Frontiers in Plant Science | Plant Bioinformatics

Original Research

Published on 13 Aug 2024

Full-length RNA sequencing and single-nucleus sequencing deciphers programmed cell death and developmental trajectories in laticiferous canals of Decaisnea insignis fruits

in Plant Bioinformatics

Gen Li
Qian Zhao
Xinwei Shi
Bin Li
Luyao Yang
Yanwen Wang
Yafu Zhou

Frontiers in Plant Science

doi 10.3389/fpls.2024.1446561

2,670 views
1 citation

Original Research

Published on 09 Aug 2024

Complete mitochondrial genome assembly of Zizania latifolia and comparative genome analysis

in Plant Bioinformatics

Xianyang Luo
Cuicui Gu
Sijia Gao
Man Li
Haixiang Zhang
Shidong Zhu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1381089

3,059 views
6 citations

Original Research

Published on 07 Aug 2024

Complete mitochondrial genome of Hippophae tibetana: insights into adaptation to high-altitude environments

in Plant Bioinformatics

Zhefei Zeng
Zhengyan Zhang
Norzin Tso
Shutong Zhang
Yan Chen
Qi Shu
Junru Li
Ziyi Liang
Ruoqiu Wang
Junwei Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1449606

3,210 views
13 citations

Correction

Published on 07 Aug 2024

Corrigendum: Development of mini-barcode based on chloroplast genome and its application in metabarcoding molecular identification of Chinese medicinal material Radix Paeoniae Rubra (Chishao)

in Plant Bioinformatics

Xia Yang
Xiaolei Yu
Xiaoying Zhang
Hua Guo
Zhimei Xing
Liuwei Xu
Jia Wang
Yuyan Shen
Jie Yu
Pengfei Lv

Frontiers in Plant Science

doi 10.3389/fpls.2024.1463138

1,329 views

Review

Published on 06 Aug 2024

Voice from both sides: a molecular dialogue between transcriptional activators and repressors in seed-to-seedling transition and crop adaptation

in Plant Bioinformatics

Dongeun Go
Bailan Lu
Milad Alizadeh
Sonia Gazzarrini
Liang Song

Frontiers in Plant Science

doi 10.3389/fpls.2024.1416216

3,865 views
4 citations

Original Research

Published on 01 Aug 2024

Uncovering novel genes for drought stress in rice at germination stage using genome wide association study

in Plant Bioinformatics

Mvuyeni Nyasulu
Qi Zhong
Xiansheng Li
Xu Liu
Zhengjie Wang
Liang Chen
Haohua He
Jianmin Bian

Frontiers in Plant Science

doi 10.3389/fpls.2024.1421267

4,201 views
7 citations

Original Research

Published on 31 Jul 2024

Successful development of molecular diagnostic technology combining mini-barcoding and high-resolution melting for traditional Chinese medicine agarwood species based on single-nucleotide polymorphism in the chloroplast genome

in Plant Bioinformatics

Jian Feng
Yangyang Liu
Anzhen Xie
Yun Yang
Feifei Lv
Jianhe Wei

Frontiers in Plant Science

doi 10.3389/fpls.2024.1405168

2,745 views
3 citations

Original Research

Published on 31 Jul 2024

Organ-specific transcriptional regulation by HFR1 and HY5 in response to shade in Arabidopsis

in Plant Bioinformatics

Ian Kin Yuen Choi
Amit Kumar Chaturvedi
Benny Jian Rong Sng
Kien Van Vu
In-Cheol Jang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1430639

4,475 views
4 citations

Original Research

Published on 30 Jul 2024

Genome-wide identification and expression analysis of the U-box E3 ubiquitin ligase gene family related to bacterial wilt resistance in tobacco (Nicotiana tabacum L.) and eggplant (Solanum melongena L.)

in Plant Bioinformatics

Rui Chen
Gang Gu
Binghui Zhang
Chaofan Du
Xiaolu Lin
Weiwei Cai
Yan Zheng
Tong Li
Ruiqi Wang
Xiaofang Xie

Frontiers in Plant Science

doi 10.3389/fpls.2024.1425651

3,318 views
1 citation

Methods

Published on 26 Jul 2024

Deep learning-based elaiosome detection in milk thistle seed for efficient high-throughput phenotyping

in Plant Bioinformatics

Younguk Kim
Alebel Mekuriaw Abebe
Jaeyoung Kim
Suyoung Hong
Kwanghoon An
Jeehyoung Shim
Jeongho Baek

