Frontiers in Plant Science | Plant Bioinformatics

Original Research

Published on 12 Feb 2025

Identification of maize kernel varieties based on interpretable ensemble algorithms

in Plant Bioinformatics

Chunguang Bi
Xinhua Bi
Jinjing Liu
Hao Xie
Shuo Zhang
He Chen
Mohan Wang
Lei Shi
Shaozhong Song

Frontiers in Plant Science

doi 10.3389/fpls.2025.1511097

2,597 views
5 citations

Mini Review

Published on 11 Feb 2025

Pulse protein quality and derived bioactive peptides

in Plant Bioinformatics

Matthew G. Nosworthy
Bianyun Yu
L. Irina Zaharia
Gerardo Medina
Nii Patterson

Frontiers in Plant Science

doi 10.3389/fpls.2025.1429225

4,086 views
3 citations

Original Research

Published on 11 Feb 2025

Pan-genome analysis and expression verification of the maize ARF gene family

in Plant Bioinformatics

Quan-cai Man
Yan-qun Wang
Shun-juan Gao
Zhi-chang Gao
Zheng-ping Peng
Jiang-hui Cui

Frontiers in Plant Science

doi 10.3389/fpls.2024.1506853

5,251 views
5 citations

Original Research

Published on 07 Feb 2025

Comprehensive transcriptome and proteome analysis revealed the molecular mechanisms of melatonin priming and waterlogging response in peach

in Plant Bioinformatics

Xianbin Gu
Linghong Lu
Jing Gao
Fei Fan
Genhua Song
Huiqin Zhang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1527382

2,549 views
3 citations

Original Research

Published on 07 Feb 2025

A gene expression atlas of Nicotiana tabacum across various tissues at transcript resolution

in Plant Bioinformatics

Shizhou Yu
Jufen Wan
Tenghang Xu
Jie Zhang
Linggai Cao
Jie Liu
Hongfeng Liu
Xueliang Ren
Zhixiao Yang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1500654

3,323 views
1 citation

Original Research

Published on 03 Feb 2025

Integrative analysis of metabolite and transcriptome reveals the biosynthetic pathway and candidate genes for iridoid glycoside biosynthesis in Neopicrorhiza scrophulariiflora (Pennell) D.Y.Hong

in Plant Bioinformatics

Ke Rao
Siyu Liu
Xiaohui Tang
Guofu Jia
Shaohua Yang
Chaoxiang Ren
Jin Pei

Frontiers in Plant Science

doi 10.3389/fpls.2025.1527477

2,702 views
2 citations

Original Research

Published on 29 Jan 2025

Deep R-gene discovery in HLB resistant wild Australian limes uncovers evolutionary features and potentially important loci for hybrid breeding

in Plant Bioinformatics

Jianyang Liu
Khushwant Singh
Matthew Huff
Christopher Gottschalk
Michael Do
Margaret Staton
Manjunath L. Keremane
Robert Krueger
Chandrika Ramadugu
Chris Dardick

Frontiers in Plant Science

doi 10.3389/fpls.2024.1503030

3,127 views
5 citations

Original Research

Published on 29 Jan 2025

In silico characterisation of the avocado WAK/WAKL gene family with a focus on genes involved in defence against Phytophthora cinnamomi

in Plant Bioinformatics

Aaron Harvey
Noëlani van den Berg
Velushka Swart

Frontiers in Plant Science

doi 10.3389/fpls.2024.1474781

2,312 views
1 citation

Original Research

Published on 23 Jan 2025

Transcriptomic and metabolomic analyses reveal the mechanism of color difference between two kinds of Cistanche deserticola before and after drying

in Plant Bioinformatics

Tiantian Zhu
Jing Zhang
Tianle Liu
Shuai Zhang
Baimei Yang
Li Xu
Lei Zhao
Mengfei Li
Ling Jin

Frontiers in Plant Science

doi 10.3389/fpls.2024.1506523

2,535 views
1 citation

Original Research

Published on 21 Jan 2025

Genome-wide identification and expression analysis of bHLH gene family revealed their potential roles in abiotic stress response, anthocyanin biosynthesis and trichome formation in Glycyrrhiza uralensis

in Plant Bioinformatics

Guohua Ding
Yanping Shi
Kerui Xie
Hongbin Li
Guanghui Xiao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1485757

