Frontiers in Plant Science | Plant Bioinformatics

Editorial

Published on 10 Mar 2025

Editorial: Precision exploration of plant germplasm resources: breakthroughs and applications in telomere-to-telomere (T2T) genomics

in Plant Bioinformatics

Longxin Wang
Kai-Hua Jia

Frontiers in Plant Science

doi 10.3389/fpls.2025.1573144

1,573 views

Original Research

Published on 07 Mar 2025

Variation analysis and comparison of leaf and fruit traits of triploid hybrid progeny in jujube

in Plant Bioinformatics

Jiayuan Xuan
Quanhui Ma
Lixin Ge
Fenfen Yan
Jun Yu
Jiurui Wang
Cuiyun Wu
Mengjun Liu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1553316

2,177 views
1 citation

Original Research

Published on 27 Feb 2025

Comprehensive analysis of the mitochondrial genome of Iris domestica emphasizing multichromosomal organization and repeat-mediated homologous recombination

in Plant Bioinformatics

Lizhi Ouyang
Xinyu Li
Ruili Wang
Yixuan Chen
Shuo Wang
Jianfang Wang
Yelin Tian

Frontiers in Plant Science

doi 10.3389/fpls.2024.1520033

2,398 views
1 citation

Original Research

Published on 20 Feb 2025

Rapid and accurate detection of peanut pod appearance quality based on lightweight and improved YOLOv5_SSE model

in Plant Bioinformatics

Zhixia Liu
Xilin Zhong
Chunyu Wang
Guozhen Wu
Fengyu He
Jing Wang
Dexu Yang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1494688

1,720 views
1 citation

Editorial

Published on 20 Feb 2025

Editorial: Omics in seed development: challenges and opportunities for improving of seed quality and yield in model and crop plants

in Plant Bioinformatics

Changye Yang
Zhaorong Hu
Raju Datla
Daoquan Xiang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1568039

1,850 views
1 citation

Original Research

Published on 18 Feb 2025

Dynamic changes in the transcriptome of tropical region-originated king grasses in response to cold stress

in Plant Bioinformatics

Xianjun Lai
Junfeng Yan
Zihan Chen
Yizheng Zhang
Fan Luo
Guangze Cai
Lang Yan

Frontiers in Plant Science

doi 10.3389/fpls.2025.1511466

1,780 views
1 citation

Original Research

Published on 18 Feb 2025

New insights into the transcription factor regulatory networks driving peel coloration under hormone induction analyzed by transcriptomics and metabolomics in tangor ‘Murcot’

in Plant Bioinformatics

Yang Chen
Lei Yang
Shuang Li
Min Wang
Jianjun Yu
Wenqin Bai
Lin Hong

Frontiers in Plant Science

doi 10.3389/fpls.2025.1526733

1,799 views
1 citation

Methods

Published on 17 Feb 2025

Applications of synchrotron light in seed research: an array of x-ray and infrared imaging methodologies

in Plant Bioinformatics

Paula Ashe
Kaiyang Tu
Jarvis A. Stobbs
James J. Dynes
Miranda Vu
Hamid Shaterian
Sateesh Kagale
Karen K. Tanino
Janitha P. D. Wanasundara
Sally Vail

Frontiers in Plant Science

doi 10.3389/fpls.2024.1395952

4,506 views
8 citations

Original Research

Published on 13 Feb 2025

Rapid and accurate classification of mung bean seeds based on HPMobileNet

in Plant Bioinformatics

Shaozhong Song
Zhenyang Chen
Helong Yu
Mingxuan Xue
Junling Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1474906

2,813 views
2 citations

Original Research

Published on 12 Feb 2025

Identification of maize kernel varieties based on interpretable ensemble algorithms

in Plant Bioinformatics

Chunguang Bi
Xinhua Bi
Jinjing Liu
Hao Xie
Shuo Zhang
He Chen
Mohan Wang
Lei Shi
Shaozhong Song

