Jul 2024

Mapping of flumioxazin tolerance in a snap bean diversity panel leads to the discovery of a master genomic region controlling multiple stress resistance genes

in Functional and Applied Plant Genomics

Ana I. Saballos
Matthew D. Brooks
Patrick J. Tranel
Martin M. Williams

Frontiers in Plant Science

doi 10.3389/fpls.2024.1404889

5,024 views
2 citations

Original Research

Published on 01 Jul 2024

Genome-wide analysis of soybean hypoxia inducible gene domain containing genes: a functional investigation of GmHIGD3

in Functional and Applied Plant Genomics

Xiaoyan Geng
Lu Dong
Tiantian Zhu
Chunhong Yang
Jianhua Zhang
Binhui Guo
Huatao Chen
Qun Zhang
Li Song

Frontiers in Plant Science

doi 10.3389/fpls.2024.1403841

2,711 views
1 citation

Original Research

Published on 28 Jun 2024

The complete mitochondrial genome of Pontederia crassipes: using HiFi reads to investigate genome recombination and gene transfer from chloroplast genome

in Functional and Applied Plant Genomics

Zhigang Hao
Xiaoqi Jiang
Lei Pan
Jingyuan Guo
Yi Chen
Jianqiang Li
Biao Liu
Anping Guo
Laixin Luo
Ruizong Jia

Frontiers in Plant Science

doi 10.3389/fpls.2024.1407309

2,702 views
1 citation

Original Research

Published on 24 Jun 2024

Reprogramming of DNA methylation and changes of gene expression in grafted Hevea brasiliensis

in Functional and Applied Plant Genomics

Hui-Liang Li
Ying Wang
Dong Guo
Jia-Hong Zhu
Yu Wang
Hao-Fu Dai
Shi-Qing Peng

Frontiers in Plant Science

doi 10.3389/fpls.2024.1407700

2,728 views
4 citations

Original Research

Published on 21 Jun 2024

Genome-wide association study reveals 18 QTL for major agronomic traits in a Nordic–Baltic spring wheat germplasm

in Functional and Applied Plant Genomics

Andrius Aleliūnas
Andrii Gorash
Rita Armonienė
Ilmar Tamm
Anne Ingver
Māra Bleidere
Valentīna Fetere
Hannes Kollist
Tomasz Mroz
Morten Lillemo

Frontiers in Plant Science

doi 10.3389/fpls.2024.1393170

3,738 views
7 citations

Original Research

Published on 20 Jun 2024

RNA-seq analysis reveals transcriptome reprogramming and alternative splicing during early response to salt stress in tomato root

in Functional and Applied Plant Genomics

Jianghuang Gan
Yongqi Qiu
Yilin Tao
Laining Zhang
Thomas W. Okita
Yanyan Yan
Li Tian

Frontiers in Plant Science

doi 10.3389/fpls.2024.1394223

7,324 views
15 citations

Data Report

Published on 19 Jun 2024

Chromosome-level genome assembly of Ajuga decumbens

in Functional and Applied Plant Genomics

Yubang Gao
Jingzhao Li
Yuli Xie
Teng Zhang
Kai Tian
Xiaotang Li
Lunguang Yao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1413468

3,523 views

Original Research

Published on 18 Jun 2024

Unveiling the “hidden quality” of the walnut pellicle: a precious source of bioactive lipids

in Functional and Applied Plant Genomics

Ramona Abbattista
Noah G. Feinberg
Isabel F. Snodgrass
John W. Newman
Abhaya M. Dandekar

Frontiers in Plant Science

doi 10.3389/fpls.2024.1395543

7,106 views
7 citations

Original Research

Published on 12 Jun 2024

Fine mapping of QYrsv.swust-1BL for resistance to stripe rust in durum wheat Svevo

in Functional and Applied Plant Genomics

Xinli Zhou
Guoyun Jia
Yuqi Luo
Xin Li
Lin Cai
Xianming Chen
Zhensheng Kang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1395223

2,350 views
1 citation

Original Research

Published on 12 Jun 2024

Seed development-related genes contribute to high yield heterosis in integrated utilization of elite autotetraploid and neo-tetraploid rice

in Functional and Applied Plant Genomics

Zijun Lu
Weicong Huang
Qi Ge
Guobin Liang
Lixia Sun
Jinwen Wu
Fozia Ghouri
Muhammad Qasim Shahid
Xiangdong Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1421207

3,113 views
2 citations

Original Research

Published on 06 Jun 2024

Multiple transcription factors involved in the response of Chinese cabbage against Plasmodiophora brassicae

in Functional and Applied Plant Genomics

Sida Meng
Xinyu Yan
Yinglan Piao
Shizhen Li
Xin Wang
Jing Jiang
Yue Liang
Wenxing Pang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1391173

2,990 views
4 citations

Mini Review

Published on 06 Jun 2024

Uncovering the effect of waterlogging stress on plant microbiome and disease development: current knowledge and future perspectives

in Functional and Applied Plant Genomics

Anshika Tyagi
Sajad Ali
Rakeeb Ahmad Mir
Sandhya Sharma
Kumari Arpita
Mohammed A. Almalki
Zahoor Ahmad Mir