3,625 views
2 citations

Original Research

Published on 21 Jan 2025

Chrysanthemum classification method integrating deep visual features from both the front and back sides

in Plant Bioinformatics

Yifan Chen
Xichen Yang
Hui Yan
Jia Liu
Jian Jiang
Zhongyuan Mao
Tianshu Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1463113

2,308 views
5 citations

Original Research

Published on 21 Jan 2025

Integrated metabolome and transcriptome analysis reveals potential mechanism during the bud dormancy transition of Astragalus membranaceus (Fisch.) Bge. var. mongholicus (Bge.) Hsiao

in Plant Bioinformatics

Huan Guan
Yuhuan Zhao
Qing Chen
Qianqian Zhang
Pengpeng Yang
Shuying Sun
Guilin Chen

Frontiers in Plant Science

doi 10.3389/fpls.2024.1483538

2,756 views
1 citation

Original Research

Published on 20 Jan 2025

Features and evolutionary adaptations of the mitochondrial genome of Garuga forrestii W. W. Sm

in Plant Bioinformatics

Rong Chen
Rui Rao
Chun Wang
Dongbo Zhu
Fen Yuan
Liangliang Yue

Frontiers in Plant Science

doi 10.3389/fpls.2024.1509669

2,484 views
1 citation

Original Research

Published on 20 Jan 2025

Rapid and non-destructive classification of rice seeds with different flavors: an approach based on HPFasterNet

in Plant Bioinformatics

Helong Yu
Zhenyang Chen
Shaozhong Song
Chunyan Qi
Junling Liu
Chenglin Yang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1502631

1,856 views
7 citations

Original Research

Published on 17 Jan 2025

Research on the quantification and automatic classification method of Chinese cabbage plant type based on point cloud data and PointNet++

in Plant Bioinformatics

Chongchong Yang
Lei Sun
Jun Zhang
Xiaofei Fan
Dongfang Zhang
Tianyi Ren
Minggeng Liu
Zhiming Zhang
Wei Ma

Frontiers in Plant Science

doi 10.3389/fpls.2024.1458962

1,858 views
3 citations

Original Research

Published on 16 Jan 2025

Genome-wide identification, characterization and expression pattern analysis of HAK/KUP/KT potassium transporter gene family in potato

in Plant Bioinformatics

Kun Liu
Yonglin Qin
Lan Wu
Rong Yi
Xiaohua Shi
Jing Yu
Xiaohong Shi
Wenzhuo Dong
Liguo Jia
Mingshou Fan

Frontiers in Plant Science

doi 10.3389/fpls.2024.1487794

3,536 views
2 citations

Original Research

Published on 15 Jan 2025

Identification of the AHP family reveals their critical response to cytokinin regulation during adventitious root formation in apple rootstock

in Plant Bioinformatics

Ke Li
Huan Li
Wei Ling Liang
Jing Ju Liu
Hui Yue Tian
Li Hu Wang
Yan Hong Wei

Frontiers in Plant Science

doi 10.3389/fpls.2024.1511713

2,021 views
5 citations

Original Research

Published on 13 Jan 2025

Deep learning-enabled exploration of global spectral features for photosynthetic capacity estimation

in Plant Bioinformatics

Xianzhi Deng
Xiaolong Hu
Liangsheng Shi
Chenye Su
Jinmin Li
Shuai Du
Shenji Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1499875

2,135 views
2 citations

Original Research

Published on 10 Jan 2025

Transcriptomic and metabolomic analysis reveals the molecular mechanism of exogenous melatonin improves salt tolerance in eggplants

in Plant Bioinformatics

Han Wang
Yu Zhang
Haikun Jiang
Qiangqiang Ding
Yan Wang
Mingxia Wang
Congsheng Yan
Li Jia

Frontiers in Plant Science

doi 10.3389/fpls.2024.1523582

2,793 views
8 citations

Original Research

Published on 10 Jan 2025

Mitochondrial genome of Lonicera macranthoides: features, RNA editing, and insights into male sterility

in Plant Bioinformatics

Zhong Chen
Wei Zhuo
Yuqi Wang
Junpeng Qi
Li Liu
Sheng’E. Lu
Han Wang
Tao Sun
Liqiang Wang
Fengming Ren

