Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 08 Apr 2024

Genome-wide and pan-genomic analysis reveals rich variants of NBS-LRR genes in a newly developed wild rice line from Oryza alta Swallen

in Functional and Applied Plant Genomics

Fimanekeni Ndaitavela Shivute
Yi Zhong
Jinwen Wu
Yueming Bao
Wei Wang
Xiangdong Liu
Zijun Lu
Hang Yu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1345708

3,135 views
1 citation

Original Research

Published on 04 Apr 2024

Low mutation rate of spontaneous mutants enables detection of causative genes by comparing whole genome sequences

in Functional and Applied Plant Genomics

Mao Suganami
Soichi Kojima
Hideki Yoshida
Masaki Mori
Mayuko Kawamura
Eriko Koketsu
Makoto Matsuoka

Frontiers in Plant Science

doi 10.3389/fpls.2024.1366413

4,249 views
1 citation

Original Research

Published on 02 Apr 2024

SmEIL1 transcription factor inhibits tanshinone accumulation in response to ethylene signaling in Salvia miltiorrhiza

in Functional and Applied Plant Genomics

Xiujuan Li
Man Xu
Ke Zhou
Siyu Hao
Liqin Li
Leran Wang
Wei Zhou
Guoyin Kai

Frontiers in Plant Science

doi 10.3389/fpls.2024.1356922

3,057 views
6 citations

Original Research

Published on 27 Mar 2024

Genome-wide association studies identified OsTMF as a gene regulating rice seed germination under salt stress

in Functional and Applied Plant Genomics

Lifeng Liu
Yanling Ma
Heng Zhao
Lin Guo
Yan Guo
Chun-Ming Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1384246

3,817 views
7 citations

Original Research

Published on 27 Mar 2024

Genome-wide association study and haplotype analysis reveal novel candidate genes for resistance to powdery mildew in soybean

in Functional and Applied Plant Genomics

Guoqiang Liu
Yuan Fang
Xueling Liu
Jiacan Jiang
Guangquan Ding
Yongzhen Wang
Xueqian Zhao
Xiaomin Xu
Mengshi Liu
Yingxiang Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1369650

4,481 views
8 citations

Original Research

Published on 25 Mar 2024

Genome-wide analysis of NPR1-like genes in citrus species and expression analysis in response to citrus canker (Xanthomonas axonopodis pv. citri)

in Functional and Applied Plant Genomics

Mobeen Ali
Muhammad Shafiq
Muhammad Zeshan Haider
Adnan Sami
Pravej Alam
Thamir Albalawi
Zuha Kamran
Saleh Sadiq
Mujahid Hussain
Muhammad Adnan Shahid

Frontiers in Plant Science

doi 10.3389/fpls.2024.1333286

4,839 views
16 citations

Original Research

Published on 21 Mar 2024

Genome-wide identification of GATA transcription factors in tetraploid potato and expression analysis in differently colored potato flesh

in Functional and Applied Plant Genomics

Xia Zhang
Rong Fan
Zhuo Yu
Xuerun Du
Xinyue Yang
Huiting Wang
Wenfeng Xu
Xiaoxia Yu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1330559

2,875 views
7 citations

Original Research

Published on 19 Mar 2024

Dissection of quantitative trait nucleotides and candidate genes associated with agronomic and yield-related traits under drought stress in rapeseed varieties: integration of genome-wide association study and transcriptomic analysis

in Functional and Applied Plant Genomics

Maryam Salami
Bahram Heidari
Bahram Alizadeh
Jacqueline Batley
Jin Wang
Xiao-Li Tan
Ali Dadkhodaie
Christopher Richards

Frontiers in Plant Science

doi 10.3389/fpls.2024.1342359

5,560 views
27 citations

Original Research

Published on 18 Mar 2024

Genetic analysis of cassava brown streak disease root necrosis using image analysis and genome-wide association studies

in Functional and Applied Plant Genomics

Leah Nandudu
Christopher Strock
Alex Ogbonna
Robert Kawuki
Jean-Luc Jannink

Frontiers in Plant Science

doi 10.3389/fpls.2024.1360729

3,527 views
3 citations

Original Research

Published on 13 Mar 2024

Chromosome-level genome of Thymus mandschuricus reveals molecular mechanism of aroma compounds biosynthesis

in Functional and Applied Plant Genomics

Lin Jia
Ning Xu
Bin Xia
Wenjie Gao
Qingran Meng
Qiang Li
Ying Sun
Shoubin Xu
Miao He
Huiyan Gu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1368869

3,622 views
1 citation

Original Research

Published on 11 Mar 2024

Physiological and biochemical mechanisms underlying the role of anthocyanin in acquired tolerance to salt stress in peanut (Arachis hypogaea L.)

