Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 20 Aug 2025

Identification and expression analysis of the BnE2F/DP gene family in Brassica napus

in Functional and Applied Plant Genomics

Min Shen
Lijuan Wei
Chun Fu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1641897

1,785 views

Original Research

Published on 20 Aug 2025

Receptor-like kinase SlRLK-like positively regulates sugar accumulation and fruit ripening in tomato

in Functional and Applied Plant Genomics

Jiaqi Sun
Xinsheng Zhang
Miaofei Yang
Xin Liu
Jing Jiang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1649082

2,110 views
1 citation

Original Research

Published on 19 Aug 2025

Multi-trait ridge regression BLUP with de novo GWAS improves genomic prediction for haploid induction ability of haploid inducers in maize

in Functional and Applied Plant Genomics

Yu-Ru Chen
Ursula K. Frei
Thomas Lübberstedt

Frontiers in Plant Science

doi 10.3389/fpls.2025.1614457

2,303 views
1 citation

Original Research

Published on 18 Aug 2025

Comparative analysis of complete chloroplast genomes of Flemingia prostrata and Flemingia macrophylla, two commonly used medicinal plants in southern China

in Functional and Applied Plant Genomics

Fan Wei
Yang Lin
Danfeng Tang
Ying Liang
Shuangshuang Qin

Frontiers in Plant Science

doi 10.3389/fpls.2025.1591427

1,697 views

Original Research

Published on 14 Aug 2025

Metagenomic analysis of the effects of plant- and yeast-based formulations on the grapevine leaf microbiome of cv. ‘Touriga Franca’

in Functional and Applied Plant Genomics

Eliana Monteiro
Paula Baptista
Sofia Silva
Márcia Carvalho
Radek Bragança
Kieran J. Guinan
Neerakkal Sujeeth
Isabel Cortez
Berta Gonçalves
Isaura Castro

Frontiers in Plant Science

doi 10.3389/fpls.2025.1637143

1,792 views

Original Research

Published on 06 Aug 2025

Genome-wide identification and functional characterization of oleosin genes in peanut (Arachis hypogaea L.)

in Functional and Applied Plant Genomics

Meiling Hu
Jie Wu
Xiaomeng Xue
Li Huang
Nian Liu
Liying Yan
Yuning Chen
Xin Wang
Yanping Kang
Zhihui Wang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1623513

2,227 views

Review

Published on 05 Aug 2025

Beyond the genome: the role of functional markers in contemporary plant breeding

in Functional and Applied Plant Genomics

Tae-Chun Park
Pransiskudura Chamara Silva
Thomas Lübberstedt
M. Paul Scott

Frontiers in Plant Science

doi 10.3389/fpls.2025.1637299

4,292 views
2 citations

Original Research

Published on 30 Jul 2025

Genome-wide identification, characterization, and expression analysis of the SOS1 gene family in the medicinal plant Paeonia ostii under salt stress

in Functional and Applied Plant Genomics

Yahong Chen
Huabing Liang
Zhanchang Wang
Quaid Hussain
Xuexiong Zhang
Fazhi Chen
Xiaohua Wang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1614011

2,848 views
1 citation

Original Research

Published on 25 Jul 2025

Association mapping and candidate gene identification for drought tolerance in sorghum

in Functional and Applied Plant Genomics

Huiting Min
Kang Wang
Tiantian Wang
Xinxiu Cheng
Ephrem Habyarimana
Yongfei Wang
Die Hu
Yi-Hong Wang
Lihua Wang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1629615

3,842 views
2 citations

Correction

Published on 23 Jul 2025

Correction: Mitochondrial genome assembly and comparative analysis of decaploid Camellia hainanica

in Functional and Applied Plant Genomics

Shihui Zhang
Yuyan Zhang
Sheng Luo
Jie Gao
Haiyan Hu
Jinping Liu
Wenqiang Wu
Jian Wang
Xiaolong Huang
Hanggui Lai