Frontiers in Plant Science

doi 10.3389/fpls.2025.1511097

2,260 views
4 citations

Mini Review

Published on 11 Feb 2025

Pulse protein quality and derived bioactive peptides

in Plant Bioinformatics

Matthew G. Nosworthy
Bianyun Yu
L. Irina Zaharia
Gerardo Medina
Nii Patterson

Frontiers in Plant Science

doi 10.3389/fpls.2025.1429225

3,566 views
2 citations

Original Research

Published on 11 Feb 2025

Pan-genome analysis and expression verification of the maize ARF gene family

in Plant Bioinformatics

Quan-cai Man
Yan-qun Wang
Shun-juan Gao
Zhi-chang Gao
Zheng-ping Peng
Jiang-hui Cui

Frontiers in Plant Science

doi 10.3389/fpls.2024.1506853

4,495 views
5 citations

Original Research

Published on 07 Feb 2025

Comprehensive transcriptome and proteome analysis revealed the molecular mechanisms of melatonin priming and waterlogging response in peach

in Plant Bioinformatics

Xianbin Gu
Linghong Lu
Jing Gao
Fei Fan
Genhua Song
Huiqin Zhang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1527382

2,192 views
1 citation

Original Research

Published on 07 Feb 2025

A gene expression atlas of Nicotiana tabacum across various tissues at transcript resolution

in Plant Bioinformatics

Shizhou Yu
Jufen Wan
Tenghang Xu
Jie Zhang
Linggai Cao
Jie Liu
Hongfeng Liu
Xueliang Ren
Zhixiao Yang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1500654

2,844 views
1 citation

Original Research

Published on 03 Feb 2025

Integrative analysis of metabolite and transcriptome reveals the biosynthetic pathway and candidate genes for iridoid glycoside biosynthesis in Neopicrorhiza scrophulariiflora (Pennell) D.Y.Hong

in Plant Bioinformatics

Ke Rao
Siyu Liu
Xiaohui Tang
Guofu Jia
Shaohua Yang
Chaoxiang Ren
Jin Pei

Frontiers in Plant Science

doi 10.3389/fpls.2025.1527477

2,372 views
2 citations

Original Research

Published on 29 Jan 2025

Deep R-gene discovery in HLB resistant wild Australian limes uncovers evolutionary features and potentially important loci for hybrid breeding

in Plant Bioinformatics

Jianyang Liu
Khushwant Singh
Matthew Huff
Christopher Gottschalk
Michael Do
Margaret Staton
Manjunath L. Keremane
Robert Krueger
Chandrika Ramadugu
Chris Dardick

Frontiers in Plant Science

doi 10.3389/fpls.2024.1503030

2,750 views
5 citations

Original Research

Published on 29 Jan 2025

In silico characterisation of the avocado WAK/WAKL gene family with a focus on genes involved in defence against Phytophthora cinnamomi

in Plant Bioinformatics

Aaron Harvey
Noëlani van den Berg
Velushka Swart

Frontiers in Plant Science

doi 10.3389/fpls.2024.1474781

2,084 views
1 citation

Original Research

Published on 23 Jan 2025

Transcriptomic and metabolomic analyses reveal the mechanism of color difference between two kinds of Cistanche deserticola before and after drying

in Plant Bioinformatics

Tiantian Zhu
Jing Zhang
Tianle Liu
Shuai Zhang
Baimei Yang
Li Xu
Lei Zhao
Mengfei Li
Ling Jin

Frontiers in Plant Science

doi 10.3389/fpls.2024.1506523

2,233 views
1 citation

Original Research

Published on 21 Jan 2025

Genome-wide identification and expression analysis of bHLH gene family revealed their potential roles in abiotic stress response, anthocyanin biosynthesis and trichome formation in Glycyrrhiza uralensis

in Plant Bioinformatics

Guohua Ding
Yanping Shi
Kerui Xie
Hongbin Li
Guanghui Xiao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1485757

3,365 views
2 citations

Original Research

Published on 21 Jan 2025

Chrysanthemum classification method integrating deep visual features from both the front and back sides

in Plant Bioinformatics

Yifan Chen
Xichen Yang
Hui Yan
Jia Liu
Jian Jiang
Zhongyuan Mao
Tianshu Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1463113

1,989 views
3 citations

Original Research

Published on 21 Jan 2025

Integrated metabolome and transcriptome analysis reveals potential mechanism during the bud dormancy transition of Astragalus membranaceus (Fisch.) Bge. var. mongholicus (Bge.) Hsiao

in Plant Bioinformatics

Huan Guan
Yuhuan Zhao
Qing Chen
Qianqian Zhang
Pengpeng Yang
Shuying Sun
Guilin Chen

