Frontiers in Plant Science | Plant Metabolism and Chemodiversity

Original Research

Published on 23 Jun 2025

Integrated transcriptomic and metabolomic analysis of flavonoid biosynthesis in cigar tobacco leaves under variable nitrogen regimes

in Plant Metabolism and Chemodiversity

Kai Jia
Juanjuan Shi
Lingli Bai
Xueren Wang
Yuemin Wang
Xiangzhen Li
Wenqing Li
Chaoyuan Zheng

Frontiers in Plant Science

doi 10.3389/fpls.2025.1589215

2,111 views
1 citation

Original Research

Published on 19 Jun 2025

Metabolomic adaptations and genetic polymorphism in ecopopulations of Rhodiola linearifolia Boriss

in Plant Metabolism and Chemodiversity

Malika Yerbay
Oxana N. Khapilina
Ainur S. Turzhanova
Irina G. Otradnykh
Irina A. Sedina
Aigerim Mamirova
Nazym K. Korbozova
Saule Magzumova
Kazhybek Ashimuly
Nataliya O. Kudrina

Frontiers in Plant Science

doi 10.3389/fpls.2025.1570411

1,411 views
3 citations

Review

Published on 19 Jun 2025

The biosynthetic pathway of coumarin and its genetic regulation in response to biotic and abiotic stresses

in Plant Metabolism and Chemodiversity

Yixue Wang
Tiqing Guan
Xianling Yue
Jiashuo Yang
Xiaomin Zhao
Aixia Chang
Changqing Yang
Zhenjun Fan
Keqiang Liu
Yiting Li

Frontiers in Plant Science

doi 10.3389/fpls.2025.1599591

6,848 views
5 citations

Original Research

Published on 19 Jun 2025

The Hedyotis diffusa chromosome-level genome and multi-omics analysis provide new insights into the iridoids biosynthetic pathway

in Plant Metabolism and Chemodiversity

Pengyu Chen
Zhuang Huang
Mingzhu Yin
Yu-xin Wen
Qi Jiang
Ping Huang
Rui Qian
Xing Hong
Kaojiang Zhu
Benjiang Xiao

Frontiers in Plant Science

doi 10.3389/fpls.2025.1607226

2,369 views

Original Research

Published on 19 Jun 2025

Impact of elicitors and light on biosynthesis of sesquiterpene lactones in tissue culture of Arnica montana and its variety Arbo

in Plant Metabolism and Chemodiversity

Agata Parafiniuk
Krystyna Kromer
Mariusz G. Fleszar
Katarzyna Wróblewska
Jerzy Ł. Wiśniewski
Andrzej Gamian

Frontiers in Plant Science

doi 10.3389/fpls.2025.1611849

2,303 views

Original Research

Published on 18 Jun 2025

Metabolomic and transcriptomic analyses provide insights into the red pigmentation in loquat (Eriobotrya japonica) peel

in Plant Metabolism and Chemodiversity

Yaling Zhang
Xiuping Chen
Wenbing Su
Chaojun Deng
Jimou Jiang
Shaoquan Zheng

Frontiers in Plant Science

doi 10.3389/fpls.2025.1615281

1,528 views

Original Research

Published on 18 Jun 2025

Escaping endogenous miRNA post-transcriptional silencing of JrGRF4b enhanced transformation efficiency in woody plants

in Plant Metabolism and Chemodiversity

Baoxin Li
Mengting Pan
Dezheng Wu
Zhimin Zheng
Dong Pei

Frontiers in Plant Science

doi 10.3389/fpls.2025.1629166

1,234 views
1 citation

Original Research

Accepted on 17 Jun 2025

Genome-Wide Identification and Analysis of OSC Gene Family in Panax japonicus

in Plant Metabolism and Chemodiversity

Yang Yang
Meijuan Wang
Xuebo Hu

Frontiers in Plant Science

398 views

Editorial

Published on 17 Jun 2025

Editorial: Plant specialized metabolisms: physiological responses and molecular mechanisms

in Plant Metabolism and Chemodiversity

Xinru Cui
Weiwei Zhang
Xiaomeng Liu
Feng Xu
Moonhyuk Kwon

Frontiers in Plant Science

doi 10.3389/fpls.2025.1629842

973 views

Original Research

Published on 17 Jun 2025

Integration of metabolic and transcriptomic analyses for revealing the galactose metabolism of tobacco (Nicotiana tabacum) under salt stress

in Plant Metabolism and Chemodiversity

Ge Bai
Hui Zhang
Yong Li
Da-Hai Yang
Mingliang Fei
Tao Pang
Yaning Fu
Ai-Guo Yang
Zhen-Yu Wang
Jinbao Gu