Frontiers in Plant Science

doi 10.3389/fpls.2024.1395558

2,218 views
1 citation

Original Research

Published on 23 Jul 2024

The impact of retrotransposons on castor bean genomes

in Plant Bioinformatics

Lin Kong
Tingting Zhang
Lei Ma

Frontiers in Plant Science

doi 10.3389/fpls.2024.1397215

3,031 views

Original Research

Published on 22 Jul 2024

Analyzing the defense response mechanism of Atractylodes macrocephala to Fusarium oxysporum through small RNA and degradome sequencing

in Plant Bioinformatics

Sen Fan
Yunjia Tang
Na Zhu
Qingling Meng
Yanguang Zhou
Yujin Zhao
Jingyan Xu
Chenxian Gu
Shijie Dai
Bo Zhu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1415209

2,583 views
1 citation

Review

Published on 18 Jul 2024

Understanding grain development in the Poaceae family by comparing conserved and distinctive pathways through omics studies in wheat and maize

in Plant Bioinformatics

Yuanyuan Ji
Thulani Hewavithana
Andrew G. Sharpe
Lingling Jin

Frontiers in Plant Science

doi 10.3389/fpls.2024.1393140

4,091 views
5 citations

Original Research

Published on 17 Jul 2024

Formation mechanism and regulation analysis of trumpet leaf in Ginkgo biloba L

in Plant Bioinformatics

Xin-hui Li
Xiao-jing Kang
Xin-yue Zhang
Li-ning Su
Xing Bi
Rui-long Wang
Shi-yan Xing
Li-min Sun

Frontiers in Plant Science

doi 10.3389/fpls.2024.1367121

2,822 views
3 citations

Opinion

Published on 11 Jul 2024

Seeing in the dark: a metagenomic approach can illuminate the drivers of plant disease

in Plant Bioinformatics

Veronica Roman-Reyna
Sharifa G. Crandall

Frontiers in Plant Science

doi 10.3389/fpls.2024.1405042

6,179 views
8 citations

Original Research

Published on 08 Jul 2024

Genome-wide identification of the CAD gene family and functional analysis of putative bona fide CAD genes in tobacco (Nicotiana tabacum L.)

in Plant Bioinformatics

Mingzhu Wu
Yijun Li
Zhengtai Liu
Lin Xia
Yiyu Xiang
Lijie Zhao
Xiaobei Yang
Zefeng Li
Xiaodong Xie
Lin Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1400213

4,331 views
11 citations

Original Research

Published on 27 Jun 2024

Genome-wide identification, characterization, and evolutionary analysis of the barley TALE gene family and its expression profiles in response to exogenous hormones

in Plant Bioinformatics

Tian-jiang Liao
Tao Huang
Hui-yan Xiong
Jie-cuo Duo
Jian-zhi Ma
Ming-yang Du
Rui-jun Duan

Frontiers in Plant Science

doi 10.3389/fpls.2024.1421702

2,984 views
5 citations

Original Research

Published on 26 Jun 2024

Characterization of the SWI/SNF complex and nucleosome organization in sorghum

in Plant Bioinformatics

Xiaofei Chen
Chao He
Huan Xu
Gongjian Zeng
Quanjun Huang
Zhuying Deng
Xiner Qin
Xiangling Shen
Yongfeng Hu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1430467

3,522 views
1 citation

Original Research

Published on 11 Jun 2024

Comparative transcriptome analysis reveals the potential mechanism of GA3-induced dormancy release in Suaeda glauca black seeds

in Plant Bioinformatics

Hongfei Wang
Tianjiao Xu
Yongjia Li
Rui Gao
Xuelin Tao
Jieqiong Song
Changping Li
Qiuli Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1354141

3,454 views
8 citations

Original Research

Published on 05 Jun 2024

A systems genomics and genetics approach to identify the genetic regulatory network for lignin content in Brassica napus seeds

in Plant Bioinformatics

Wentao Zhang
Erin E. Higgins
Stephen J. Robinson
Wayne E. Clarke
Kerry Boyle
Andrew G. Sharpe
Pierre R. Fobert
Isobel A. P. Parkin