Frontiers in Plant Science

doi 10.3389/fpls.2024.1483538

2,328 views

Original Research

Published on 20 Jan 2025

Features and evolutionary adaptations of the mitochondrial genome of Garuga forrestii W. W. Sm

in Plant Bioinformatics

Rong Chen
Rui Rao
Chun Wang
Dongbo Zhu
Fen Yuan
Liangliang Yue

Frontiers in Plant Science

doi 10.3389/fpls.2024.1509669

2,303 views
1 citation

Original Research

Published on 20 Jan 2025

Rapid and non-destructive classification of rice seeds with different flavors: an approach based on HPFasterNet

in Plant Bioinformatics

Helong Yu
Zhenyang Chen
Shaozhong Song
Chunyan Qi
Junling Liu
Chenglin Yang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1502631

1,630 views
6 citations

Original Research

Published on 17 Jan 2025

Research on the quantification and automatic classification method of Chinese cabbage plant type based on point cloud data and PointNet++

in Plant Bioinformatics

Chongchong Yang
Lei Sun
Jun Zhang
Xiaofei Fan
Dongfang Zhang
Tianyi Ren
Minggeng Liu
Zhiming Zhang
Wei Ma

Frontiers in Plant Science

doi 10.3389/fpls.2024.1458962

1,639 views
2 citations

783 articles

articles

Editorial: Precision exploration of plant germplasm resources: breakthroughs and applications in telomere-to-telomere (T2T) genomics

Variation analysis and comparison of leaf and fruit traits of triploid hybrid progeny in jujube

Comprehensive analysis of the mitochondrial genome of Iris domestica emphasizing multichromosomal organization and repeat-mediated homologous recombination

Rapid and accurate detection of peanut pod appearance quality based on lightweight and improved YOLOv5_SSE model

Editorial: Omics in seed development: challenges and opportunities for improving of seed quality and yield in model and crop plants

Dynamic changes in the transcriptome of tropical region-originated king grasses in response to cold stress

New insights into the transcription factor regulatory networks driving peel coloration under hormone induction analyzed by transcriptomics and metabolomics in tangor ‘Murcot’

Applications of synchrotron light in seed research: an array of x-ray and infrared imaging methodologies

Rapid and accurate classification of mung bean seeds based on HPMobileNet

Identification of maize kernel varieties based on interpretable ensemble algorithms

Pulse protein quality and derived bioactive peptides

Pan-genome analysis and expression verification of the maize ARF gene family

Comprehensive transcriptome and proteome analysis revealed the molecular mechanisms of melatonin priming and waterlogging response in peach

A gene expression atlas of Nicotiana tabacum across various tissues at transcript resolution

Integrative analysis of metabolite and transcriptome reveals the biosynthetic pathway and candidate genes for iridoid glycoside biosynthesis in Neopicrorhiza scrophulariiflora (Pennell) D.Y.Hong

Deep R-gene discovery in HLB resistant wild Australian limes uncovers evolutionary features and potentially important loci for hybrid breeding

In silico characterisation of the avocado WAK/WAKL gene family with a focus on genes involved in defence against Phytophthora cinnamomi

Transcriptomic and metabolomic analyses reveal the mechanism of color difference between two kinds of Cistanche deserticola before and after drying

Genome-wide identification and expression analysis of bHLH gene family revealed their potential roles in abiotic stress response, anthocyanin biosynthesis and trichome formation in Glycyrrhiza uralensis

Chrysanthemum classification method integrating deep visual features from both the front and back sides

Integrated metabolome and transcriptome analysis reveals potential mechanism during the bud dormancy transition of Astragalus membranaceus (Fisch.) Bge. var. mongholicus (Bge.) Hsiao

Features and evolutionary adaptations of the mitochondrial genome of Garuga forrestii W. W. Sm

Rapid and non-destructive classification of rice seeds with different flavors: an approach based on HPFasterNet

Research on the quantification and automatic classification method of Chinese cabbage plant type based on point cloud data and PointNet++