Frontiers in Plant Science | Plant Bioinformatics

Original Research

Published on 26 Dec 2024

A multivariate soil temperature interval forecasting method for precision regulation of plant growth environment

in Plant Bioinformatics

Hang Yin
Zeyu Wu
Zurui Huang
Yiting Luo
Xiaohan Liu
Xiaojiang Peng
Qiang Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1460654

2,244 views

Original Research

Published on 24 Dec 2024

Comparative analysis of the JRL gene family in the whole-genome of five gramineous plants

in Plant Bioinformatics

Luping Gong
Yitong Lu
Yujie Wang
Furu He
Tao Zhu
Baoping Xue

Frontiers in Plant Science

doi 10.3389/fpls.2024.1501975

2,524 views
2 citations

Technology and Code

Published on 24 Dec 2024

ShinyGS—a graphical toolkit with a serial of genetic and machine learning models for genomic selection: application, benchmarking, and recommendations

in Plant Bioinformatics

Le Yu
Yifei Dai
Mingjia Zhu
Linjie Guo
Yan Ji
Huan Si
Lirui Cheng
Tao Zhao
Yanjun Zan

Frontiers in Plant Science

doi 10.3389/fpls.2024.1480902

2,901 views

Original Research

Published on 23 Dec 2024

Assembly and comparative analysis of the complete mitogenome of Rubus chingii var. suavissimus, an exceptional berry plant possessing sweet leaves

in Plant Bioinformatics

Yujie Shi
Zhen Chen
Jingyong Jiang
Wenwu Wu
Yue Xin
Wei Zeng

Frontiers in Plant Science

doi 10.3389/fpls.2024.1504687

2,579 views
9 citations

Original Research

Published on 20 Dec 2024

Integrated metabolomics and proteomics analysis reveals the accumulation mechanism of bioactive components in Polygonatum odoratum

in Plant Bioinformatics

Shuang Liang
Yang Zhao
Zhaohui Luo
Junchen Liu
Xicen Jiang
Bingxian Yang
Lin Zhang
Hongwei Fu
Zhuoheng Zhong

Frontiers in Plant Science

doi 10.3389/fpls.2024.1487613

3,020 views
6 citations

Original Research

Published on 19 Dec 2024

Genome-wide analysis of Nicotiana tabacum IDD genes identifies NtIDD9 as a regulator of leaf angle

in Plant Bioinformatics

Zefeng Li
Peijian Cao
Huabing Liu
Jianfeng Zhang
Zhaopeng Luo
Hui Zhang
Mingzhu Wu
Xiaodong Xie

Frontiers in Plant Science

doi 10.3389/fpls.2024.1496351

2,117 views
3 citations

Original Research

Published on 13 Dec 2024

Unveiling the molecular mechanism of sepal curvature in Dendrobium Section Spatulata through full-length transcriptome and RNA-seq analysis

in Plant Bioinformatics

Xuefeng Qu
Na Li
Cong Xu
Zifeng Huang
Chunyan Li
Yang Jiang
Guizhao Zheng
Haiping Fu
Guangyan Zhang
Chuan Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1497230

2,616 views
1 citation

Original Research

Published on 11 Dec 2024

Genome-wide identification and expression analysis of the cellulose synthase gene family in potato (Solanum tuberosum L.)

in Plant Bioinformatics

Huiling Gong
Junxian Ma
Leonce Dusengemungu
Zaiping Feng

Frontiers in Plant Science

doi 10.3389/fpls.2024.1457958

2,004 views
3 citations

Original Research

Published on 05 Dec 2024

Organelle genome assembly, annotation, and comparative analyses of Typha latifolia and T. domingensis: two keystone species for wetlands worldwide

in Plant Bioinformatics

Thida Soe
Jiali Kong
Liyun Nie
Jie Wang
Dan Peng
Luke R. Tembrock
Zhiqiang Wu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1484531

2,102 views

Original Research

Published on 02 Dec 2024

Genome-wide characterization of the sunflower kinome: classification, evolutionary analysis and expression patterns under different stresses

in Plant Bioinformatics

Ningning Yan
Shuqing Yang
Haoyu Chao
Wenbing Zhang
Jian Zhang
Ming Chen
Jun Zhao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1450936