Frontiers in Plant Science

doi 10.3389/fpls.2024.1393621

2,918 views

Correction

Published on 05 Jun 2024

Corrigendum: LocoGSE, a sequence-based genome size estimator for plants

in Plant Bioinformatics

Pierre Guenzi-Tiberi
Benjamin Istace
Inger Greve Alsos
The PhyloNorway Consortium
Eric Coissac
Sébastien Lavergne
The PhyloAlps Consortium
Jean-Marc Aury
France Denoeud

Frontiers in Plant Science

doi 10.3389/fpls.2024.1426035

1,197 views

Original Research

Published on 28 May 2024

Identification and expression profiling of SmGATA genes family involved in response to light and phytohormones in eggplant

in Plant Bioinformatics

Yanyan Wang
Xinyun Li
Yunrong Mo
Caiqian Jiang
Ying Zhou
Jingyi Hu
Youling Zhang
Junheng Lv
Kai Zhao
Zhenya Lu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1415921

2,029 views
4 citations

Original Research

Published on 28 May 2024

Genome-wide identification of bZIP transcription factors and their expression analysis in Platycodon grandiflorus under abiotic stress

in Plant Bioinformatics

Zhen Wang
Panpan Wang
Huiyan Cao
Meiqi Liu
Lingyang Kong
Honggang Wang
Weichao Ren
Qifeng Fu
Wei Ma

Frontiers in Plant Science

doi 10.3389/fpls.2024.1403220

4,814 views
7 citations

Original Research

Published on 21 May 2024

Metabolic and molecular mechanisms of spine color formation in Chinese red chestnut

in Plant Bioinformatics

Qian Qiao
Yun Gao
Qingzhong Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1377899

2,672 views

798 articles

articles

Full-length RNA sequencing and single-nucleus sequencing deciphers programmed cell death and developmental trajectories in laticiferous canals of Decaisnea insignis fruits

Complete mitochondrial genome assembly of Zizania latifolia and comparative genome analysis

Complete mitochondrial genome of Hippophae tibetana: insights into adaptation to high-altitude environments

Corrigendum: Development of mini-barcode based on chloroplast genome and its application in metabarcoding molecular identification of Chinese medicinal material Radix Paeoniae Rubra (Chishao)

Voice from both sides: a molecular dialogue between transcriptional activators and repressors in seed-to-seedling transition and crop adaptation

Uncovering novel genes for drought stress in rice at germination stage using genome wide association study

Successful development of molecular diagnostic technology combining mini-barcoding and high-resolution melting for traditional Chinese medicine agarwood species based on single-nucleotide polymorphism in the chloroplast genome

Organ-specific transcriptional regulation by HFR1 and HY5 in response to shade in Arabidopsis

Genome-wide identification and expression analysis of the U-box E3 ubiquitin ligase gene family related to bacterial wilt resistance in tobacco (Nicotiana tabacum L.) and eggplant (Solanum melongena L.)

Deep learning-based elaiosome detection in milk thistle seed for efficient high-throughput phenotyping

The impact of retrotransposons on castor bean genomes

Analyzing the defense response mechanism of Atractylodes macrocephala to Fusarium oxysporum through small RNA and degradome sequencing

Understanding grain development in the Poaceae family by comparing conserved and distinctive pathways through omics studies in wheat and maize

Formation mechanism and regulation analysis of trumpet leaf in Ginkgo biloba L

Seeing in the dark: a metagenomic approach can illuminate the drivers of plant disease

Genome-wide identification of the CAD gene family and functional analysis of putative bona fide CAD genes in tobacco (Nicotiana tabacum L.)

Genome-wide identification, characterization, and evolutionary analysis of the barley TALE gene family and its expression profiles in response to exogenous hormones

Characterization of the SWI/SNF complex and nucleosome organization in sorghum

Comparative transcriptome analysis reveals the potential mechanism of GA3-induced dormancy release in Suaeda glauca black seeds

A systems genomics and genetics approach to identify the genetic regulatory network for lignin content in Brassica napus seeds

Corrigendum: LocoGSE, a sequence-based genome size estimator for plants

Identification and expression profiling of SmGATA genes family involved in response to light and phytohormones in eggplant

Genome-wide identification of bZIP transcription factors and their expression analysis in Platycodon grandiflorus under abiotic stress

Metabolic and molecular mechanisms of spine color formation in Chinese red chestnut