Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 20 Jun 2025

Screening and identification of grain sorghum germplasm for salt tolerance at seedling stage

in Functional and Applied Plant Genomics

Yu Wang
Dongyang Li
Chunjuan Liu
Xiaolong Shi
Yan Huang
Chang Liu
Yufei Zhou

Frontiers in Plant Science

doi 10.3389/fpls.2025.1610685

447 views

Data Report

Published on 20 Jun 2025

Whole genome sequencing of Neolamarckia macrophylla (Roxb.) Bosser and Neolamarckia cadamba (Roxb.) Bosser from Indonesia: a vital resource for completing chloroplast genomes and mining microsatellite markers

in Functional and Applied Plant Genomics

Fifi Gus Dwiyanti
Irsyad Kamal
Rahadian Pratama
Dhika Syaputra
Evayusvita Rustam
Ratna Uli Damayanti
Iskandar Z. Siregar
Dede J. Sudrajat

Frontiers in Plant Science

doi 10.3389/fpls.2025.1608577

401 views

Original Research

Accepted on 19 Jun 2025

Genome-wide identification, characterization, and expression analysis of the SOS1 gene family in the medicinal plant Paeonia ostii under salt stress

in Functional and Applied Plant Genomics

Yahong Chen
Huabing Liang
Zhanchang Wang
Quaid Hussain
Xuexiong Zhang
Fazhi Chen
Xiaohua Wang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1614011

389 views

Original Research

Published on 19 Jun 2025

Genome-wide identification, transcriptional profiling, and miRNA-binding site analysis of the LBD gene family in the camphor tree

in Functional and Applied Plant Genomics

Jiaqi Zhang
Luyang Shan
Haoran Qi
Caihui Chen
Yongda Zhong
Meng Xu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1591736

362 views

Original Research

Accepted on 18 Jun 2025

Integrated transcriptome, GWAS and metabolome revealed the mechanism of seed germination in sorghum

in Functional and Applied Plant Genomics

Lan Ju
Ruizhen Liu
Xiaoqiang Cheng
Yao Wang
Xin Lv
Jianqiang Chu
Hao Niu
Haisheng Yan
Yubin Wang
Fangfang Fan

Frontiers in Plant Science

doi 10.3389/fpls.2025.1601899

213 views

Original Research

Published on 13 Jun 2025

Genome-wide identification and characterization of soybean GH9 endo-1,4-β-glucanases

in Functional and Applied Plant Genomics

Weimin Zhan
Huijuan Huang
Zaipan Cai
Zhenwei Zhao
Xuefu Lin
Yize Peng
Zhicheng Dong
Di Qin
Li Jiang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1597668

632 views

Original Research

Published on 13 Jun 2025

Complete sequencing of the mitochondrial genome of tea plant Camellia sinensis cv. ‘Baihaozao’: multichromosomal structure, phylogenetic relationships, and adaptive evolutionary analysis

in Functional and Applied Plant Genomics

Zhiyin Chen
Zixu Wang
Wei Zhou
Sijie Liu
Yuxin Xiao
Yihui Gong

Frontiers in Plant Science

doi 10.3389/fpls.2025.1604404

584 views

Original Research

Accepted on 12 Jun 2025

Gene flow from weedy rice to T1c-19 transgenic rice stacked with cry1C*/bar genes and fitness of F1 hybrids

in Functional and Applied Plant Genomics

Guang-Le Xie
Jia-Qi Shen
Min Wang
Ji-Kun Li
Yao Huang
Sheng Qiang
Xiaoling Song
Wei-Min Dai

Frontiers in Plant Science

doi 10.3389/fpls.2025.1513367

215 views

Editorial

Published on 10 Jun 2025

Editorial: Improving yield and quality of cereal crops: exploring and utilizing genes for green and efficient traits

in Functional and Applied Plant Genomics

Hao Zhou
Yuqing He
Ming Luo

Frontiers in Plant Science

doi 10.3389/fpls.2025.1617702

634 views

Original Research

Published on 09 Jun 2025

A BERT-based rice enhancer identification model combined with sequence-representation differential entropy interpretation

in Functional and Applied Plant Genomics

Yajing Pu
Xintong Hao
Zhaoqi Zheng
Huiyan Ma
Zhibin Lv

Frontiers in Plant Science

doi 10.3389/fpls.2025.1618174

1,052 views

Original Research

Published on 06 Jun 2025

GWAS and RNA-seq reveal novel loci and genes of low-nitrogen tolerance in cucumber (Cucumis sativus L.)

in Functional and Applied Plant Genomics

Huaxiang Wu
Huiming Yan
Bowen Li
Yike Han
Nan Liu
Mengyu Fan
Yahan Liu
Mingjie Lyu
Shengli Du
Aimin Wei

Frontiers in Plant Science

doi 10.3389/fpls.2025.1602360

1,611 views

Original Research

Published on 05 Jun 2025

Comparative transcriptomics in B73-teosinte near-isogenic maize lines reveals key defense signaling and phytoalexins in response to Cercospora zeina infection

in Functional and Applied Plant Genomics

Xiaomeng Sun
Ruiyu Zhang
Zongping Wang
Haotian Zhang
Hairun Wen
Junli Zhang
Naibin Yu
Zhe Wang
Huanhuan Tai
Qin Yang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1580016

1,019 views

Original Research

Published on 05 Jun 2025

IRGL-RRI: interpretable graph representation learning for plant RNA–RNA interaction discovery

in Functional and Applied Plant Genomics

Qingquan Liao
Xuchong Liu
Wei Zhao
Yu Tong
Fangzheng Xu
Xinxin Liu
Yifan Chen

Frontiers in Plant Science

doi 10.3389/fpls.2025.1617495

751 views

Review

Published on 04 Jun 2025

Research progress of NAC transcription factors in woody plants

in Functional and Applied Plant Genomics

Huan Zhang
Jia Zhao
Tongxing Zhang
Guiying Wang
Zhixiao Han
Yuemei Meng
Jingran Bi
Yachao Ren
Minsheng Yang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1592898

706 views

Mini Review

Published on 03 Jun 2025

Foundation models in plant molecular biology: advances, challenges, and future directions

in Functional and Applied Plant Genomics

Feng Xu
Tianhao Wu
Qian Cheng
Xiangfeng Wang
Jun Yan

Frontiers in Plant Science

doi 10.3389/fpls.2025.1611992

1,628 views

Original Research

Published on 30 May 2025

Systematic identification and analysis of WRKY transcription factors reveals the role of MrWRKY14 in Myrica rubra

in Functional and Applied Plant Genomics

Xiurun Fan
Minghui Chen
Huiling Zhang
Yumeng Liu
Meng Yang
Chengyang Ye
Hailing Gu
Kai Xu
Boping Wu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1602750

743 views