Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 10 Oct 2024

Combined transcriptome and metabolome analysis revealed the molecular mechanisms of fruit skin coloration in pink strawberry

in Functional and Applied Plant Genomics

Wenfei Xiao
Aichun Liu
Wenguo Lai
Jianrong Wang
Xiaoyuan Li
Yan Zha
Bo Zhao
Xiaoyang Chen
Hong Yu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1486892

1,069 views

Original Research

Published on 10 Oct 2024

Genome-wide analysis of WRKY gene family and the dynamic responses of key WRKY genes involved in cadmium stress in Brassica juncea

in Functional and Applied Plant Genomics

Shaocui Li
Qingqing Ji
Xia An
Changli Chen
Xiahong Luo
Tingting Liu
Lina Zou

Frontiers in Plant Science

doi 10.3389/fpls.2024.1465905

1,344 views

Original Research

Published on 07 Oct 2024

UV-induced reactive oxygen species and transcriptional control of 3-deoxyanthocyanidin biosynthesis in black sorghum pericarp

in Functional and Applied Plant Genomics

Brooklyn Schumaker
Lauren Mortensen
Robert R. Klein
Sabyasachi Mandal
Linda Dykes
Nicholas Gladman
William L. Rooney
Byron Burson
Patricia E. Klein

Frontiers in Plant Science

doi 10.3389/fpls.2024.1451215

1,196 views
1 citation

Original Research

Published on 03 Oct 2024

The OsGAPC3 mutation significantly affects grain quality traits and improves the nutritional quality of rice

in Functional and Applied Plant Genomics

Bo Peng
Yan Liu
Xiaoyu Sun
Qiang Zhao
Jing Qiu
Xiayu Tian
Jing Peng
Zhiguo Zhang
Yujian Wang
Yaqin Huang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1470316

769 views

Original Research

Published on 02 Oct 2024

Trait-customized sampling of core collections from a winter wheat genebank collection supports association studies

in Functional and Applied Plant Genomics

Marcel O. Berkner
Yong Jiang
Jochen C. Reif
Albert W. Schulthess

Frontiers in Plant Science

doi 10.3389/fpls.2024.1451749

829 views

Original Research

Published on 01 Oct 2024

A comprehensive multivariate approach for GxE interaction analysis in early maturing rice varieties

in Functional and Applied Plant Genomics

Muhammad Fuad Anshori
Yunus Musa
Muh Farid
Muh Jayadi
Rusnadi Padjung
Kaimuddin Kaimuddin
Yi Cheng Huang
Madonna Casimero
Iris Bogayong
Willy Bayuardi Suwarno

Frontiers in Plant Science

doi 10.3389/fpls.2024.1462981

1,289 views

Original Research

Published on 01 Oct 2024

Genome-wide association study reveals the genetic basis of rice resistance to three herbicides

in Functional and Applied Plant Genomics

Peizhou Xu
Yuhe Qin
Maosen Ma
Tengfei Liu
Fenhua Ruan
Le Xue
Jiying Cao
Guizong Xiao
Yun Chen
Hongyan Fu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1476829

903 views

Original Research

Accepted on 27 Sep 2024

Peanut Leaf Transcriptomic Dynamics Reveals Insights into the Acclimation Response to Elevated Carbon Dioxide under Semiarid Conditions

in Functional and Applied Plant Genomics

Haydee Laza
Bishwoyog Bhattharai
Venugopal Mendu
Mark Burow
Yves Emendack
Jacobo Sanchez
Aarti Gupta
Mostafa Abdelrahman
Lam-Son Phan Tran
David Tissue

Frontiers in Plant Science

doi 10.3389/fpls.2024.1407574

194 views

Original Research

Published on 27 Sep 2024

Identification of candidate genes and development of KASP markers for soybean shade-tolerance using GWAS

in Functional and Applied Plant Genomics

Qianru Jia
Shengyan Hu
Xihuan Li
Libin Wei
Qiong Wang
Wei Zhang
Hongmei Zhang
Xiaoqing Liu
Xin Chen
Xuejun Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1479536

1,079 views

Original Research

Published on 26 Sep 2024

Comprehensive transcriptome analysis of AP2/ERFs in Osmanthus fragrans reveals the role of OfERF017-mediated organic acid metabolism pathway in flower senescence

in Functional and Applied Plant Genomics

Jing-Jing Zou
Jun Zhang
Xiaoqian Wang
Hui Xia
Xiangling Zeng
Xuan Cai
Jie Yang
Jin Zeng
Zeqing Li
Guifu Zhang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1467232