Frontiers in Plant Science

doi 10.3389/fpls.2024.1407789

6,809 views
21 citations

Original Research

Published on 05 Jun 2024

Comprehensive analyses of the ARF gene family in cannabis reveals their potential roles in regulating cannabidiol biosynthesis and male flower development

in Functional and Applied Plant Genomics

Gen Pan
Xiaojuan Yang
Jiajia He
Zhenyi Liu
Fengming Chen
Jiayi Chen

Frontiers in Plant Science

doi 10.3389/fpls.2024.1394337

2,622 views
1 citation

Correction

Published on 04 Jun 2024

Corrigendum: SUMOylation of OsPSTOL1 is essential for regulating phosphate starvation responses in rice and Arabidopsis

in Functional and Applied Plant Genomics

Vaishnavi Mukkawar
Dipan Roy
Kawinnat Sue-ob
Andrew Jones
Cunjin Zhang
Prakash Kumar Bhagat
Sumesh M. Kakkunnath
Sigrid Heuer
Ari Sadanandom

Frontiers in Plant Science

doi 10.3389/fpls.2024.1412657

1,304 views

Original Research

Published on 03 Jun 2024

Genome-wide profiling of WRKY genes involved in flavonoid biosynthesis in Erigeron breviscapus

in Functional and Applied Plant Genomics

Wanling Song
Shuangyan Zhang
Qi Li
Guisheng Xiang
Yan Zhao
Fan Wei
Guanghui Zhang
Shengchao Yang
Bing Hao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1412574

3,277 views
8 citations

Original Research

Published on 30 May 2024

Comparative restriction enzyme analysis of methylation (CREAM) reveals methylome variability within a clonal in vitro cannabis population

in Functional and Applied Plant Genomics

Justin Boissinot
Kristian Adamek
Andrew Maxwell Phineas Jones
Eric Normandeau
Brian Boyle
Davoud Torkamaneh

Frontiers in Plant Science

doi 10.3389/fpls.2024.1381154

2,842 views
2 citations

Original Research

Published on 29 May 2024

Integrating GC-MS and comparative transcriptome analysis reveals that TsERF66 promotes the biosynthesis of caryophyllene in Toona sinensis tender leaves

in Functional and Applied Plant Genomics

Jianhua Dai
Minyan Wang
Hengfu Yin
Xiaojiao Han
Yanru Fan
Yi Wei
Jie Lin
Jun Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1378418

2,538 views
2 citations

Original Research

Published on 28 May 2024

Comprehensive analysis of the Spartina alterniflora WD40 gene family reveals the regulatory role of SaTTG1 in plant development

in Functional and Applied Plant Genomics

Maogeng Yang
Shoukun Chen
Jiahui Geng
Shuqiang Gao
Shihua Chen
Huihui Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1390461

2,213 views
1 citation

653 articles

articles

Transcriptome profiling reveals key regulatory factors and metabolic pathways associated with curd formation and development in broccoli

Genome-wide identification and functional analysis of mRNA m6A writers in soybean under abiotic stress

OsG6PGH1 affects various grain quality traits and participates in the salt stress response of rice

Multi-omics analysis of Populus simonii × P. nigra leaves under Hyphantria cunea stress

Divergent evolution of NLR genes in the genus Glycine: impacts of annuals and perennials’ life history strategies

Integrated examination of the transcriptome and metabolome of the gene expression response and metabolite accumulation in soybean seeds for seed storability under aging stress

Mapping of flumioxazin tolerance in a snap bean diversity panel leads to the discovery of a master genomic region controlling multiple stress resistance genes

Genome-wide analysis of soybean hypoxia inducible gene domain containing genes: a functional investigation of GmHIGD3

The complete mitochondrial genome of Pontederia crassipes: using HiFi reads to investigate genome recombination and gene transfer from chloroplast genome

Reprogramming of DNA methylation and changes of gene expression in grafted Hevea brasiliensis

Genome-wide association study reveals 18 QTL for major agronomic traits in a Nordic–Baltic spring wheat germplasm

RNA-seq analysis reveals transcriptome reprogramming and alternative splicing during early response to salt stress in tomato root

Chromosome-level genome assembly of Ajuga decumbens

Unveiling the “hidden quality” of the walnut pellicle: a precious source of bioactive lipids

Fine mapping of QYrsv.swust-1BL for resistance to stripe rust in durum wheat Svevo

Seed development-related genes contribute to high yield heterosis in integrated utilization of elite autotetraploid and neo-tetraploid rice

Multiple transcription factors involved in the response of Chinese cabbage against Plasmodiophora brassicae

Uncovering the effect of waterlogging stress on plant microbiome and disease development: current knowledge and future perspectives

Comprehensive analyses of the ARF gene family in cannabis reveals their potential roles in regulating cannabidiol biosynthesis and male flower development

Corrigendum: SUMOylation of OsPSTOL1 is essential for regulating phosphate starvation responses in rice and Arabidopsis

Genome-wide profiling of WRKY genes involved in flavonoid biosynthesis in Erigeron breviscapus

Comparative restriction enzyme analysis of methylation (CREAM) reveals methylome variability within a clonal in vitro cannabis population

Integrating GC-MS and comparative transcriptome analysis reveals that TsERF66 promotes the biosynthesis of caryophyllene in Toona sinensis tender leaves

Comprehensive analysis of the Spartina alterniflora WD40 gene family reveals the regulatory role of SaTTG1 in plant development