Frontiers in Plant Science

doi 10.3389/fpls.2025.1614515

1,789 views

Original Research

Published on 16 Jun 2025

Depletion reveals role of bicarbonate in the photosynthetic electron transport chain of Limnospira maxima

in Plant Metabolism and Chemodiversity

Leslie Castillo
Stavroula Nicolaou
Colin Gates

Frontiers in Plant Science

doi 10.3389/fpls.2025.1584909

2,122 views
2 citations

Original Research

Published on 10 Jun 2025

Insights into the molecular mechanisms of browning tolerance in luffa: a transcriptome and metabolome analysis

in Plant Metabolism and Chemodiversity

Shan Wu
Miao Sun
Huashan Lian

Frontiers in Plant Science

doi 10.3389/fpls.2025.1530531

1,809 views

Original Research

Published on 06 Jun 2025

Exogenous strigolactones modulate antioxidant metabolism via CsD27 to enhance drought tolerance in tea plants

in Plant Metabolism and Chemodiversity

Jingyue Shen
Manni Tong
Qingyun Yuan
Lizhi Long
Yuanzhi Shi

Frontiers in Plant Science

doi 10.3389/fpls.2025.1601094

1,835 views

Original Research

Published on 03 Jun 2025

Integrated metabolomics and metagenomics reveal plant-microbe interactions driving aroma differentiation in flue-cured tobacco leaves

in Plant Metabolism and Chemodiversity

Yifan Jia
Jianwei Wang
Xiaojie Lin
Taibo Liang
Huaxin Dai
Baojian Wu
Mengmeng Yang
Yanling Zhang
Ruifang Li

Frontiers in Plant Science

doi 10.3389/fpls.2025.1588888

2,783 views
1 citation

Original Research

Published on 03 Jun 2025

Exploring the chemotypic variability of Silybum marianum and Silybum eburneum by biochemical and genetic characterization

in Plant Metabolism and Chemodiversity

Marianna Pasquariello
Tommaso Martinelli
Roberta Paris
Anna Moschella
Roberto Colombo
Alice Di Bello
Jessica Frigerio
Abdenour Kheloufi
Mohammad Amin Mirzaabolghasemi
Damiano Puglisi

Frontiers in Plant Science

doi 10.3389/fpls.2025.1584104

2,578 views

Editorial

Published on 02 Jun 2025

Editorial: Metabolomics in crop research – current and emerging methodologies, volume III

in Plant Metabolism and Chemodiversity

Marta Sousa Silva
Carlos Cordeiro

Frontiers in Plant Science

doi 10.3389/fpls.2025.1627911

1,073 views

Original Research

Published on 30 May 2025

Thiol-based redox sensing regulates the yellow pigment and antioxidant accumulation and improves the nutritional quality of wheat grains (Triticum aestivum L.)

in Plant Metabolism and Chemodiversity

Ranjeet R. Kumar
Prashant Babu H
Sumedha Hasija
Mallesh Gampa
Suneha Goswami
Vinutha T.
Sudhir Kumar
Gyan P. Mishra
Dwijesh Mishra
Gyanendra K. Rai

Frontiers in Plant Science

doi 10.3389/fpls.2025.1488697

2,106 views

Review

Published on 29 May 2025

Unlocking the potential of flavonoid biosynthesis through integrated metabolic engineering

in Plant Metabolism and Chemodiversity

Yuan Wang
Jiahong Chen
Genhe He
Li Yin
Yonghui Liao

Frontiers in Plant Science

doi 10.3389/fpls.2025.1597007

5,396 views
2 citations

Original Research

Published on 26 May 2025

Effects and formula optimization of Rosa roxbunghii pomace substrate on the yield and volatile flavor compounds of Lentinulaedodes

in Plant Metabolism and Chemodiversity

Tingfei Deng
Liangqun Li
Chunyan Li
Yanfang Yan
Anqin Gao
Xiaolan Liu
Xiong Pan
Ming Gao
Lijuan Ge
Mei Peng

Frontiers in Plant Science

doi 10.3389/fpls.2025.1456290

1,209 views
1 citation

Original Research

Published on 26 May 2025

Transcriptome analysis of Thevetia peruviana cell suspensions treated with methyl jasmonate reveals genes involved in phenolics, flavonoids and cardiac glycosides biosynthesis

in Plant Metabolism and Chemodiversity

Olmedo Cuaspud
Dary Mendoza
Gigliola Navarro
Juan Arias
Isabel Calle
Juliana Arcila-Galvis
Rafael Eduardo Arango Isaza