in Functional and Applied Plant Genomics

Guanghui Li
Xin Guo
Yanbin Sun
Sunil S. Gangurde
Kun Zhang
Fubin Weng
Guanghao Wang
Huan Zhang
Aiqin Li
Xingjun Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1368260

6,779 views
16 citations

Original Research

Published on 07 Mar 2024

SUMOylation of OsPSTOL1 is essential for regulating phosphate starvation responses in rice and Arabidopsis

in Functional and Applied Plant Genomics

Vaishnavi Mukkawar
Dipan Roy
Kawinnat Sue-ob
Andrew Jones
Cunjin Zhang
Prakash Kumar Bhagat
Sumesh M. Kakkunnath
Sigrid Heuer
Ari Sadanandom

Frontiers in Plant Science

doi 10.3389/fpls.2024.1274610

3,966 views
4 citations

Original Research

Published on 07 Mar 2024

Genomic insights into the clonal reproductive Opuntia cochenillifera: mitochondrial and chloroplast genomes of the cochineal cactus for enhanced understanding of structural dynamics and evolutionary implications

in Functional and Applied Plant Genomics

Jing Liu
Yuqing Feng
Cheng Chen
Jing Yan
Xinyu Bai
Huiru Li
Chen Lin
Yinan Xiang
Wen Tian
Zhechen Qi

Frontiers in Plant Science

doi 10.3389/fpls.2024.1347945

4,226 views
3 citations

Original Research

Published on 06 Mar 2024

Novel SNP markers for flowering and seed quality traits in faba bean (Vicia faba L.): characterization and GWAS of a diversity panel

in Functional and Applied Plant Genomics

Hannah Ohm
Johanna Åstrand
Alf Ceplitis
Diana Bengtsson
Cecilia Hammenhag
Aakash Chawade
Åsa Grimberg

Frontiers in Plant Science

doi 10.3389/fpls.2024.1348014

7,113 views
16 citations

Original Research

Published on 06 Mar 2024

The complete mitochondrial genome of Aglaia odorata, insights into its genomic structure and RNA editing sites

in Functional and Applied Plant Genomics

Zhigang Hao
Zhiping Zhang
Jinan Zhang
Xiufen Cui
Jianqiang Li
Laixin Luo
Yingbin Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1362045

3,351 views
10 citations

Original Research

Published on 05 Mar 2024

Using ddRADseq to assess the genetic diversity of in-farm and gene bank cacao resources in the Baracoa region, eastern Cuba, for use and conservation purposes

in Functional and Applied Plant Genomics

Angel Rafael Ramirez-Ramirez
Khaled Mirzaei
Miguel Menéndez-Grenot
Pablo Clapé-Borges
Georgina Espinosa-Lopéz
Igor Bidot-Martínez
Pierre Bertin

Frontiers in Plant Science

doi 10.3389/fpls.2024.1367632

3,776 views
4 citations

Original Research

Published on 04 Mar 2024

Deep learning methods improve genomic prediction of wheat breeding

in Functional and Applied Plant Genomics

Abelardo Montesinos-López
Leonardo Crespo-Herrera
Susanna Dreisigacker
Guillermo Gerard
Paolo Vitale
Carolina Saint Pierre
Velu Govindan
Zerihun Tadesse Tarekegn
Moisés Chavira Flores
Paulino Pérez-Rodríguez

Frontiers in Plant Science

doi 10.3389/fpls.2024.1324090

7,037 views
28 citations

Original Research

Published on 28 Feb 2024

Identification of pleiotropic loci mediating structural and non-structural carbohydrate accumulation within the sorghum bioenergy association panel using high-throughput markers

in Functional and Applied Plant Genomics

Neeraj Kumar
J. Lucas Boatwright
Richard E. Boyles
Zachary W. Brenton
Stephen Kresovich

Frontiers in Plant Science

doi 10.3389/fpls.2024.1356619

3,519 views
8 citations

Original Research

Published on 26 Feb 2024

Gene-edited Mtsoc1 triple mutant Medicago plants do not flower

in Functional and Applied Plant Genomics

Axel Poulet
Min Zhao
Yongyan Peng
FangFei Tham
Mauren Jaudal
Lulu Zhang
Josien C. van Wolfswinkel
Joanna Putterill