2,885 views
2 citations

Methods

Published on 02 Dec 2024

Prediction of protein interactions between pine and pine wood nematode using deep learning and multi-dimensional feature fusion

in Plant Bioinformatics

Liuyan Wang
Rongguang Li
Xuemei Guan
Shanchun Yan

Frontiers in Plant Science

doi 10.3389/fpls.2024.1489116

2,223 views
1 citation

Original Research

Published on 27 Nov 2024

AppleLeafNet: a lightweight and efficient deep learning framework for diagnosing apple leaf diseases

in Plant Bioinformatics

Muhammad Umair Ali
Majdi Khalid
Majed Farrash
Hassan Fareed M. Lahza
Amad Zafar
Seong-Han Kim

Frontiers in Plant Science

doi 10.3389/fpls.2024.1502314

4,063 views
12 citations

Original Research

Published on 26 Nov 2024

Structural and evolutionary analyses of the mitochondrial genome of Spuriopimpinella brachycarpa

in Plant Bioinformatics

Jun Han
Wenbo Xu
Huanxi Yu
Yun Han
Ming Zhu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1492723

2,164 views

Original Research

Published on 19 Nov 2024

Comparative genomic profiling of CBFs pan-gene family in five yellowhorn cultivars and functional identification of Xg11_CBF11

in Plant Bioinformatics

Juan Wang
Xizhen Liang
Weiyang Zhang
Asma Khalil
Yingying Wu
Sisi Liu
Muhammad Tahir ul Qamar
Xingqiang Wang
Jinping Guo

Frontiers in Plant Science

doi 10.3389/fpls.2024.1481358

2,316 views
1 citation

Original Research

Published on 13 Nov 2024

Comparative transcriptomic and proteomic analyses of two salt-tolerant alfalfa (Medicago sativa L.) genotypes: investigation of the mechanisms underlying tolerance to salt

in Plant Bioinformatics

Jiahui Hang
Ting Song
Ling Zhang
Wenjun Hou
Xiaoxia Liu
Dongmei Ma

Frontiers in Plant Science

doi 10.3389/fpls.2024.1442963

2,514 views
7 citations

Review

Published on 12 Nov 2024

Describing and characterizing the WAK/WAKL gene family across plant species: a systematic review

in Plant Bioinformatics

Aaron Harvey
Noëlani van den Berg
Velushka Swart

Frontiers in Plant Science

doi 10.3389/fpls.2024.1467148

5,463 views
8 citations

Original Research

Published on 12 Nov 2024

Molecular mechanisms underlying floral fragrance in Camellia japonica ‘High Fragrance’: a time-course assessment

in Plant Bioinformatics

Xuemei Chen
Xueping Zhang
Yongquan Li
Xueqin Tian
Xueyi Tian
Hongjie Zhao
Zuying Xuan
Kena Xue
Yongjuan Li
Wei Lin

Frontiers in Plant Science

doi 10.3389/fpls.2024.1461442

2,852 views
5 citations

Original Research

Published on 08 Nov 2024

Refining dual RNA-seq mapping: sequential and combined approaches in host-parasitic plant dynamics

in Plant Bioinformatics

Carmine Fruggiero
Gaetano Aufiero
Davide D’Angelo
Edoardo Pasolli
Nunzio D’Agostino

Frontiers in Plant Science

doi 10.3389/fpls.2024.1483717

3,032 views
1 citation

Original Research

Published on 08 Nov 2024

Evolutionary dynamics and functional characterization of proximal duplicated sorbitol-6-phosphate dehydrogenase genes in Rosaceae

in Plant Bioinformatics

Fan Yang
Jiawei Luo
Songxue Han
Yirong Zhang
Zhiguang Liu
Jincheng Lan
Yaqiang Sun
Tao Zhao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1480519

2,246 views
1 citation

Original Research

Published on 08 Nov 2024

A newly identified photosystem II Subunit P gene TaPsbP4A-1 in Triticeae species negatively regulates wheat powdery mildew resistance

in Plant Bioinformatics

Jun Xu
Mengfei Wang
Yueming Ren
Wanglong Luo
Lu Zhang
Shuangwei Liu
Ping Hu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1452281

1,683 views
1 citation

Original Research

Published on 07 Nov 2024

Transcriptome and metabolome analyses provide crucial insights into the adaptation of chieh-qua to Fusarium oxysporum infection

in Plant Bioinformatics

Yanchun Qiao
Jiazhu Peng
Bei Wu
Min Wang
Guoping He
Qingwu Peng
Yin Gao
Yuping Liu
Songguang Yang
Xiuchun Dai