Frontiers in Plant Science

doi 10.3389/fpls.2025.1593315

2,260 views
2 citations

Original Research

Published on 23 May 2025

Integrated physiological, microbial, and metabolomics analyses revealed the differences in different varieties of Paeonia lactiflora Pall

in Plant Metabolism and Chemodiversity

Shuang Wu
Beijing Tian
Chenggang Shan
Xin Wang
Xinjing Xie
Hongqing Xie
Xiuwen Jia
Feng Zhang
Jinlong Han

Frontiers in Plant Science

doi 10.3389/fpls.2025.1577695

2,924 views

Original Research

Published on 23 May 2025

Metabolomics and transcriptomics indicate the changes in medicinal components of Amygdalus mongolica kernels during different developmental stages

in Plant Metabolism and Chemodiversity

Zhenyu Lei
Hong Chang
Li Song
Hongbing Zhou
Wanfu Bai
Yingchun Bai
Shuyuan Jiang
Songli Shi
Jia Wang

Frontiers in Plant Science

doi 10.3389/fpls.2025.1597638

1,541 views

Original Research

Published on 19 May 2025

Fruit-specific overexpression of lipoyl synthase increases both bound and unbound lipoic acid and alters the metabolome of tomato fruits

in Plant Metabolism and Chemodiversity

María Paz Covarrubias
Felipe Uribe
Daniela Arias-G
Pamela Cabedo
Michael Handford

Frontiers in Plant Science

doi 10.3389/fpls.2025.1545011

2,109 views
1 citation

Original Research

Published on 16 May 2025

Genome-wide analysis of MYB transcription factors in four Rheum L. plants provides new insights into the synthesis of Anthraquinones

in Plant Metabolism and Chemodiversity

Tao Wang
Shuo Zhao
Bo Wang
Jianan Li
Zengrong Ye
Famei Zhang
Huiyuan Ma
Guoying Zhou

Frontiers in Plant Science

doi 10.3389/fpls.2025.1558321

2,688 views
2 citations

1,826 articles

articles

Integrated transcriptomic and metabolomic analysis of flavonoid biosynthesis in cigar tobacco leaves under variable nitrogen regimes

Metabolomic adaptations and genetic polymorphism in ecopopulations of Rhodiola linearifolia Boriss

The biosynthetic pathway of coumarin and its genetic regulation in response to biotic and abiotic stresses

The Hedyotis diffusa chromosome-level genome and multi-omics analysis provide new insights into the iridoids biosynthetic pathway

Impact of elicitors and light on biosynthesis of sesquiterpene lactones in tissue culture of Arnica montana and its variety Arbo

Metabolomic and transcriptomic analyses provide insights into the red pigmentation in loquat (Eriobotrya japonica) peel

Escaping endogenous miRNA post-transcriptional silencing of JrGRF4b enhanced transformation efficiency in woody plants

Genome-Wide Identification and Analysis of OSC Gene Family in Panax japonicus

Editorial: Plant specialized metabolisms: physiological responses and molecular mechanisms

Integration of metabolic and transcriptomic analyses for revealing the galactose metabolism of tobacco (Nicotiana tabacum) under salt stress

Depletion reveals role of bicarbonate in the photosynthetic electron transport chain of Limnospira maxima

Insights into the molecular mechanisms of browning tolerance in luffa: a transcriptome and metabolome analysis

Exogenous strigolactones modulate antioxidant metabolism via CsD27 to enhance drought tolerance in tea plants

Integrated metabolomics and metagenomics reveal plant-microbe interactions driving aroma differentiation in flue-cured tobacco leaves

Exploring the chemotypic variability of Silybum marianum and Silybum eburneum by biochemical and genetic characterization

Editorial: Metabolomics in crop research – current and emerging methodologies, volume III

Thiol-based redox sensing regulates the yellow pigment and antioxidant accumulation and improves the nutritional quality of wheat grains (Triticum aestivum L.)

Unlocking the potential of flavonoid biosynthesis through integrated metabolic engineering

Effects and formula optimization of Rosa roxbunghii pomace substrate on the yield and volatile flavor compounds of Lentinulaedodes

Transcriptome analysis of Thevetia peruviana cell suspensions treated with methyl jasmonate reveals genes involved in phenolics, flavonoids and cardiac glycosides biosynthesis

Integrated physiological, microbial, and metabolomics analyses revealed the differences in different varieties of Paeonia lactiflora Pall

Metabolomics and transcriptomics indicate the changes in medicinal components of Amygdalus mongolica kernels during different developmental stages

Fruit-specific overexpression of lipoyl synthase increases both bound and unbound lipoic acid and alters the metabolome of tomato fruits

Genome-wide analysis of MYB transcription factors in four Rheum L. plants provides new insights into the synthesis of Anthraquinones