Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 30 Jul 2025

Genome-wide identification, characterization, and expression analysis of the SOS1 gene family in the medicinal plant Paeonia ostii under salt stress

in Functional and Applied Plant Genomics

Yahong Chen
Huabing Liang
Zhanchang Wang
Quaid Hussain
Xuexiong Zhang
Fazhi Chen
Xiaohua Wang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1614011

2,324 views
1 citation

Original Research

Published on 25 Jul 2025

Association mapping and candidate gene identification for drought tolerance in sorghum

in Functional and Applied Plant Genomics

Huiting Min
Kang Wang
Tiantian Wang
Xinxiu Cheng
Ephrem Habyarimana
Yongfei Wang
Die Hu
Yi-Hong Wang
Lihua Wang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1629615

3,316 views
1 citation

Correction

Published on 23 Jul 2025

Correction: Mitochondrial genome assembly and comparative analysis of decaploid Camellia hainanica

in Functional and Applied Plant Genomics

Shihui Zhang
Yuyan Zhang
Sheng Luo
Jie Gao
Haiyan Hu
Jinping Liu
Wenqiang Wu
Jian Wang
Xiaolong Huang
Hanggui Lai

Frontiers in Plant Science

doi 10.3389/fpls.2025.1658310

837 views

Original Research

Published on 23 Jul 2025

GWAS analysis of Fusarium head blight resistance in a Nordic-Baltic spring wheat panel

in Functional and Applied Plant Genomics

Shayan Syed
Andrius Aleliūnas
Rita Armonienė
Gintaras Brazauskas
Andrii Gorash

Frontiers in Plant Science

doi 10.3389/fpls.2025.1604296

2,256 views

Original Research

Published on 22 Jul 2025

Gene flow from weedy rice to T1c-19 transgenic rice stacked with cry1C*/bar genes and fitness of F1 hybrids

in Functional and Applied Plant Genomics

Guang-Le Xie
Jia-Qi Shen
Min Wang
Ji-Kun Li
Yao Huang
Sheng Qiang
Xiao-Ling Song
Wei-Min Dai

Frontiers in Plant Science

doi 10.3389/fpls.2025.1513367

1,647 views
1 citation

Original Research

Published on 21 Jul 2025

Conservation and valorization of Italian potato biodiversity through genotype-by-sequencing (GBS)

in Functional and Applied Plant Genomics

M. Martina
R. Natale
E. Vergnano
A. M. Milani
S. Biricolti
L. Andrenelli
E. Portis

Frontiers in Plant Science

doi 10.3389/fpls.2025.1629306

1,958 views

Original Research

Published on 18 Jul 2025

Identification of two new GRAS transcription factors and expression analysis of these genes in Chenopodium quinoa

in Functional and Applied Plant Genomics

Xinwen Hou
Shuwei Wang
Shanmin Zhou
Weizhong Liu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1579338

1,771 views

Editorial

Published on 18 Jul 2025

Editorial: Omics applications in agriculture systems: unveiling functionality and practicality

in Functional and Applied Plant Genomics

Dinesh Adhikary
Joann Mudge
Thiruvarangan Ramaraj

Frontiers in Plant Science

doi 10.3389/fpls.2025.1642175

1,597 views

Original Research

Published on 17 Jul 2025

Gh_FBL43 regulates the resistance of Gossypium hirsutum to Verticillium wilt through jasmonic acid and flavonoid-related pathways

in Functional and Applied Plant Genomics

Jieyin Zhao
Xuening Su
Wenju Gao
Tingwei Wang
Yuxiang Wang
Quanjia Chen
Yanying Qu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1620947

2,023 views
1 citation

Original Research

Published on 17 Jul 2025

Integrated transcriptome, GWAS, and metabolome revealed the mechanism of seed germination in sorghum

in Functional and Applied Plant Genomics

Lan Ju
Ruizhen Liu
Xiaoqiang Cheng
Yao Wang
Xin Lv
Jianqiang Chu
Hao Niu
Haisheng Yan
Yubin Wang
Fangfang Fan

Frontiers in Plant Science

doi 10.3389/fpls.2025.1601899

2,667 views
1 citation

Original Research

Published on 16 Jul 2025

SaGP: identifying plant saline-alkali tolerance genes based on machine learning techniques

in Functional and Applied Plant Genomics

Baixue Qiao
Wentao Gao
Xudong Zhang
Min Du
Shuda Wang
Xuanrui Liu
Shaozi Pang
Chunxue Yang
Jiang Wang
Yuming Zhao