Frontiers in Plant Science

doi 10.3389/fpls.2024.1520251

2,561 views

Review

Published on 09 Jan 2025

Odyssey of environmental and microbial interventions in maize crop improvement

in Plant Bioinformatics

Alok Kumar Singh
Alok Kumar Srivastava
Parul Johri
Manish Dwivedi
Radhey Shyam Kaushal
Mala Trivedi
Tarun Kumar Upadhyay
Nadiyah M. Alabdallah
Irfan Ahmad
Mohd Saeed

Frontiers in Plant Science

doi 10.3389/fpls.2024.1428475

5,621 views
5 citations

Original Research

Published on 09 Jan 2025

Monitoring of agricultural progress in rice-wheat rotation area based on UAV RGB images

in Plant Bioinformatics

Jianliang Wang
Chen Chen
Senpeng Huang
Hui Wang
Yuanyuan Zhao
Jiacheng Wang
Zhaosheng Yao
Chengming Sun
Tao Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1502863

2,204 views
2 citations

Original Research

Published on 08 Jan 2025

A customized convolutional neural network-based approach for weeds identification in cotton crops

in Plant Bioinformatics

Hafiz Muhammad Faisal
Muhammad Aqib
Khalid Mahmood
Mejdl Safran
Sultan Alfarhood
Imran Ashraf

Frontiers in Plant Science

doi 10.3389/fpls.2024.1435301

4,234 views
8 citations

Original Research

Published on 07 Jan 2025

Comprehensive comparative metabolome study of a large collection of Corsican bryophytes

in Plant Bioinformatics

Anaïs Pannequin
Alain Muselli
Laurence Marcourt
Emerson Ferreira Queiroz
Luis-Manuel Quiros-Guerrero
Yoshinori Asakawa
Miwa Dounoue-Kubo
Jean-Luc Wolfender

Frontiers in Plant Science

doi 10.3389/fpls.2024.1470307

3,793 views
3 citations

798 articles

articles

Identification of maize kernel varieties based on interpretable ensemble algorithms

Pulse protein quality and derived bioactive peptides

Pan-genome analysis and expression verification of the maize ARF gene family

Comprehensive transcriptome and proteome analysis revealed the molecular mechanisms of melatonin priming and waterlogging response in peach

A gene expression atlas of Nicotiana tabacum across various tissues at transcript resolution

Integrative analysis of metabolite and transcriptome reveals the biosynthetic pathway and candidate genes for iridoid glycoside biosynthesis in Neopicrorhiza scrophulariiflora (Pennell) D.Y.Hong

Deep R-gene discovery in HLB resistant wild Australian limes uncovers evolutionary features and potentially important loci for hybrid breeding

In silico characterisation of the avocado WAK/WAKL gene family with a focus on genes involved in defence against Phytophthora cinnamomi

Transcriptomic and metabolomic analyses reveal the mechanism of color difference between two kinds of Cistanche deserticola before and after drying

Genome-wide identification and expression analysis of bHLH gene family revealed their potential roles in abiotic stress response, anthocyanin biosynthesis and trichome formation in Glycyrrhiza uralensis

Chrysanthemum classification method integrating deep visual features from both the front and back sides

Integrated metabolome and transcriptome analysis reveals potential mechanism during the bud dormancy transition of Astragalus membranaceus (Fisch.) Bge. var. mongholicus (Bge.) Hsiao

Features and evolutionary adaptations of the mitochondrial genome of Garuga forrestii W. W. Sm

Rapid and non-destructive classification of rice seeds with different flavors: an approach based on HPFasterNet

Research on the quantification and automatic classification method of Chinese cabbage plant type based on point cloud data and PointNet++

Genome-wide identification, characterization and expression pattern analysis of HAK/KUP/KT potassium transporter gene family in potato

Identification of the AHP family reveals their critical response to cytokinin regulation during adventitious root formation in apple rootstock

Deep learning-enabled exploration of global spectral features for photosynthetic capacity estimation

Transcriptomic and metabolomic analysis reveals the molecular mechanism of exogenous melatonin improves salt tolerance in eggplants

Mitochondrial genome of Lonicera macranthoides: features, RNA editing, and insights into male sterility

Odyssey of environmental and microbial interventions in maize crop improvement

Monitoring of agricultural progress in rice-wheat rotation area based on UAV RGB images

A customized convolutional neural network-based approach for weeds identification in cotton crops

Comprehensive comparative metabolome study of a large collection of Corsican bryophytes