Frontiers in Plant Science

doi 10.3389/fpls.2024.1344155

2,234 views
2 citations

Original Research

Published on 05 Nov 2024

ANFIS Fuzzy convolutional neural network model for leaf disease detection

in Plant Bioinformatics

Tae-hoon Kim
Mobeen Shahroz
Bayan Alabdullah
Nisreen Innab
Jamel Baili
Muhammad Umer
Fiaz Majeed
Imran Ashraf

Frontiers in Plant Science

doi 10.3389/fpls.2024.1465960

7,061 views
7 citations

Original Research

Published on 31 Oct 2024

Revealing the dynamic changes of metabolites and molecular mechanisms of chlorogenic acid accumulation during the leaf development of Vaccinium dunalianum based on multi-omic analyses

in Plant Bioinformatics

Anmian Zhang
Jiaxin Liu
Weicheng Li
Lihong Yang
Wenjin Duan
Ping Zhao
Zhiyu Pu
Yong Ding

Frontiers in Plant Science

doi 10.3389/fpls.2024.1440589

2,569 views
3 citations

Original Research

Published on 31 Oct 2024

Genome-wide characterization and evolution analysis of miniature inverted-repeat transposable elements in Barley (Hordeum vulgare)

in Plant Bioinformatics

Ruiying Li
Ju Yao
Shaoshuai Cai
Yi Fu
Chongde Lai
Xiangdong Zhu
Licao Cui
Yihan Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1474846

2,979 views
7 citations

798 articles

articles

A multivariate soil temperature interval forecasting method for precision regulation of plant growth environment

Comparative analysis of the JRL gene family in the whole-genome of five gramineous plants

ShinyGS—a graphical toolkit with a serial of genetic and machine learning models for genomic selection: application, benchmarking, and recommendations

Assembly and comparative analysis of the complete mitogenome of Rubus chingii var. suavissimus, an exceptional berry plant possessing sweet leaves

Integrated metabolomics and proteomics analysis reveals the accumulation mechanism of bioactive components in Polygonatum odoratum

Genome-wide analysis of Nicotiana tabacum IDD genes identifies NtIDD9 as a regulator of leaf angle

Unveiling the molecular mechanism of sepal curvature in Dendrobium Section Spatulata through full-length transcriptome and RNA-seq analysis

Genome-wide identification and expression analysis of the cellulose synthase gene family in potato (Solanum tuberosum L.)

Organelle genome assembly, annotation, and comparative analyses of Typha latifolia and T. domingensis: two keystone species for wetlands worldwide

Genome-wide characterization of the sunflower kinome: classification, evolutionary analysis and expression patterns under different stresses

Prediction of protein interactions between pine and pine wood nematode using deep learning and multi-dimensional feature fusion

AppleLeafNet: a lightweight and efficient deep learning framework for diagnosing apple leaf diseases

Structural and evolutionary analyses of the mitochondrial genome of Spuriopimpinella brachycarpa

Comparative genomic profiling of CBFs pan-gene family in five yellowhorn cultivars and functional identification of Xg11_CBF11

Comparative transcriptomic and proteomic analyses of two salt-tolerant alfalfa (Medicago sativa L.) genotypes: investigation of the mechanisms underlying tolerance to salt

Describing and characterizing the WAK/WAKL gene family across plant species: a systematic review

Molecular mechanisms underlying floral fragrance in Camellia japonica ‘High Fragrance’: a time-course assessment

Refining dual RNA-seq mapping: sequential and combined approaches in host-parasitic plant dynamics

Evolutionary dynamics and functional characterization of proximal duplicated sorbitol-6-phosphate dehydrogenase genes in Rosaceae

A newly identified photosystem II Subunit P gene TaPsbP4A-1 in Triticeae species negatively regulates wheat powdery mildew resistance

Transcriptome and metabolome analyses provide crucial insights into the adaptation of chieh-qua to Fusarium oxysporum infection

ANFIS Fuzzy convolutional neural network model for leaf disease detection

Revealing the dynamic changes of metabolites and molecular mechanisms of chlorogenic acid accumulation during the leaf development of Vaccinium dunalianum based on multi-omic analyses

Genome-wide characterization and evolution analysis of miniature inverted-repeat transposable elements in Barley (Hordeum vulgare)