911 views

Original Research

Published on 26 Sep 2024

Genome-wide identification and tissue expression pattern analysis of TPS gene family in soybean (Glycine max)

in Functional and Applied Plant Genomics

Huanli Li
Xiaoling Zhang
Qinli Yang
Xiaoxia Shangguan
Yanbin Ma

Frontiers in Plant Science

doi 10.3389/fpls.2024.1487092

958 views

Original Research

Published on 17 Sep 2024

Overexpression of the Liriodendron tulipifera TPS32 gene in tobacco enhances terpenoid compounds synthesis

in Functional and Applied Plant Genomics

Junpeng Wu
Manli Bu
Yaxian Zong
Zhonghua Tu
Yanli Cheng
Huogen Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1445103

1,073 views

Original Research

Published on 13 Sep 2024

Genome wide association study reveals new genes for resistance to striped stem borer in rice (Oryza sativa L.)

in Functional and Applied Plant Genomics

Xing Xiang
Shuhua Liu
Yuewen He
Deqiang Li
Andrews Danso Ofori
Abdul Ghani Kandhro
Tengda Zheng
Xiaoqun Yi
Ping Li
Fu Huang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1466857

945 views

Original Research

Published on 09 Sep 2024

Explainable artificial intelligence for genotype-to-phenotype prediction in plant breeding: a case study with a dataset from an almond germplasm collection

in Functional and Applied Plant Genomics

Pierfrancesco Novielli
Donato Romano
Stefano Pavan
Pasquale Losciale
Anna Maria Stellacci
Domenico Diacono
Roberto Bellotti
Sabina Tangaro

Frontiers in Plant Science

doi 10.3389/fpls.2024.1434229

2,023 views
2 citations

Original Research

Published on 09 Sep 2024

Genomic prediction of yield-related traits and genome-based establishment of heterotic pattern in maize hybrid breeding of Southwest China

in Functional and Applied Plant Genomics

Yong Xiang
Chao Xia
Lujiang Li
Rujun Wei
Tingzhao Rong
Hailan Liu
Hai Lan

Frontiers in Plant Science

doi 10.3389/fpls.2024.1441555

2,340 views
1 citation

Original Research

Published on 05 Sep 2024

Genome assembly of Stephania longa provides insight into cepharanthine biosynthesis

in Functional and Applied Plant Genomics

Huiying Shang
Yuan Lu
Lulu Xun
Kun Wang
Bin Li
Yuxuan Liu
Tao Ma

Frontiers in Plant Science

doi 10.3389/fpls.2024.1414636

966 views

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Articles

Combined transcriptome and metabolome analysis revealed the molecular mechanisms of fruit skin coloration in pink strawberry

Genome-wide analysis of WRKY gene family and the dynamic responses of key WRKY genes involved in cadmium stress in Brassica juncea

UV-induced reactive oxygen species and transcriptional control of 3-deoxyanthocyanidin biosynthesis in black sorghum pericarp

The OsGAPC3 mutation significantly affects grain quality traits and improves the nutritional quality of rice

Trait-customized sampling of core collections from a winter wheat genebank collection supports association studies

A comprehensive multivariate approach for GxE interaction analysis in early maturing rice varieties

Genome-wide association study reveals the genetic basis of rice resistance to three herbicides

Peanut Leaf Transcriptomic Dynamics Reveals Insights into the Acclimation Response to Elevated Carbon Dioxide under Semiarid Conditions

Identification of candidate genes and development of KASP markers for soybean shade-tolerance using GWAS

Comprehensive transcriptome analysis of AP2/ERFs in Osmanthus fragrans reveals the role of OfERF017-mediated organic acid metabolism pathway in flower senescence

Genome-wide identification and tissue expression pattern analysis of TPS gene family in soybean (Glycine max)

Overexpression of the Liriodendron tulipifera TPS32 gene in tobacco enhances terpenoid compounds synthesis

Genome wide association study reveals new genes for resistance to striped stem borer in rice (Oryza sativa L.)

Explainable artificial intelligence for genotype-to-phenotype prediction in plant breeding: a case study with a dataset from an almond germplasm collection

Genomic prediction of yield-related traits and genome-based establishment of heterotic pattern in maize hybrid breeding of Southwest China

Genome assembly of Stephania longa provides insight into cepharanthine biosynthesis