Frontiers in Plant Science

doi 10.3389/fpls.2024.1357924

4,179 views
9 citations

Original Research

Published on 26 Feb 2024

“Genome-wide identification of bZIP gene family in Pearl millet and transcriptional profiling under abiotic stress, phytohormonal treatments; and functional characterization of PgbZIP9”

in Functional and Applied Plant Genomics

Deepak Kumar Jha
Jeky Chanwala
Preeti Barla
Nrisingha Dey

Frontiers in Plant Science

doi 10.3389/fpls.2024.1352040

11,589 views
16 citations

Original Research

Published on 23 Feb 2024

Comparative quantitative trait loci analysis framework reveals relationships between salt stress responsive phenotypes and pathways

in Functional and Applied Plant Genomics

Sunadda Phosuwan
Noppawan Nounjan
Piyada Theerakulpisut
Meechai Siangliw
Varodom Charoensawan

Frontiers in Plant Science

doi 10.3389/fpls.2024.1264909

5,139 views
7 citations

Original Research

Published on 15 Feb 2024

Development of KASP markers assisted with soybean drought tolerance in the germination stage based on GWAS

in Functional and Applied Plant Genomics

Qianru Jia
Miaomiao Zhou
Yawen Xiong
Junyan Wang
Donghe Xu
Hongmei Zhang
Xiaoqing Liu
Wei Zhang
Qiong Wang
Xin Sun

Frontiers in Plant Science

doi 10.3389/fpls.2024.1352379

4,806 views
18 citations

Review

Published on 12 Feb 2024

Regulatory frameworks involved in the floral induction, formation and developmental programming of woody horticultural plants: a case study on blueberries

in Functional and Applied Plant Genomics

Guo-qing Song
Zongrang Liu
Gan-yuan Zhong

Frontiers in Plant Science

doi 10.3389/fpls.2024.1336892

4,761 views
8 citations

Review

Published on 08 Feb 2024

Current progress in research focused on salt tolerance in Vitis vinifera L.

in Functional and Applied Plant Genomics

Yan Han
Xiujie Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1353436

4,735 views
14 citations

653 articles

articles

Genome-wide and pan-genomic analysis reveals rich variants of NBS-LRR genes in a newly developed wild rice line from Oryza alta Swallen

Low mutation rate of spontaneous mutants enables detection of causative genes by comparing whole genome sequences

SmEIL1 transcription factor inhibits tanshinone accumulation in response to ethylene signaling in Salvia miltiorrhiza

Genome-wide association studies identified OsTMF as a gene regulating rice seed germination under salt stress

Genome-wide association study and haplotype analysis reveal novel candidate genes for resistance to powdery mildew in soybean

Genome-wide analysis of NPR1-like genes in citrus species and expression analysis in response to citrus canker (Xanthomonas axonopodis pv. citri)

Genome-wide identification of GATA transcription factors in tetraploid potato and expression analysis in differently colored potato flesh

Dissection of quantitative trait nucleotides and candidate genes associated with agronomic and yield-related traits under drought stress in rapeseed varieties: integration of genome-wide association study and transcriptomic analysis

Genetic analysis of cassava brown streak disease root necrosis using image analysis and genome-wide association studies

Chromosome-level genome of Thymus mandschuricus reveals molecular mechanism of aroma compounds biosynthesis

Physiological and biochemical mechanisms underlying the role of anthocyanin in acquired tolerance to salt stress in peanut (Arachis hypogaea L.)

SUMOylation of OsPSTOL1 is essential for regulating phosphate starvation responses in rice and Arabidopsis

Genomic insights into the clonal reproductive Opuntia cochenillifera: mitochondrial and chloroplast genomes of the cochineal cactus for enhanced understanding of structural dynamics and evolutionary implications

Novel SNP markers for flowering and seed quality traits in faba bean (Vicia faba L.): characterization and GWAS of a diversity panel

The complete mitochondrial genome of Aglaia odorata, insights into its genomic structure and RNA editing sites

Using ddRADseq to assess the genetic diversity of in-farm and gene bank cacao resources in the Baracoa region, eastern Cuba, for use and conservation purposes

Deep learning methods improve genomic prediction of wheat breeding

Identification of pleiotropic loci mediating structural and non-structural carbohydrate accumulation within the sorghum bioenergy association panel using high-throughput markers

Gene-edited Mtsoc1 triple mutant Medicago plants do not flower

“Genome-wide identification of bZIP gene family in Pearl millet and transcriptional profiling under abiotic stress, phytohormonal treatments; and functional characterization of PgbZIP9”

Comparative quantitative trait loci analysis framework reveals relationships between salt stress responsive phenotypes and pathways

Development of KASP markers assisted with soybean drought tolerance in the germination stage based on GWAS

Regulatory frameworks involved in the floral induction, formation and developmental programming of woody horticultural plants: a case study on blueberries

Current progress in research focused on salt tolerance in Vitis vinifera L.