Frontiers in Plant Science

doi 10.3389/fpls.2025.1658310

972 views

Original Research

Published on 23 Jul 2025

GWAS analysis of Fusarium head blight resistance in a Nordic-Baltic spring wheat panel

in Functional and Applied Plant Genomics

Shayan Syed
Andrius Aleliūnas
Rita Armonienė
Gintaras Brazauskas
Andrii Gorash

Frontiers in Plant Science

doi 10.3389/fpls.2025.1604296

2,826 views
1 citation

Original Research

Published on 22 Jul 2025

Gene flow from weedy rice to T1c-19 transgenic rice stacked with cry1C*/bar genes and fitness of F1 hybrids

in Functional and Applied Plant Genomics

Guang-Le Xie
Jia-Qi Shen
Min Wang
Ji-Kun Li
Yao Huang
Sheng Qiang
Xiao-Ling Song
Wei-Min Dai

Frontiers in Plant Science

doi 10.3389/fpls.2025.1513367

1,917 views
1 citation

Original Research

Published on 21 Jul 2025

Conservation and valorization of Italian potato biodiversity through genotype-by-sequencing (GBS)

in Functional and Applied Plant Genomics

M. Martina
R. Natale
E. Vergnano
A. M. Milani
S. Biricolti
L. Andrenelli
E. Portis

Frontiers in Plant Science

doi 10.3389/fpls.2025.1629306

2,296 views

Editorial

Published on 18 Jul 2025

Editorial: Omics applications in agriculture systems: unveiling functionality and practicality

in Functional and Applied Plant Genomics

Dinesh Adhikary
Joann Mudge
Thiruvarangan Ramaraj

Frontiers in Plant Science

doi 10.3389/fpls.2025.1642175

1,791 views

Original Research

Published on 18 Jul 2025

Identification of two new GRAS transcription factors and expression analysis of these genes in Chenopodium quinoa

in Functional and Applied Plant Genomics

Xinwen Hou
Shuwei Wang
Shanmin Zhou
Weizhong Liu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1579338

2,125 views

Original Research

Published on 17 Jul 2025

Gh_FBL43 regulates the resistance of Gossypium hirsutum to Verticillium wilt through jasmonic acid and flavonoid-related pathways

in Functional and Applied Plant Genomics

Jieyin Zhao
Xuening Su
Wenju Gao
Tingwei Wang
Yuxiang Wang
Quanjia Chen
Yanying Qu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1620947

2,280 views
1 citation

Original Research

Published on 17 Jul 2025

Integrated transcriptome, GWAS, and metabolome revealed the mechanism of seed germination in sorghum

in Functional and Applied Plant Genomics

Lan Ju
Ruizhen Liu
Xiaoqiang Cheng
Yao Wang
Xin Lv
Jianqiang Chu
Hao Niu
Haisheng Yan
Yubin Wang
Fangfang Fan

Frontiers in Plant Science

doi 10.3389/fpls.2025.1601899

3,128 views
3 citations

Original Research

Published on 16 Jul 2025

SaGP: identifying plant saline-alkali tolerance genes based on machine learning techniques

in Functional and Applied Plant Genomics

Baixue Qiao
Wentao Gao
Xudong Zhang
Min Du
Shuda Wang
Xuanrui Liu
Shaozi Pang
Chunxue Yang
Jiang Wang
Yuming Zhao

Frontiers in Plant Science

doi 10.3389/fpls.2025.1629794

2,245 views
1 citation

Editorial

Published on 11 Jul 2025

Editorial: Genomics-driven advances in crop productivity and stress resilience

in Functional and Applied Plant Genomics

Parimalan Rangan
Robert Henry
Ambika Baldev Gaikwad

Frontiers in Plant Science

doi 10.3389/fpls.2025.1645714

2,203 views

Original Research

Published on 02 Jul 2025

Characterization of the complete chloroplast genome and comparative analysis of the phylogeny and codon usage bias of three Yunnan wild rice species

in Functional and Applied Plant Genomics

Rongxin Li
Bo Wang
Suqin Xiao
Ling Chen
Fuyou Yin
Jinlu Li
Cong Jiang
Dunyu Zhang
Qiaofang Zhong
Yun Zhang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1555104