Frontiers in Plant Science

doi 10.3389/fpls.2025.1629794

1,890 views

Editorial

Published on 11 Jul 2025

Editorial: Genomics-driven advances in crop productivity and stress resilience

in Functional and Applied Plant Genomics

Parimalan Rangan
Robert Henry
Ambika Baldev Gaikwad

Frontiers in Plant Science

doi 10.3389/fpls.2025.1645714

1,938 views

Original Research

Published on 02 Jul 2025

Characterization of the complete chloroplast genome and comparative analysis of the phylogeny and codon usage bias of three Yunnan wild rice species

in Functional and Applied Plant Genomics

Rongxin Li
Bo Wang
Suqin Xiao
Ling Chen
Fuyou Yin
Jinlu Li
Cong Jiang
Dunyu Zhang
Qiaofang Zhong
Yun Zhang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1555104

1,683 views

Original Research

Published on 02 Jul 2025

Unraveling yield heterosis in Chinese cabbage hybrid by comparative transcriptomic analysis and LHCB1 gene function analysis

in Functional and Applied Plant Genomics

Ruihua Wang
Min Han
Taili Han
Ligong Xu
Yuanyuan Li

Frontiers in Plant Science

doi 10.3389/fpls.2025.1627259

1,543 views

Original Research

Published on 01 Jul 2025

Integrated morphophysiological, transcriptomic, and metabolomic data uncover the molecular mechanism of environmental adaptation of Zanthoxylum armatum with different latitudinal gradients

in Functional and Applied Plant Genomics

Yuan Guo
Xueqian Fu
Chong Sun
Yifei Deng
Han Liu
Long Tong
Mi Kuang
Ning Tang
Wenying Yang
Xia Liu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1622956

1,764 views
1 citation

Original Research

Published on 30 Jun 2025

Mapping QTLs for Pyricularia leaf spot, nematode resistance, and yield related traits in pearl millet [Cenchrus americanus (L.) Morrone]

in Functional and Applied Plant Genomics

Sairam Vutla
Joseph E. Knoll
Anvesh Sankuratri
Risha G. Nayak
Limei Liu
Peng W. Chee
Raghupathy Karthikeyan
Bashasab Fakrudin
Mahendar Thudi
Patricia Timper

Frontiers in Plant Science

doi 10.3389/fpls.2025.1588485

1,893 views

Original Research

Published on 30 Jun 2025

Mitochondrial genome assembly and comparative analysis of decaploid Camellia hainanica

in Functional and Applied Plant Genomics

Shihui Zhang
Yuyan Zhang
Sheng Luo
Jie Gao
Haiyan Hu
Jinping Liu
Wenqiang Wu
Jian Wang
Xiaolong Huang
Hanggui Lai

Frontiers in Plant Science

doi 10.3389/fpls.2025.1556379

2,084 views
2 citations

Editorial

Published on 27 Jun 2025

Editorial: Genetic resources and conservation strategies for neotropical plant biodiversity

in Functional and Applied Plant Genomics

Enéas Ricardo Konzen
Miklos Maximiliano Bajay
Jorge Carlos Berny Mier y Teran
Marcos Vinícius Bohrer Monteiro Siqueira

Frontiers in Plant Science

doi 10.3389/fpls.2025.1629546

1,276 views

Original Research

Published on 25 Jun 2025

Improving Soybean Seed Sucrose Content using TILLING by Sequencing Analyses of The Soybean Sucrose Synthase Gene Family

in Functional and Applied Plant Genomics

Dounya Knizia
Erdem Anil
Yasser Salhi
Haiying Shi
Abdelhalim El Baze
My Abdelmajid Kassem
Naoufal Lakhssassi
Henry T. Nguyen
Khalid Meksem

