Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 30 May 2025

Intensifying cropping sequences in the US Central Great Plains: an in silico analysis of a sorghum–wheat sequence

in Functional and Applied Plant Genomics

Lucia Marziotte
Ana J. P. Carcedo
Daniel Rodriguez
Laura Mayor
P. V. Vara Prasad
Ignacio A. Ciampitti

Frontiers in Plant Science

doi 10.3389/fpls.2025.1525128

862 views

Original Research

Published on 23 May 2025

Genome-wide identification and development of SSR molecular markers for genetic diversity studies in Ilex asprella

in Functional and Applied Plant Genomics

Jingchun Li
Changqian Quan
Rongchang Wei
Fan Wei
Qing Ma
Yuquan Huang
Meihua Xu
Danfeng Tang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1582154

803 views

Original Research

Published on 21 May 2025

Integrated metabolome-transcriptome analyses reveal key pathways regulating staminate catkin development and pollen maturation in Betula platyphylla

in Functional and Applied Plant Genomics

Xinying Liu
Jiayuan Shi
Jingyun Zhang
Bello Hassan Jakada
HuiLing Guo
Kehao Zeng
Xingguo Lan

Frontiers in Plant Science

doi 10.3389/fpls.2025.1581560

869 views

Original Research

Published on 16 May 2025

Selection and validation of reference genes for quantitative real-time PCR during the developmental stages of seeds in Sophora davidii

in Functional and Applied Plant Genomics

Jingjing Li
Shanrong Han
Zongren Xu
Bin Deng
Na Zheng
Yaqiong Su
Ziyao Qiao
Yun Yang
Hong Zhang
Zongsuo Liang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1485586

902 views

Data Report

Published on 16 May 2025

Transcriptome map and genome annotation of flax line 3896

in Functional and Applied Plant Genomics

Daiana A. Zhernova
Alexander A. Arkhipov
Tatiana A. Rozhmina
Alexander A. Zhuchenko
Nadezhda L. Bolsheva
Elizaveta A. Sigova
Ekaterina M. Dvorianinova
Elena V. Borkhert
Elena N. Pushkova
Nataliya V. Melnikova

Frontiers in Plant Science

doi 10.3389/fpls.2025.1520832

915 views

Original Research

Published on 14 May 2025

Characterization analyses of MADS-box genes highlighting their functions with seed development in Ricinus communis

in Functional and Applied Plant Genomics

Jing Sun
Zekun Zhou
Fanqing Meng
Mengyun Wen
Aizhong Liu
Anmin Yu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1589915

811 views

Original Research

Published on 13 May 2025

Identification of key genes associated with mesocotyl length through a genome-wide association study in rice

in Functional and Applied Plant Genomics

Li Xue
Sen Wang
Qiuyu Zhang
Bing Han
Di Cui
Longzhi Han
Jianxin Deng
Xiaoding Ma

Frontiers in Plant Science

doi 10.3389/fpls.2025.1546580

680 views

Original Research

Published on 12 May 2025

StSN2 enhances tuber formation in potato via upregulating of the ABA signaling pathway

in Functional and Applied Plant Genomics

Shifeng Liu
Yichen Wang
Luopin Li
Lang Yan
Xiyao Wang
Qiang Wang
Xianjun Lai

Frontiers in Plant Science

doi 10.3389/fpls.2025.1566237

1,105 views

Original Research

Published on 12 May 2025

Genome-wide identification of the HD-ZIP IV gene family in Pogostemon cablin and its association with glandular hair development

in Functional and Applied Plant Genomics

Shuqi Xie
Yiling Li
Huiting Liao
Wenyi Chen
Yuqi Zhang
Xiaoming Yan
Hongyi Zhang
Mengling He
Hanjing Yan

Frontiers in Plant Science

doi 10.3389/fpls.2025.1580351

856 views

Original Research

Published on 09 May 2025

Prolonged heat stress in Brassica napus during flowering negatively impacts yield and alters glucosinolate and sugars metabolism

in Functional and Applied Plant Genomics

Mariam Kourani
Maria Anastasiadi
John P. Hammond
Fady Mohareb

Frontiers in Plant Science

doi 10.3389/fpls.2025.1507338

1,411 views
1 citation

Original Research

Published on 09 May 2025

Genome-wide analysis of the laccase gene family in tossa jute (Corchorus olitorius): insights into stem development, lignification, and responses to abiotic stress

in Functional and Applied Plant Genomics

Deepak Kumar Jha
Subhadarshini Parida
Seema Pradhan
Nrisingha Dey
Shuvobrata Majumder

Frontiers in Plant Science

doi 10.3389/fpls.2025.1568674

1,567 views
1 citation

Original Research

Published on 09 May 2025

QTL mapping of flowering time in Brassica napus: a study on the interplay between temperature and day length after vernalization

in Functional and Applied Plant Genomics

Eva Heinrich
Antje Schierholt
Christian Möllers

Frontiers in Plant Science

doi 10.3389/fpls.2025.1513353

933 views

Editorial

Published on 08 May 2025

Editorial: Insights in functional and applied plant genomics: 2023

in Functional and Applied Plant Genomics

Huihui Li

Frontiers in Plant Science

doi 10.3389/fpls.2025.1615289

865 views

Editorial

Published on 25 Apr 2025

Editorial: Soybean breeding for abiotic stress tolerance: towards sustainable agriculture

in Functional and Applied Plant Genomics

Huatao Chen
Li Song
Henry T. Nguyen
Donghe Xu
Chengfu Su

Frontiers in Plant Science

doi 10.3389/fpls.2025.1578039

1,103 views

Original Research

Published on 24 Apr 2025

Identification and characterization of Csa-miR159s and their expression patterns under different abiotic stresses in cucumber (Cucumis sativus L.)

in Functional and Applied Plant Genomics

Zhenxiang Zhao
Wenhong Ao
Weirong Luo
Yaoguang Sun
Vijay Yadav Tokala
Junjun Liu
Shenshen Zhi
Yongdong Sun

Frontiers in Plant Science

doi 10.3389/fpls.2025.1518406

1,130 views

Original Research

Published on 17 Apr 2025

Identification of novel candidate genes for regulating oil composition in soybean seeds under environmental stresses

in Functional and Applied Plant Genomics

Patrick Bewick
Peter Forstner
Bo Zhang
Eva Collakova

Frontiers in Plant Science

doi 10.3389/fpls.2025.1572319

1,364 views