2,131 views

Original Research

Published on 02 Jul 2025

Unraveling yield heterosis in Chinese cabbage hybrid by comparative transcriptomic analysis and LHCB1 gene function analysis

in Functional and Applied Plant Genomics

Ruihua Wang
Min Han
Taili Han
Ligong Xu
Yuanyuan Li

Frontiers in Plant Science

doi 10.3389/fpls.2025.1627259

1,771 views
1 citation

Original Research

Published on 01 Jul 2025

Integrated morphophysiological, transcriptomic, and metabolomic data uncover the molecular mechanism of environmental adaptation of Zanthoxylum armatum with different latitudinal gradients

in Functional and Applied Plant Genomics

Yuan Guo
Xueqian Fu
Chong Sun
Yifei Deng
Han Liu
Long Tong
Mi Kuang
Ning Tang
Wenying Yang
Xia Liu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1622956

2,018 views
2 citations

Original Research

Published on 30 Jun 2025

Mapping QTLs for Pyricularia leaf spot, nematode resistance, and yield related traits in pearl millet [Cenchrus americanus (L.) Morrone]

in Functional and Applied Plant Genomics

Sairam Vutla
Joseph E. Knoll
Anvesh Sankuratri
Risha G. Nayak
Limei Liu
Peng W. Chee
Raghupathy Karthikeyan
Bashasab Fakrudin
Mahendar Thudi
Patricia Timper

Frontiers in Plant Science

doi 10.3389/fpls.2025.1588485

2,409 views

Original Research

Published on 30 Jun 2025

Mitochondrial genome assembly and comparative analysis of decaploid Camellia hainanica

in Functional and Applied Plant Genomics

Shihui Zhang
Yuyan Zhang
Sheng Luo
Jie Gao
Haiyan Hu
Jinping Liu
Wenqiang Wu
Jian Wang
Xiaolong Huang
Hanggui Lai

Frontiers in Plant Science

doi 10.3389/fpls.2025.1556379

2,376 views
3 citations

653 articles

articles

Identification and expression analysis of the BnE2F/DP gene family in Brassica napus

Receptor-like kinase SlRLK-like positively regulates sugar accumulation and fruit ripening in tomato

Multi-trait ridge regression BLUP with de novo GWAS improves genomic prediction for haploid induction ability of haploid inducers in maize

Comparative analysis of complete chloroplast genomes of Flemingia prostrata and Flemingia macrophylla, two commonly used medicinal plants in southern China

Metagenomic analysis of the effects of plant- and yeast-based formulations on the grapevine leaf microbiome of cv. ‘Touriga Franca’

Genome-wide identification and functional characterization of oleosin genes in peanut (Arachis hypogaea L.)

Beyond the genome: the role of functional markers in contemporary plant breeding

Genome-wide identification, characterization, and expression analysis of the SOS1 gene family in the medicinal plant Paeonia ostii under salt stress

Association mapping and candidate gene identification for drought tolerance in sorghum

Correction: Mitochondrial genome assembly and comparative analysis of decaploid Camellia hainanica

GWAS analysis of Fusarium head blight resistance in a Nordic-Baltic spring wheat panel

Gene flow from weedy rice to T1c-19 transgenic rice stacked with cry1C*/bar genes and fitness of F1 hybrids

Conservation and valorization of Italian potato biodiversity through genotype-by-sequencing (GBS)

Editorial: Omics applications in agriculture systems: unveiling functionality and practicality

Identification of two new GRAS transcription factors and expression analysis of these genes in Chenopodium quinoa

Gh_FBL43 regulates the resistance of Gossypium hirsutum to Verticillium wilt through jasmonic acid and flavonoid-related pathways

Integrated transcriptome, GWAS, and metabolome revealed the mechanism of seed germination in sorghum

SaGP: identifying plant saline-alkali tolerance genes based on machine learning techniques

Editorial: Genomics-driven advances in crop productivity and stress resilience

Characterization of the complete chloroplast genome and comparative analysis of the phylogeny and codon usage bias of three Yunnan wild rice species

Unraveling yield heterosis in Chinese cabbage hybrid by comparative transcriptomic analysis and LHCB1 gene function analysis

Integrated morphophysiological, transcriptomic, and metabolomic data uncover the molecular mechanism of environmental adaptation of Zanthoxylum armatum with different latitudinal gradients

Mapping QTLs for Pyricularia leaf spot, nematode resistance, and yield related traits in pearl millet [Cenchrus americanus (L.) Morrone]

Mitochondrial genome assembly and comparative analysis of decaploid Camellia hainanica