Frontiers in Plant Science

doi 10.3389/fpls.2025.1606321

1,730 views

Original Research

Published on 25 Jun 2025

Identification of DNA N6-methyladenine modifications in the rice genome with a fine-tuned large language model

in Functional and Applied Plant Genomics

Yichi Zhang
Hao Chen
Shicheng Xiang
Zhibin Lv

Frontiers in Plant Science

doi 10.3389/fpls.2025.1626539

1,542 views
1 citation

Original Research

Published on 20 Jun 2025

Screening and identification of grain sorghum germplasm for salt tolerance at seedling stage

in Functional and Applied Plant Genomics

Yu Wang
Dongyang Li
Chunjuan Liu
Xiaolong Shi
Yan Huang
Chang Liu
Yufei Zhou

Frontiers in Plant Science

doi 10.3389/fpls.2025.1610685

1,706 views
3 citations

Data Report

Published on 20 Jun 2025

Whole genome sequencing of Neolamarckia macrophylla (Roxb.) Bosser and Neolamarckia cadamba (Roxb.) Bosser from Indonesia: a vital resource for completing chloroplast genomes and mining microsatellite markers

in Functional and Applied Plant Genomics

Fifi Gus Dwiyanti
Irsyad Kamal
Rahadian Pratama
Dhika Syaputra
Evayusvita Rustam
Ratna Uli Damayanti
Iskandar Z. Siregar
Dede J. Sudrajat

Frontiers in Plant Science

doi 10.3389/fpls.2025.1608577

1,760 views
1 citation

Original Research

Published on 19 Jun 2025

Genome-wide identification, transcriptional profiling, and miRNA-binding site analysis of the LBD gene family in the camphor tree

in Functional and Applied Plant Genomics

Jiaqi Zhang
Luyang Shan
Haoran Qi
Caihui Chen
Yongda Zhong
Meng Xu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1591736

1,443 views

Original Research

Published on 13 Jun 2025

Genome-wide identification and characterization of soybean GH9 endo-1,4-β-glucanases

in Functional and Applied Plant Genomics

Weimin Zhan
Huijuan Huang
Zaipan Cai
Zhenwei Zhao
Xuefu Lin
Yize Peng
Zhicheng Dong
Di Qin
Li Jiang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1597668

2,003 views
1 citation

622 articles

articles

Genome-wide identification, characterization, and expression analysis of the SOS1 gene family in the medicinal plant Paeonia ostii under salt stress

Association mapping and candidate gene identification for drought tolerance in sorghum

Correction: Mitochondrial genome assembly and comparative analysis of decaploid Camellia hainanica

GWAS analysis of Fusarium head blight resistance in a Nordic-Baltic spring wheat panel

Gene flow from weedy rice to T1c-19 transgenic rice stacked with cry1C*/bar genes and fitness of F1 hybrids

Conservation and valorization of Italian potato biodiversity through genotype-by-sequencing (GBS)

Identification of two new GRAS transcription factors and expression analysis of these genes in Chenopodium quinoa

Editorial: Omics applications in agriculture systems: unveiling functionality and practicality

Gh_FBL43 regulates the resistance of Gossypium hirsutum to Verticillium wilt through jasmonic acid and flavonoid-related pathways

Integrated transcriptome, GWAS, and metabolome revealed the mechanism of seed germination in sorghum

SaGP: identifying plant saline-alkali tolerance genes based on machine learning techniques

Editorial: Genomics-driven advances in crop productivity and stress resilience

Characterization of the complete chloroplast genome and comparative analysis of the phylogeny and codon usage bias of three Yunnan wild rice species

Unraveling yield heterosis in Chinese cabbage hybrid by comparative transcriptomic analysis and LHCB1 gene function analysis

Integrated morphophysiological, transcriptomic, and metabolomic data uncover the molecular mechanism of environmental adaptation of Zanthoxylum armatum with different latitudinal gradients

Mapping QTLs for Pyricularia leaf spot, nematode resistance, and yield related traits in pearl millet [Cenchrus americanus (L.) Morrone]

Mitochondrial genome assembly and comparative analysis of decaploid Camellia hainanica

Editorial: Genetic resources and conservation strategies for neotropical plant biodiversity

Improving Soybean Seed Sucrose Content using TILLING by Sequencing Analyses of The Soybean Sucrose Synthase Gene Family

Identification of DNA N6-methyladenine modifications in the rice genome with a fine-tuned large language model

Screening and identification of grain sorghum germplasm for salt tolerance at seedling stage

Whole genome sequencing of Neolamarckia macrophylla (Roxb.) Bosser and Neolamarckia cadamba (Roxb.) Bosser from Indonesia: a vital resource for completing chloroplast genomes and mining microsatellite markers

Genome-wide identification, transcriptional profiling, and miRNA-binding site analysis of the LBD gene family in the camphor tree

Genome-wide identification and characterization of soybean GH9 endo-1,4-β-glucanases